Array 1 522581-523028 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMQP01000002.1 Vibrio sp. 12-2(3-a) NODE_2_length_834684_cov_40.836306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 522581 28 100.0 32 ............................ GTCAAGCGTTGGGTGACCAAGGGGCGCAAGCG 522641 28 100.0 32 ............................ AATAACTGGGCGTTTTTCTTGAAAGCCTCGCC 522701 28 100.0 32 ............................ GCCGCGACTAAAGCCGATACCGCAACCATCAC 522761 28 100.0 32 ............................ CAATACCACATCTTCTATTAGTCGTATTCCTT 522821 28 100.0 32 ............................ ACTCCGAATTCCTGAGTAGACTAACAAAGTGA 522881 28 100.0 32 ............................ GTGGTACATGGCCGTGCTGAGTACGACCATGC 522941 28 100.0 32 ............................ TTTTGATGCACCATGCACCGTACTGTGTAGCT 523001 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCACTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTGAGATGCAGTCCCAAAGCACATCTCAAGATGGGAGCTTTGATTGCTATGGTTTAAGTAGCAAAGCGAATGGACAATCCGCATTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAATGGGTGGTTTTTTATAAGGTAAAAATGCATTTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : AGCGAGTGATCGGCTCTTCTTATGTTACCGTTCGTTCATTGTGTTAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAATAGCTTAAAAAGTTCGCGCTTTATCGCGTCGTTCTAAGATAAACTGCAACATTCATTCATTCATTCATCAATCAAGGAGAAAATTTGATGAAAGCGATTATCTTGATATGTATCACCATAAGTTCCTTTTTAACCTTACCCGCCTATGCCGTTGAATTTTGGCATTCCAATACGGTTTGGGCCGGTCAAGGACAATGTTCGGCTGTCTTTTCATTTGATAGTGAAATGAATGAAATAATCGATCTTCAGCTTTCAGTTTCTGCTTTTAATCAGGTCGGTGAAGAAGTTGCATCGGGGGTTATTGAAATTGCACACTTTGGCCAATCATCAGCTGATCGTTATATTGACGCATACTTAGAGAGCGAGGCTTTTTGTGATGAACAACTAACCATCTTAGTTAAGGATGCTCAAGCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 495327-496810 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMQP01000001.1 Vibrio sp. 12-2(3-a) NODE_1_length_1159476_cov_39.531582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 495327 32 100.0 34 ................................ CAGACTCAAAGTCCTCAGGCTTGCAATAACCAAG 495393 32 100.0 34 ................................ TATGATTTCCTCGGCGCTTGGCTCGTCTTTATAT 495459 32 100.0 34 ................................ TCGTCAGTCAGATTAAACCACTCGCCTTTAATTG 495525 32 100.0 33 ................................ GTGTCTAGATCTGTGAATATTTTTGCGACAGAC 495590 32 100.0 34 ................................ CGTTAAACCGCTAATGTAAGTCGTGGGCACAAAC 495656 32 100.0 33 ................................ TGGGCAATTACGGTTAATAATGAAGCAATTGAA 495721 32 100.0 34 ................................ TTTCTCTAGCCTATCCAGAGCGCGAGAGTTTTTA 495787 32 100.0 35 ................................ TGTAGAGTGGATGCTTTTACTAGCTCGTAATACTC 495854 32 100.0 34 ................................ GTAAGTCTTGCCCTTTAACAGCTCTCCGTGATTT 495920 32 100.0 35 ................................ TTTGATACCGACCATCCGGTTGGCGAAGAGGGCAA 495987 32 100.0 33 ................................ TTGTATTTTCATTGCCCTAGCTCCATCAAATAC 496052 32 100.0 36 ................................ CGAATACCACGCTTCCTTCCTTGCCCGTTTCCATTC 496120 32 100.0 35 ................................ ATAACCCGGCGCTAAGCGAAAAATGCCCGTCGGCT 496187 32 100.0 33 ................................ TAGCAGACGTTAAAGGCGATATTGAACTATTGG 496252 32 100.0 33 ................................ AGGATTAAATCCGATTAAAAACGCTTCTGTTGG 496317 32 100.0 35 ................................ TTTTTCTTGGTCTCGCCGCCATTTCAACTTTCTCC 496384 32 100.0 33 ................................ TATCAAGGAGAACGCGCCAGTGGTGATGTTCGC 496449 32 100.0 34 ................................ GATCTCTCTGCGAGTCATCAATCCTTTCCACCTT 496515 32 100.0 35 ................................ AAGCTAAAAAGAACCGAGCGCATTAATACCAGCAA 496582 32 100.0 34 ................................ ATGCAAAGAAAAGTGATTTGCTGTTATGAGATTT 496648 32 100.0 34 ................................ AACGGATCGGAATGGATGACTCCGGGGTTGCGTT 496714 32 100.0 33 ................................ ATTTTTGTATCCTTGTCTTGTTGCTAAAGTTTC 496779 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTTTTGGTCACCTACGATGTATCCTTTGCCAGTGATGATGGGCAAAAACGCCTCAGGCAGTTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGCCTTGGGTTCTCAGTAAAATACTGGGGATCTAGCGATGGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTCACTCAAAATAGTTTTCTTCTACCCAACAAAGTTAGCGGCAAACTATAATCTGTGCTAATTTATACCTGCCTTTCACAATAGGCA # Right flank : TCCGCTCCGCGGGGGTAACTGGAATAATGGTTCGGGGCTCGCCTCCTACAGGTGTAATATTTGATCGATGACGTGGCGGTTTTCCTCATGGCAATTTTGTGATGAGCGATTTTTTCGTCAATATAGTCACTTAAATCATGTTTTTATCGACTATATTAGAATTGGTTGTTATCCTGTAACGCTTCACATGGCGGTTAATATCATTAGGTGTGGGGCGATGGGATCACTGTTGGAAGTGAAGCAACTGAGTACGTATAGCCAACAAGGTTGGCAAGCATTAGTTACTGCGTCGTTTGAGGTTGATAAAAATGAATGTATCGCAGTTATTGGGCCGAACGGCAGTGGTAAATCGAGCTTACTTAAGTCGATTACTGGTGAATATTTGGCTGTTCAGGGTGAGTTACGTATTGATGGCCATAAACTGAGCGATTTATCTCTCCAACAAAAATCCAAATTAATTGCTGTAGTCGCACAAAATGATTACGTCGATCCTCGTTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //