Array 1 934278-935699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036316.1 Calycomorphotria hydatis strain V22 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 934278 36 100.0 30 .................................... CTGTACACGCTAAGGTGAATTACGTCGAAA 934344 36 100.0 29 .................................... CTCTGAGTGTGTCCACGGCACGCCGTATT 934409 36 100.0 30 .................................... AAGAAGCCAGTTCTCTGTTCACGACCATTA 934475 36 100.0 31 .................................... CCCAGGGCACACCTAATGCCCTGCGTTATTC 934542 36 100.0 30 .................................... GAATTCAAGCGGCCACCGGCCAAGGCCATC 934608 36 100.0 30 .................................... GGGCTGCCGGAAGTACCGACGCGTCGATTA 934674 36 100.0 30 .................................... CAACGCAGCCCGTAGCGAAACAGAAGCTGA 934740 36 100.0 30 .................................... AAGAGTGTGGGTGCCTCGTGTTCGACGATG 934806 36 100.0 29 .................................... CCACGATCGTGCTTGGGCGGTTCTCAAGA 934871 36 100.0 30 .................................... CGATTTGATCGATGCGCTGCGTTTATTGGA 934937 36 100.0 30 .................................... CCTTAACGCGCAGACTTTACGGATCGAAAG 935003 36 100.0 30 .................................... CATCCGCAAGTACGGTGCATTTCTTCTGGC 935069 36 100.0 30 .................................... GGCGACGTTCGCATGCTGTGCGCATTGCAA 935135 36 100.0 31 .................................... TGGAGAAGGTCTGGAAGGCGTATCCCTAATG 935202 36 100.0 30 .................................... GGCTGCGGGGTGCATTGTTGTCACGGCTCC 935268 36 100.0 31 .................................... TCATCAAATCCCGCTGGAGGAAACTGCAAGA 935335 36 100.0 30 .................................... ACTATGTCAGCGGTGACGCCAACGCAACTG 935401 36 100.0 30 .................................... TGCAGGAATAGTCGGTGGTGCCTTTGGGCA 935467 36 100.0 30 .................................... GCAGGTCAGTCCCATAGCAGGCGGCGATGT 935533 36 100.0 29 .................................... GGTGGTGTTCTCGCCTGGGCACAACTACC 935598 36 100.0 30 .................................... TGAATCATGTCGAGACGACGGCTTTCCGAA 935664 36 72.2 0 .........................A.GAATGTTTG | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 98.7 30 AGTGTATCCGAGCAACGCTTCCCAAGCAGCCACAGC # Left flank : GAAAACAGTTGACGCTGTTCGACTCATTGGCCGAGCTGTCATCATCACTGGTTCGTGTCATTGATGCCGGCTCGGGATCACTCACCTTACCGGAAAGGCTATGGCATGCCTCGGGCCAGCCTGATTGATTCGGGATTTCGAAATATGTGGATGGTCGCCATGTTTGATCTGCCGGTGCAGACCAAAGTCGAACGTCGAGCCGCGGCCCGATTTCGCAAGATGCTTCAACGAGAAGGCTTCTCGATGCTGCAGTTGTCAGTTTACGCACGATATTGTGGCAGCGAGGAATCAGCCAAGACATTCCGTAGCCGTATTGGAAAATCACTTCCCAAAGACGGCAACATCCGCCTGATCAAAATCACCGACCATCAGTTCGGCAAAATGGAGAGCTTCATCGGGAAAAAACCAGTCGAAAATGAGTCTACTCCCAACCAACTGGAGCTGTTTTAATGCCTCCTTTCATCGTAAGTGATTGTCGCTGTTCGAGAAGTGTCCGAGGT # Right flank : GGTGGTCCACTCTATAAACTTGACACATTTCAAGACCAAATTTAGCTCTGTGATTTATCTAACTGACCATACAACACGAATCCTGCGGTGGATTTGATAACTGCTAATAAGTACTTGGCCAGGTGCGATAAAAAACCGCTGGAACGTGCTAACAGCGAGATAATTTTCTAACATCGCGAGCGGCAATCAGTCGGCAGAAGCAATCACATTTCCGCAACCGACTGTTGTGCAATGACTTGCAACTCGGCACCGCGATCAAGGTTTACTTCGCATTCTCATCTGAGGGCGCGAATCTTGAATCGGTTGCGGAGCACTTGCAGCGTTTTGCTCAACGCGCATGGCGGCGACCAGTGGAGATGGAGGAGTTAGAGGGCTATCTAAGGCTGTTTAGTTCCGAGCGTGATGCAGGTGGCTCTATGGCCCAGGCCTTTATTGTCGCGATGAAAGGCGTGTTAACCTCCAGGCACTTCATCTACCTGGTTGAGGGTGAGCCGATGGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTATCCGAGCAACGCTTCCCAAGCAGCCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 3003243-3005123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036316.1 Calycomorphotria hydatis strain V22 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3003243 36 100.0 29 .................................... TCATCAACTCGCCAGTTGTAGGTGAGGGT 3003308 36 100.0 30 .................................... CCCACAGCACGCACAGTCTGGCGCGTCAAA 3003374 36 100.0 30 .................................... TTGATGTCGCGGGCGGCCCGTGCTGACACA 3003440 36 100.0 30 .................................... GCCAACGTACGGCTACGGTCTCGAAGTTCA 3003506 36 100.0 30 .................................... GCGAGGCGGTGTTGCCCTGAAACTTGGTGC 3003572 36 100.0 29 .................................... TACGACGCACTACAACAACGCGACGATCG 3003637 36 100.0 30 .................................... TTGGAATCCTTCGAGGCGTAGTCGGTCGCT 3003703 36 100.0 30 .................................... TTGACGTGATGATGTCCGCGATAGGACGGG 3003769 36 100.0 30 .................................... AAAACAGTCGTGTGATTTTGTGGCCCACTG 3003835 36 100.0 29 .................................... ATATATAAGATAGAACGGGTTGACTTACT 3003900 36 100.0 30 .................................... ACCGCGACGTTGCACGATAACGTGTGACGG 3003966 36 100.0 30 .................................... CCTTTATGTGTTTAATTCCCCTTGCTACGG 3004032 36 100.0 30 .................................... TGGACCGGACGCTGATCACGTCTACACTGT 3004098 36 100.0 30 .................................... GCTCACGAAGGTGACACCATCGCAAGGATT 3004164 36 100.0 30 .................................... TAGCCGCCATGATTCCCCGGTGAAGGTCCG 3004230 36 100.0 30 .................................... AGTTAGGCTCACCGTCCCTTCCCAGATCGG 3004296 36 100.0 30 .................................... ACGGCAAAGTGTTGACGCTGTGGTGATTGA 3004362 36 100.0 30 .................................... ACGTCATCGACCTGGCCCGGCGTGACTTTC 3004428 36 100.0 30 .................................... CCAGGGCGAAAGATAGGTTGTGTCCACTCT 3004494 36 100.0 30 .................................... CACCAGACAGTCGTCTGAACGGTTGGTTCC 3004560 36 100.0 29 .................................... AGATACCGATTACCATCTGATTTTTCGGC 3004625 36 100.0 30 .................................... GTGAGACATGTATTGCGGGGGATTCAGTAT 3004691 36 100.0 31 .................................... GGTGAAATGCCCAAGGCTGTCAAGAAACGAC 3004758 36 100.0 30 .................................... AGTGGTACCACTTCCGCAGAACCCGATCAT 3004824 36 100.0 30 .................................... GCTGAAGTTCCCGCTGATCGTGGCCTGTAA 3004890 36 100.0 30 .................................... AAAAACATGCTCGTCGAAACCGACGCATGG 3004956 36 100.0 30 .................................... GATCGGCTATCGGTCGATCGAGTTCACTGA 3005022 36 100.0 30 .................................... GATGAACTCGATGCAGATGACCCAGAACTT 3005088 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GCTGTGGCTGCTTGGGAAGCGTTGCTCGGATACACT # Left flank : GTTATGCATTAGCGTGCTCCGCTTCTCCATCTTCGGTAATAGCCCCAGACAAGATAAGATTCTCCACTTCTTGGCGCACGGAGGAAGTAACTGTGACAATTTGCGTCCAGTTGTGATTCCGTGAAATCTAGCGTGATGAGTAAATGAGTCCAGCGATCAAAATATAACAGCAGAATTTTTGATCTCTGCAGCTAAAGGACTTTCATAAGTCAGTCAATTGATTTGAATTCCATACCGTAGTGGACACCACGATCGACAATTCAATCCGATAAGTGCACTTCGTAACTCTATTTCACGTAATAGCTTACTCCCAATAGCGTCATTTGCACTTAGCTGAGTCACCATTTCCTCCCCTCACGCTTTCTACTATTCCCCCTTCGTATGCGTAAAACTCGGATAATTGAGGGATGACGAAAAATGAACGTTTATCTATTGGTAGTGTTAGACGTCAGTGATCGAACTCCAAACCTATCTCGATTGTGATCATACGTTTCTTTATC # Right flank : TACCTCGGACACTTCTCGAACAGTGACAATCACTTACGACGAAAGGAGGCATTAAAACAGCTCCAGTTGGTTGGGAGTAGACTCATTTTCGACTGGTTTTTTCCCGATGAAGCTCTCCATTTTGCCGAACTGATGGTCGGTGATTTTGATCAGGCGGATGTTGCCGTCTTTGGGAAGTGATTTTCCAATGCGGTTACGGAATGTCTTGGCTGATTCCTCGCTGCCACAATATCGTGCGTAAACCGACAACTGCAGCATCGAGAAGCCTTCTCGTTGAAGCATCTTGCGGAATCGGGCTGCGGCTCGACGTTCGACTTTGGTCTGTACCGGCAGATCAAACATGGCGACCATCCACATATTTCGAAATCCCGAATCAATCAGGCTGGCCCGAGGCATGCCACAGCCTTTCCGGTAAGGTGAGTGATCCCGATCCGGCATCAATGACACGAACCAGCGATGATGACAGTTCGGCCAAGGAATCGAACAGCGTCAACTGCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGGCTGCTTGGGAAGCGTTGCTCGGATACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //