Array 1 63655-63913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYB01000121.1 Pseudoalteromonas luteoviolacea DSM 6061 contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63655 28 100.0 32 ............................ AGTTGAACTGCACCTATTTACACGAGGGGCAG 63715 28 100.0 32 ............................ CATACAAGCAGCTTAACGACAGGCTTAGTGAT 63775 28 100.0 32 ............................ ACTTTCAGAAAATGAAACATTAGACGCTTCGT 63835 28 100.0 32 ............................ ACCACGGGCTTGGTGATGACGTGATTGTATAT 63895 19 67.9 0 ...................--------- | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 32 GTTCACTGCCAAGTAGGCAGCTTAGAAA # Left flank : ACCGACACCAAACGCTTTAAACACTATGCCAAGGAAGTCGAACTCACCAGTTATATCAACCAGTTTTTAGACGACGACGCATTTCGTAATATCGCCCTTGGCCAAAACTATTTTGACCTGATGAATCTGGATTTCGAAGCACCAGAGATTTGTAAAGGGTGATGGGATGCTTGTTTGAATGAAAAACAGCAAGCTATAAAAGAGCGTGTGGGAGTAATTGAATGCTGAATCTTTTTTAAACAATAAAAGTGCTGTGAAAACATTGACTAAATGTATTTACTCGGGGAGAAACTGATTTTGTGCTTTAAGAATTTGACAAATGTAAGGTGCACTTAAACTTGGTGTGTACGGCTTTCAGTGGGGAGTTTTACCTTGTTTTAAACAAGGTGAACTTAGTTTTTAAAAATCAATGGCTTATATTTTTAGTAAAAAAATAGGGTATTTTGAGAAAATCTTTACTTAAGGGCTGTTTTTGTATTACTTTTTGGATATTTCTTATA # Right flank : | # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCAAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCAAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 172936-170843 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYB01000158.1 Pseudoalteromonas luteoviolacea DSM 6061 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 172935 28 100.0 32 ............................ ATCCAGCTTGATATGTCTAAGAATCGCGAGCT 172875 28 100.0 32 ............................ ATCAAACAATGTATTCAATGTTAACCCCATAT 172815 28 100.0 32 ............................ ATTCATGGTGGCGATACCTTCGCGCATATCCC 172755 28 100.0 32 ............................ CACCAACTGGCTATCTTCGTAAATCTCAGAGA 172695 28 100.0 32 ............................ CTGAGCAGGTGCTGCTTCATATGTTCTGTTTT 172635 28 100.0 32 ............................ AACACCATCAGCCATTGAGCGTGTTATAGTTT 172575 28 100.0 32 ............................ AAAAGTGTCAAACGGAGCTGCGGTATCTTCTT 172515 28 100.0 32 ............................ TGAACGCGATATTAAACAAAAGTTTCTCTGCT 172455 28 100.0 32 ............................ AGTTTCAACAATGCAGTAAACACTATCTAGAG 172395 28 100.0 32 ............................ GCGATTAACAGTGCGAGGGATGACGTTCTCGT 172335 28 100.0 32 ............................ ACCCATCAAACGTTGGTCATTTAATAGAGAGC 172275 28 100.0 32 ............................ TTGCTCGTCTTCATCTTCACAACCGTCATAGC 172215 28 100.0 32 ............................ TATATCCACTCTCAGGTAGCCATCTGCATTCT 172155 28 100.0 32 ............................ GTTGTAGGTGCTATCGGCTTATCAAAAGTTTT 172095 28 100.0 32 ............................ TTCAAGGTATGCGGTAATGCGATGGTTGCAAT 172035 28 100.0 32 ............................ GTTATAGCCAGTGGCCATGATGTGAATAGTCC 171975 28 100.0 32 ............................ TGTTTTGTACGATATTTCAATAGCTTTTCTTT 171915 28 100.0 32 ............................ TGTTTTGTACGATATTTCAATAGCTTTTCTTT 171855 28 100.0 32 ............................ TTAGCAAATCTGCACCACTCACCAAAGCTGCA 171795 28 100.0 32 ............................ ATCCTCGCAAAAGTCGGCAATTTCGATATTTT 171735 28 100.0 32 ............................ TGCATCATAAATTCAAAAACAATAGAGAGCAG 171675 28 100.0 32 ............................ ACAGGGACTAACGTACCTATTACAGTAGAAAC 171615 28 100.0 32 ............................ TCACTTACCAGATTTGCATGAGAAAAAAGAAA 171555 28 100.0 32 ............................ ATTAAAACATGGCCCGAGCACAACTATAGACT 171495 28 100.0 32 ............................ TCAGCGCATGATTGTTGGCGGAGATGTTAAGA 171435 28 100.0 32 ............................ GAACAAACTGACAACTTAATGATTTTGTCGAG 171375 28 100.0 32 ............................ TGTAATTGTATTAATGAGCGCATTAGCTTTAG 171315 28 100.0 32 ............................ ATTGCTAGCCTTTTCAATAATTTCAATTAAAG 171255 28 100.0 32 ............................ GAGCTCACCAGATTATGAGCAAAGAACATTTA 171195 28 100.0 32 ............................ ATCATCTGTGCCACATGGCATGCGGTCAACAA 171135 28 100.0 32 ............................ GCACCAGCCACGCCAGCCGCACCAGCCAAAAC 171075 28 100.0 32 ............................ TAGCCTTATTGTTAAGCTCAACCTCTCTTAAC 171015 28 100.0 119 ............................ TTAAATCAAATTATAAACCAGCGTAAACACATCCCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGGCGGT 170868 26 89.3 0 T.....--.................... | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 34 28 99.7 35 CTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAAAGAAGCCACTTGGGTGAGTTTTTCTCGTCAACATATAAAGTCGCCTGAGCGTATTGAGCGTGAGATGCAAAAAAAGGCTGAACTATGGTCTGCTAAAAGTGGTAAATCACTTGAGGAGTGCTTACTTGCACTTGAAAAAAGCAAACCAGATATCCATAGCAAATTGCCATTTATTTATTTGCATAGTCAGCAAACGAAAGCACGAAAGCCGGATAAAAACAGTAAGTTCCCAATGTTCATAAAAAAGCAAGAAGTGGATACTCTTTATCAAGGATTATTTGATTGTTATGGCTTAAATAGTAAACGCAATAAAGATAATGACATTGGCTGCGTACCTCACTTTTAACCAATAAAGGGTGTTTTTACCCTTTATTTTCGCTCTTTTAAAATCTGCATATAATACAAGGAGTTGCGATAGGTTGTTTTTAACAAGGTAAAAATAGGATTTTTACTTTAATGGTCTGTTGCAACTTATTTTTTTTTCATTTACTCTATA # Right flank : TTAAATCAAATTATAAACCAGCGTAAACACATCTCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGACGGTTTTCACCCACACAGGCAGCTTAGGTGATGAGCGACCGAAACGAAGTTTCGCAGCGCGAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGAAGGATTTCAGCTCCGAGTTAGCTATGTATTCCGCTTCACTGCCATACAGGCAGCTTAGAAATTGAATCAAATTATACATCAGCGAAAACACATCCCTGATGGCTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGTGCGCACTCCCTTGACTCGAGATGGGTTTCAGCTTCGTGCTAGCCAGAGTTTATGTTTGGGTCTATATATCGGTCCCATAAAAATTGTAATGGGGGTTTCCACTTTGGCGCTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 183538-182970 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYB01000158.1 Pseudoalteromonas luteoviolacea DSM 6061 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183537 28 100.0 32 ............................ AATGATAACGTGAAGGTTTACAGTATTTCAGA 183477 28 100.0 32 ............................ TGACTACCAGGATATCAAACTCATGAAAATCA 183417 28 100.0 32 ............................ GCTAGAAGGTTCTGAAACTCTTCGACAACTCC 183357 28 100.0 32 ............................ AATAACAGCGAGTGTTCTAGACCCAATTAATT 183297 28 100.0 32 ............................ TTCTAGAAAACTATTCTCTGGCTTTGGCTCTG 183237 28 100.0 32 ............................ ATAATAAACGCATCGGCCAAGTTTGGGGAATC 183177 28 100.0 32 ............................ ATTTGCTCGCGCTTGCCAACTTTGGCCCGATA 183117 28 100.0 32 ............................ AGTCCAAACTCCGCTGCCAGATCATTAGAAAC 183057 28 100.0 32 ............................ CCACACATCATAAGGTGATGGTTGCACCGGGA 182997 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCAAGTAGGCAGCTTAGAAA # Left flank : CAAGTAGGCAGCTTAGAAAAGCCCTAAGTGCTGGTAAAAGCCTGTACCAA # Right flank : TTAAATCAAATTATACATCAGCGTAAACACATCCCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTCCTCGTTCAAACCTAGCCAAGCTGCGCGGACTCGCTTGACTCGAGACGGTTTTCACCCACATAGGCAGCTTAGGCGATGAGTAACCGAAACGAAGTTTCGCAGCGCGAGGAGTGAGAGGCTTAGAATAAAATCATGGATGACCGATGTAATCAAGCTGCATGTAGGAGGGTATGTAGCTATTGCTATACCCTCACTGTTGTATAGTCTATTTAGAATACTCACTCTTTAGTTGTTGCTGATCAATGACAGCCTTTGCTGTCTCTGATACATTTATTTTACGTTTAATTTACTGAGATTTGTGTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCGGTGTTATTTCGGCAAGGAGAGATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGTGCTAGGCGTTACCTAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCAAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCAAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //