Array 1 451342-453444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZAU010000003.1 Salmonella enterica strain TKBSJL3 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 451342 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 451403 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 451464 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 451525 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 451587 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451648 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 451709 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 451770 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 451831 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 451892 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 451953 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 452014 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 452075 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 452136 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 452197 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 452258 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 452319 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 452380 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 452441 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 452502 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 452563 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 452624 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 452685 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 452746 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 452807 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 452868 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 452929 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 452990 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 453051 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 453112 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 453173 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 453234 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 453295 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 453356 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 453417 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471077-473058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZAU010000003.1 Salmonella enterica strain TKBSJL3 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 471077 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 471138 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 471199 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 471260 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 471321 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 471382 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 471443 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 471504 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 471565 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 471626 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 471687 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 471748 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 471809 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 471870 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 471931 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 471992 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 472053 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 472114 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 472175 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 472236 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 472297 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 472358 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 472419 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 472480 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 472541 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 472602 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 472663 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 472724 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 472785 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 472846 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 472907 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 472968 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 473029 29 100.0 0 ............................. | A [473056] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //