Array 1 801329-799405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049600.1 Klebsiella aerogenes strain 18-2341 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 801328 29 100.0 32 ............................. GCAACTTCTCTTTATCGACTCCGTCAGCTTAC 801267 29 100.0 32 ............................. CCGCGTGGCCGCGATGGGGTGAATAACCAGAA 801206 29 100.0 32 ............................. TAATGACCTGCTGACTGCAATTGCGCTGGGCA 801145 29 100.0 32 ............................. TTGAGGCCTCACCGGGTGAAATTCAGGTATTG 801084 29 100.0 32 ............................. TGAATACTGGCGAACTGGTGCTGGTCGATACG 801023 29 100.0 32 ............................. CGCCGGGCTGATTTGCCCGGAAAGAACGGCGG 800962 29 100.0 32 ............................. TAACGGTAAATACGGCCCTGAATCCAGTGTGG 800901 29 100.0 32 ............................. TTCATTAAGCGTGTCAGCAATGACTATCTAAT 800840 29 100.0 32 ............................. GCTGTGCTGCAGGTTATTTTGTATATGTTACA 800779 29 100.0 32 ............................. TGTCGATAGCCATCAAAAGTGGTATAACCTTG 800718 29 100.0 32 ............................. GGGTATGCCCGCGCCACGGTGAGATTGTTATG 800657 29 100.0 32 ............................. CAGGTCCGTTTAAAAATCTCGACACGCGGCGC 800596 29 100.0 32 ............................. GCAACGTTAATTACGCAAAACCAGGTGTCACT 800535 29 100.0 33 ............................. CCAATAGCGCATTATTACCAGAATATCGCAAAC 800473 29 100.0 32 ............................. GCGGAGTGGCTGGAAACGGTTGTCCGGCCTGA 800412 29 100.0 32 ............................. GCCTATATGAGTGACCGCGACGGGTCTGTTCG 800351 29 100.0 32 ............................. GTTACGTAGGCGCGCTGCTCAATCAGCCTGAT 800290 29 100.0 32 ............................. GGCTTAAGAGGAAAGAGATAACGTCATATACT 800229 29 96.6 32 ............................A TACAGACGCGGCAACCAATGCGCTGACCTGGC 800168 29 100.0 32 ............................. GTGTGGTAATTATTGAGACGTGCTACGCCAAA 800107 29 100.0 32 ............................. AGTGATTCTCGTGCACTATCAAAGCGTCTGGA 800046 29 100.0 33 ............................. TTATTCAGGAATTCTATTGTGTCTTTTGCTTGC 799984 29 100.0 32 ............................. AGACAGCCAATAAATGGCTGCCGCAGCTGATG 799923 29 100.0 33 ............................. TTCGGCAACGAGCGCAACGACTATCTGATCAGC 799861 29 100.0 32 ............................. ATATGCAGGATATTAAAAATTTCAAACCGGCA 799800 29 96.6 33 ............................T GCGGTGGATAAAGCGCAGGTCGTCATGGGGGTC 799738 29 100.0 32 ............................. GCAGGAAAATCTACAGCCTTCCTACATAGGAC 799677 29 100.0 32 ............................. ACGCGCTACAACGTCCAGCACATCGCGATTGA 799616 29 100.0 32 ............................. CTCATTCAGTATCTCGGTCATTTTGTCGGCGG 799555 29 100.0 32 ............................. GGTAGGTAAAAACATGCCTCATAAATTATCGA 799494 29 100.0 32 ............................. TATTTCCCCTCGGTTGAGAAAGAAGTTAAGGA 799433 29 93.1 0 ............T.........C...... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCAGCGATACCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTTGCCATCTGGCTGCTGGAGGTTCGGGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATTTGGCAGCAGGTGATACAGCTTAGCGATTGCGGAAATGTGGTGATGGCCTGGGCAACGAACAGCGAATCTGGTTTTGAGTTTCAAACCTGGGGAGAGAACCGCCGCATGCCGGTAGATTTGGATGGCTTACGACTGGTGTCATTTCTTCCCATTGAAAATCAATGAGTTGAATGTTCTTTAATAATATGAAATTGTTGGAATAAAGTTGGTAGATTGTTGGTGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGA # Right flank : TAGATTTGTTTTAGGTGACGATTGCCACTTCTCATTCCCATTTCATTCTCGACTCTTTAGCTTTCCCCACTAACCTTTCGCTCAGAAAAATCCGGAGATGGGCACTGTCGGCCAAATTTCTCAGCCCAGGGGAATGGCGCCCCGTTTTTCACGTAAAGCTGGTACAGCCGCTTAACCGATTGTTGGTCGCTCGAGACCCAATTGCTGGCATTGCAAAGTATAGCGGCATAAGCCTGAGATTTTCGCGGTAGCAAACTGGCTGCTTTTTCAGCAAGTTTTGCCGCCCTCCAGCGATAATGCTCAACATTGTTGAATGGTTTGGGTCGTGAATGCTGTATGCGATATTGCTCCTCGCTACCAACCCAGGAGTGTACTCCAGAGATATTGTTTGTGGCGTCTGCGCAGGACAGGTACGTATTTGCGTCACTTAAATACTTTTGGTCAGGCTCCAAAAAATAGCTCATCAGGTTGTTGCCATGCTCGCGTAGAATGACCGCAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4190236-4191849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049600.1 Klebsiella aerogenes strain 18-2341 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4190236 28 100.0 33 ............................ TTGAGGTAATGGCGCAGTCTTCACAGCAAACAC 4190297 28 92.9 33 ......................G.G... TTATCCTGCTGCCAGCCTAAGCGCCCGTAGTTT 4190358 28 100.0 33 ............................ TAGTTTGCTCTGGCAGCATCGATTAAAAATTTT 4190419 28 100.0 33 ............................ CTTATCAACCTCTATCGCTGAGGGGTCAGGCGC 4190480 28 100.0 33 ............................ TATTGTCCCAACCAGCGCCCTCTTTCGGGTACA 4190541 28 100.0 33 ............................ CGTAGCCAGGCTTGCTCGTACACCTCAAGACGA 4190602 28 100.0 33 ............................ TTGTAGAAATTAAGACCTGCTATATCCTGTAGC 4190663 28 100.0 33 ............................ TCAACATTGCTGAAAAAGCTGAACGACGGAAAT 4190724 28 100.0 33 ............................ TTCCGGGTTGGTGATGATGATCATATCGGTACC 4190785 28 100.0 33 ............................ CCGGGGAATCTACTGCCTGAAGGGTTGAGCCAA 4190846 28 100.0 33 ............................ TAAATTTTATCGTCGCGGTCTTTGTGGTCGGGG 4190907 28 100.0 33 ............................ CACACACCAGGAGAAATAAGTGTCGACTATTGG 4190968 28 100.0 33 ............................ CACCGATTGATGCCGCGCCGTAAGCACGATTGA 4191029 28 100.0 33 ............................ TTTATCGACTGGTCGAAAGATGCGCTGCTCACT 4191090 28 100.0 33 ............................ CGACAGCCACAAGTGAATGAGGTTAATAGTGGC 4191151 28 100.0 33 ............................ CGGTGAACGCGTTGCACTGCGTAGCGGTGGCGT 4191212 28 100.0 33 ............................ TCCGCTTTAACAGCCAGCGACGCCAGCGCGTAT 4191273 28 100.0 33 ............................ TCCTCAAGTGGTACGAGGACGGCGACAATAGCG 4191334 28 100.0 33 ............................ TAATTACCGCGCCTTGCGGGACGTAGGTCTCGG 4191395 28 100.0 33 ............................ TGAGCACGGGCTGACCATCAGTTTTGCTCGCAA 4191456 28 100.0 33 ............................ CAATTCACTGCGCTTGATGGCAAGGTGGATGAA 4191517 28 100.0 33 ............................ CGGGATTATCTCACCCTCAGAGAGCGAATCGCC 4191578 28 96.4 33 ............T............... TTGTTTTTCTGCCTGGGGGATTGTGCCGCCTGC 4191639 28 96.4 33 ................A........... TGGACGGCGACGTTGATCCAACCTGGTACCCTG 4191700 28 96.4 33 ...........A................ TACGGCACCGAATCGCAGCTGCTGGCTCAGGTT 4191761 28 96.4 33 ...................A........ CGATGAATGGCCAATGATGACGGCATCCCAGTC 4191822 28 96.4 0 ..............G............. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.1 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGGCGATACGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATTAATGAGCTAATGGGAGGAAAACGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGAGGGCGAATGAAACTGTGGTTTGTCGAACCCCGGCCGAACGTTTTCGTCTCAGGCGTCAAAGATTCGGTTGCGCAAACCGTCGTTGATTACCTGATGCAGTACACGCCCGCGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGCTATGAAATTCGCTACAAGGGCGAGGTCAGGAAGCCGATTATTGAGGTCAGTGGGTTACAGCTTATTATTGAGACCCTAAAACTGTCGTAATACATGGATATAGTGTTTTAATTGTCGCTCTTTCACAATATATTGGT # Right flank : CCAACTTCGACTGCGTTATCGCCCGTAGTGTGGAAGCTTGCTCCCAGCAGGCAAGGCGTTTTATGGGTTTTAGCCGTCTGCCAGATGACACACCGCTTCGATATTGTGTCCATCTGGCGCAATGACAAAGGCGGCGTAGTAATTGGCGTGGTAATTAGGCCGCAGTCCCGGCGCGCCGTTATCCTTGCCTCCGGCGGCCAGCGCCGCGTGCCAGAAGGCATCAACCTGCTCGCGGCTGTCGGCGCAAAAGGCGATATGCAGCGGCGCGGGTTTATCTTCGCTTTGATAGAGGCATAAAGAGGCATCGTTCGCCCCGGCTAGCTCCGCGCCGTAAGCCGGCTCGCCTTCGCCTGCCAGCGTCACGCCGAGCGGCGCCAGCGCCTGTAAAAAGAATGCCTTGCTCGCGGCATAATCACTGACGCCAAATTTGACATGATCGAACATAAATTCTCCTCGGTATTGGAAATATCTGTACGACATCACCGTGTCGTTAAAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //