Array 1 219010-217269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUF01000001.1 Salmonella enterica strain CFSAN071952 CFSAN071952_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219009 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 218948 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 218887 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 218826 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 218765 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 218704 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 218643 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 218582 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 218521 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 218460 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 218399 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 218337 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 218276 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 218215 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 218153 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 218092 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 218031 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 217970 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 217909 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 217848 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 217787 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 217726 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 217665 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 217604 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 217543 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 217482 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 217421 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 217359 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 217298 29 96.6 0 A............................ | A [217271] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228751-227744 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUF01000001.1 Salmonella enterica strain CFSAN071952 CFSAN071952_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228750 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 228689 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 228628 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 228567 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 228505 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 228443 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 228382 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 228321 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 228260 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 228199 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 228138 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 228077 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 228015 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 227954 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 227893 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 227832 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 227771 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //