Array 1 376221-376431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQM010000004.1 Salmonella sp. 32020114201800008SM NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 376221 29 100.0 32 ............................. TTGTCCTTTTTCATGTTGATGATGTCGCCCTC 376282 29 100.0 32 ............................. GCCACTAACATTTTTGGAGTTGGCTCAACAGG 376343 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 376404 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTATCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 386160-388144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQM010000004.1 Salmonella sp. 32020114201800008SM NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 386160 29 100.0 32 ............................. CGACCTCATATAATGGCGGCGTGGCGATTGGG 386221 29 100.0 32 ............................. ACCGCGCGGGCCTGTTGATAGACCAGTATGGC 386282 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 386343 29 100.0 33 ............................. CTGGGCGTTGAGTGCCGCGAAATGCACGAACGC 386405 29 100.0 32 ............................. GCCTGCCTGTAATCGATGATCACCAGTGCCGA 386466 29 100.0 32 ............................. CGGAGGCGCGTTACATCTTCCGCTTTGTCGCT 386527 29 100.0 32 ............................. GCTCCCGTGCGTTTTTAAAGGGGGTTTAATAG 386588 29 100.0 32 ............................. AAATGTTTACACCTTCAAATACAGGTGAGAAA 386649 29 100.0 32 ............................. TAGGCGGCACTGCATATACGGTCCGTAAACTA 386710 29 100.0 32 ............................. GCGAAAATTGCAGGAATCTACGCCAACGGATT 386771 29 96.6 32 ............................C CCTCAACATACTCACCTCGCTGGGCTGCGAGC 386832 29 100.0 32 ............................. CAGGCGATGATTGCGGGCGCGCTGCAAGCGGT 386893 29 100.0 33 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTAC 386955 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 387016 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 387077 29 100.0 32 ............................. TCGTCACGCGACATGCTGGACAGTGTGTGTAA 387138 29 100.0 32 ............................. TTATTGTTTTCATTTTTAAATATTGGATATAT 387199 29 100.0 32 ............................. AATTTGCTCCGGAAATAGATAAAGCGCAGAAA 387260 29 100.0 32 ............................. TCTGCTGCTGATACCGTGGAAGTGGTGGCGCA 387321 29 100.0 32 ............................. CATTTGTAGGAGCGATTGTTGTAGGACAGTGT 387382 29 100.0 32 ............................. ACACCGCCCCTAAATCAGCGCAGCCCGCACCA 387443 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 387504 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 387565 29 100.0 32 ............................. GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 387626 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 387687 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 387748 29 96.6 33 .............C............... CAACTGGTGATACGGTTATGTCTCCGTATCGCA 387810 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 387871 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 387932 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 387993 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 388054 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 388115 29 89.7 0 A...........TC............... | A [388141] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.7 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : AGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTAATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //