Array 1 83575-81529 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKYE01000014.1 Amycolatopsis antarctica strain AU-G6 NODE_14_length_195642_cov_217.817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 83574 29 100.0 32 ............................. CGGGGTCCATTCCCCCCGCGATTTCCAGCGCC 83513 29 100.0 32 ............................. AACCACCTGCCCCGTTGGAGTGGCACCCCTGG 83452 29 100.0 32 ............................. AGGGTGAGGCAGCCGGGAAGGTGCATGTGGTG 83391 29 96.6 32 ............................T GGGTTGTCCGGAACCGTCCGAGGGCTGCCACG 83330 29 100.0 32 ............................. GGGCAGACATCCGCCTATGAGGGGGTGGTGTG 83269 29 100.0 32 ............................. ATCGGGGTCGTCGCACACGACCGCCCCAACTC 83208 29 100.0 32 ............................. TCGTCAGGTCGTTTGTTGCCTTGGCATCGGGT 83147 29 100.0 32 ............................. CTCAAAAATCCGGCGCACACTGTCCTTCGCTA 83086 29 100.0 32 ............................. TCCCCCGACTGCGCGCCCCCGCCACCACGGTC 83025 29 96.6 33 ............................A CGCTGCTGACCATGTTGAGCAAGTCGGCCTGCT 82963 29 96.6 32 ............................A GTCTCGCGGTCAGTGAAATTTCGTGGCGGGGT 82902 29 100.0 32 ............................. AGGTGATCGTTTTCCCTGCGCCAGGTGATCTG 82841 29 100.0 32 ............................. TGGAAGCGGCGACCCGATCGATCAACGGCGGG 82780 29 100.0 32 ............................. AGGTGATCGTTTTCCCTGCGCCAGGTGATCTG 82719 29 100.0 32 ............................. TGGAAGCGGCGACCCGATCGATCAACGGCGGG 82658 29 100.0 32 ............................. AGGTGATCGTTTTCCCTGCGCCAGGTGATCTG 82597 29 100.0 32 ............................. TGGAAGCGGCGACCCGATCGATCAACGGCGGG 82536 29 100.0 32 ............................. CACAGGGCTGCGGCGTACGCGGCAAATCCGGT 82475 29 100.0 32 ............................. GCCGAGGTGCAGGCCCGACCGGTCACGGTGCT 82414 29 100.0 32 ............................. CGGGCCAGCACAGGGTGCTGGTGACGCAGCTC 82353 29 100.0 32 ............................. GCGGCGACGGGACCGGGTCGACAGGGCAGGGC 82292 29 100.0 32 ............................. GTGTGGTGTTCTTCCGAGGCAAAAGCGGCATC 82231 29 100.0 32 ............................. TTCTCCGTGATCTCCCCCGCCGGCGTGCCCGC 82170 29 96.6 37 ............................T AGGCGGACGTCGGCGTACGCCTCGGAACCGGTGACGA 82104 29 96.6 32 .................A........... GCACCCGGTGGCTCTCTGAGATGGGCGAGTTC 82043 29 96.6 32 .......T..................... AGGTCCGGCATCCGCCAGCGATCCTGGCCGTG 81982 29 96.6 32 .................A........... GCACCCGGTGGCTCTCTGAGATGGGCGAGTTC 81921 29 96.6 32 .......T..................... AGGTCCGGCATCCGCCAGCGATCCTGGCCGTG 81860 29 96.6 32 .................A........... GCACCCGGTGGCTCTCTGAGATGGGCGAGTTC 81799 29 96.6 32 .......T..................... AGGTCCGGCATCCGCCAGCGATCCTGGCCGTG 81738 29 100.0 32 ............................. ACCTGGCGCTCGATCGCCGAACTCGCCCTGTG 81677 29 96.6 31 ...T......................... GCGTCCTGGATCCACCGTTGACAGCGGACCA 81617 28 72.4 33 .G.-.....TT..A.......G..CC... CCCCCGACTGGTTGCGGACTTGTCGCGGGCAGC 81556 28 79.3 0 ..G.....T....A....T..G..-.... | ========== ====== ====== ====== ============================= ===================================== ================== 34 29 97.5 32 GTTCTCCCCGCGCCAGCGGGGATGGTCCC # Left flank : GCTCGGAACCCACCGTTCTCCCCACCTTTCGGACCTTGCTGCGCCGGAGCATGTCGCACTCCGGCGCAGCAACCACCGTCCCCGCTTGCGCGGGGATCACCTGGACGTGCCCCCGAAAGGAAACGTTCAACTTGGACCAACCCGGCCTGCAATGCCGGGAGGAGCTTGCGGTCCTCGACTCTCACCTTCACGGAAGCACCTTAAGCACAGTGGTGTATTTTCCAATAGGGAACGTACAACTGTTCACTAGTGTGGGTGCTCGTGACGAGCAGCGGAGCCCTAACGGACGCGGCGTCCCGCCACCCCGTGATCGGCAGGTGATGACCTGCACTTCAGCGGTAGCGTCGCGCATCGAGACGACCGCCATACTGAGGCAACGCCAACGGTTCACGCTGACGACGTCGACACAATCGCACCGATCGGAAGTCTCTGCGGAGAGCTTCCCGGTACTCGCCAAACATTAACGATTCAGCCCTGATATCGTCGCAGGTCAGCAAGGG # Right flank : GACCGCGGTTCCCGTGGCGGCATCGCTCTACCGCGATCGCCAGATGCCACGTCTTCCCAGATGTGCCGGACTTTCCACCATGCGCCAACAAATCGTTCCCGTGCCACGTCGCCGACGTTCTGCCGTAGACTGACAACATGACCGCGTCGGAACCGCACACGACACAAGTCCGCCTGACCGCCGGACCGGGCGGCCGGGTCACCATTCCTGCACCGCTGCGCCGGGCCGCCGGCATCGAGCCGGGCGAGCAGCTCGTCGCCTCGGTGGAGGACGGCCGGGTCGTCCTCGAACCGTGGGAGCACTTGCTTGCCCGCGTCCAGGCCCGGGTGGCCGCCGCTACCGGCCACCACACCGGCCTCGCCTCCGCCGAACTCATCGCCGACCGCCGTGCCGAAGCCGCCCGCGAGGACGCCGGCGCCAACGCCACGATCGACGGTGAGGCGTGACCGTCGTCCTCGATGCCAGCGCCGTTCTTGCCCTACTGCGCGGCGAACCCGGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCCAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93491-96510 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKYE01000014.1 Amycolatopsis antarctica strain AU-G6 NODE_14_length_195642_cov_217.817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 93491 28 100.0 33 ............................ CATCCCCGGCCCGGCAGCAGATGCGGCGGGAAT 93552 28 100.0 33 ............................ CAGTTGGCGTGCGACGGGAAGGGTGGGGCGCTC 93613 28 100.0 33 ............................ CGGGTCGACCAGGCGATCGCCGAGATCGCCGAG 93674 28 100.0 33 ............................ CGGTTTCGCTGGGAAGATTGCGCTCCGGGCTCG 93735 28 100.0 33 ............................ CAGCATCCTGAACCGCACGCTGACCATCCGCCA 93796 28 100.0 33 ............................ CAGCCCTCACCTGAGCCCGCAAGACCTGCGCGC 93857 28 100.0 33 ............................ GGCGCACGACACCGCTGCCCGCCACGAGCTGGC 93918 28 100.0 33 ............................ CGGGACGGTCGCACTGCGGGTGACCAGCTCCAC 93979 28 100.0 33 ............................ GCTCGCAGTGAGCGCCCGGGGTCCGCGCCGCCG 94040 28 100.0 33 ............................ CGCGGCGCATGGCGCAGCTCGCTGGCGACTGCC 94101 28 100.0 33 ............................ CAAATGCGACCTCGACGCCGTGCCGCCAAGAAG 94162 28 100.0 33 ............................ TGATCGCGATCTCGCCAATCAGCGGCGCCAGCG 94223 28 100.0 33 ............................ CGCGAGCAGGGCCCGCACCGTGCTGGTGCGGGC 94284 28 100.0 33 ............................ CTACTCCATGCGCGAAGCCGCACTCGCCGCCGA 94345 28 100.0 34 ............................ CCCCCCAACCTGTGCGTTCTGTCTAACCCTAATC 94407 28 100.0 33 ............................ CAGCAGAAAGTCTGCGAGCGGACCACCAGGCGG 94468 28 100.0 33 ............................ CGGGACATGCTCGACATGCTGCGCGCGCGGTAC 94529 28 100.0 33 ............................ CTGCGCCGCATCGACGTCGCCGCCGAGTTCGAC 94590 28 100.0 33 ............................ CCCGGTGCGGACGGGAGCTGTCGCGTGATCCAC 94651 28 100.0 33 ............................ CGGGTGGCCCCGGTACGACACGATCCACGAGTA 94712 28 100.0 33 ............................ CGGGAAGACCGTGCAAGAGACCGTCGTCTGCAC 94773 28 100.0 33 ............................ CTCCTCTCAGGGGAAGACGGATGACGGCGTTCG 94834 28 100.0 34 ............................ CACGACGCCGATGAAGACCGTCCGGGATCCACGG 94896 28 100.0 33 ............................ CCCCGTACCCGCTACCGGCGTTGCCATGTGGAT 94957 28 100.0 34 ............................ CCCCGCGTGGGGGTTGCCTGTCGAGATGCTGCCC 95019 28 100.0 33 ............................ CGGGCAGTTGCGTGCGGGCATGTTGGATGCAAT 95080 28 100.0 32 ............................ CGCGTCGGCCAGCCAGGCGTGCACCGCCGTGC 95140 28 100.0 33 ............................ CGGCCGCGAGCGGGAACCAACCCTGAGCGATGT 95201 28 100.0 33 ............................ CTGGTACGGCGTGTCATCCGGGCGCCCGAACAC 95262 27 96.4 31 .......................-.... CGCCCGGCCGGAAAGGCTCGGCCCCCAGCGC GCAC [95284] 95324 28 100.0 33 ............................ CACCCCGGACCTGAACAAGGACGGCAAGCAGGG 95385 28 100.0 33 ............................ TCGCACTACCCGTGTGCCGGGCGGGCAGCGGAC 95446 28 100.0 33 ............................ CCGACAGTGTCGCAATCCCCCAAGAACATGCGC 95507 28 100.0 33 ............................ CGCGCCAACCAGTCCGAAGGCGTGTATGCGGCA 95568 28 100.0 33 ............................ TGATTCTGCGGCGACGGTGAAGGTCGAGTTGGA 95629 28 100.0 33 ............................ CCGCCTGGTCGCGCGAGCGCTCCGCATCCTCGA 95690 28 100.0 33 ............................ CTCACCGACGAGGTGGAACGATGGCTGCTGGCC 95751 28 100.0 34 ............................ CTCTGCGATCAGCGGTTGCCAGGCTGGTGGGGGC 95813 28 100.0 33 ............................ TCACGGCGATGGCCTCAGCGGCGCGGACAGCCA 95874 28 96.4 33 ..A......................... CGACACCCTGAGTGGTATCCGCTGGGCCGGGAG 95935 28 100.0 33 ............................ CATGACAGCCCACTCGCCCGGGGCCAGCCGGAC 95996 28 100.0 33 ............................ CTGGGCCTGGACCAGTGGGTTCCCGGCCGCGGC 96057 28 100.0 33 ............................ CAGCAGCGAGGAACCACCGTTCCCGCCGATGCG 96118 28 100.0 33 ............................ CTGGGCGGGGAACGCCACCGCCGACTACGCCAT 96179 28 100.0 35 ............................ CAGCCTGGACCCGGCCGCCGCCTGCGGCGAGCACG 96242 28 96.4 33 .............A.............. CGTCGTCAGGCTGTCGGCCCAGCCGCCGGAGTC 96303 28 100.0 33 ............................ CAGGGCGAGCGCGGACGCAAGCGTGGTTTCGGC 96364 28 100.0 91 ............................ CCGGGTCTCGACGTCACCGCCGCCCATTCCGTTGGTGCTCCCTGCGCGGGGATGGTCCCCGGGCCAACTCTTCGCACAGATCCGACACTGA 96483 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ =========================================================================================== ================== 49 28 99.7 34 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGACGATCCCGACGTGGTGATGCTCTGGGACTACGACGGCAACGACGTCAGCAGCGGTGTGTCCTATCAGGAGGAACACGAACTGTGACCGTCATCGTCGTAGCGGCCTGTCCGGTCGGTCTGCGCGGGCATCTCACCCGCTGGCTGCTGGAGATATCGCCCGGCGTCTTCGTGGGCACGATCAGTGCGCGCGTGCGGGAACTGGTCTGGATCCGCGTCGTCGACATGGTGAAGACCGGACGGGCGATCATGGTCTGCAAGGCGGACAACGAACAGGGGCTCACCTTCACCGTCCACCAGCACAACTGGGAGCCCGTCGACATCGAGGGCGTACAGCTCATGCTCCGGCCCCACAGCCGCGCGGACACCGGCGACCACCCGGCGCAGCGCACCGCCGGTTGGAGCACCGCGGCAAGGCGCCGCAAGTTCGGCAAGCGACAGCCCTGACCGGTTGCCACAGTTTATCGATCCAGGCCCGGTAAAGTGCCAGGTCAACAAGA # Right flank : CCCTTCGGCAGGGCCGCGCGAGACGGATGGTCCCGCGATATCTGGCTGTCGCCTCTCACCGTCGCCGGCCTCGTCACCTACATGCGCCGGAGACAGTGCCCCCGGGCAACTTCTCCGCTGGGCCAGTGCTCACGCTGGCCGCGTAGCGCCACCGATTCTGTTCGTTACCTACCTCGCCGTAACGAGCACTGGCTTGCCGCGATTACACCACCACCGCAACCTCACGGAGCCGCCACCATGAACGCACCACACCCCGGGTGGCAACACCCGCACCGGAACCCGTACCCGGTGCAGCCCGTGTACTGGCGGCCCCCTGTTCCCCGCCCCGCACCGATCCACCACTACGTGCTGTGGCCCACGGTCGCGCTCGTTGTCGTGGCCACCATCGTCGCGCTGACGGCCCGCGTGCTGGACTACCAGGCGGTGATCGTGGTCGGAGTGCTTGCCGCCGGGGCGTCTGTTGCCGCCATCGCGGTTGGTGTCCGCCGATCAGTGCCGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //