Array 1 158920-159680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFN01000011.1 Streptomyces varsoviensis strain NRRL B-3589 contig11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158920 29 96.6 32 ........................A.... CGCCCGCAAGAGCCGCAGCGACCGACAGAACC 158981 29 93.1 32 ....C...................A.... TCATCCGCGCCGAAGTCGCCATCGCGTACGCC 159042 29 100.0 32 ............................. CTGCACCAGCACATCGACGCCGCCCGTGGCCT 159103 29 100.0 32 ............................. CACCCGAGATGGAGAACGTTGCTCGTGACGAG 159164 29 100.0 32 ............................. CTGGGCAGTGCCGATGAGGCCATCCAGAGCGT 159225 29 100.0 32 ............................. CATGATGGCAACGGGCAGGTTGGTGCCGGCCA 159286 29 100.0 32 ............................. CACCGACCACCGTAAGGATTTTGTGATGGGTA 159347 29 100.0 32 ............................. GCCCGGGCCCTGGAACTGGCCACCCAGGTTGC 159408 29 100.0 32 ............................. CGGGTCTGGCCGACCTCCTACCGCGGCCCCGT 159469 29 100.0 32 ............................. AGCACGGGCGCGACCAGGCGCCGCATCAGCGC 159530 29 100.0 32 ............................. GTGGCGCGCGTGTGAGCCAGGGAGGTCTGCAC 159591 29 96.6 32 ............T................ GAGGAAGCGACGCTGCCGTGCGTGGCTTTCTG 159652 29 86.2 0 ...A.........C...........G.A. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 GTGGTCCCCGCGCACGCGGGGGTGGACCC # Left flank : TCCGGCACGCCGGCTACTCCTTGGGCCCGAAGCGTACGAGCAGCTCCCGCGGCACGACGACGAACCCCTCATGGGGAGCGACGTCCTTGAGCTGCTTGACGTCCTCGGGGTCGGTCACCGCCACCCCCTGTACGAGGATCTCGCCGCTGTCGAGGTCCTCGTACAGCGTCGGGCACTTCCCCTCTTCCGAAGTGGTACCGATCATCTCCAGCCTCCGGGCCATGATGTCCTCCACGTCCTGGCCGGCCTCCTGACCGACGTGGAGCGCACCGTAGACCCACGAGCGAGAAACGCACCAGCGCGGCAGTGATGCACAACCTTGGTGCTGGCCGCACGTGCACCCACGCCACATAGGGCGCATCACTTGGGCTGGTCGGTACCCTGCCTATGCGCTGCTCTGGGAAGGGCGGAGATTACCTGTGTATTTACCCCGAATGCCGGACTCTGTAGAAGTGAGTAAAAACGGCCACCATCCCGCATAGCACTGCAGGTCACGGCCT # Right flank : CTCACCCCGAGGACAGCGATGGGCCGAGCTGATCTCGTTATGCGTCCCGTCCTTGTCCATGGCCTGCTCCTGCCGGGCCGGAGTCTTCGGCCCCCCGCCGCGCCCGCACGGCACGATCGAGGGCGGCCGGACGGGCGGGACGGGCGCCCGCATGGTCGACGGCGGGCGCAGTCCCTGCAGGTGCAGTCTTCGCGGCACAGGTCACGGAGGGGCCGAGGACGGCGGTGGCCAGCGCATCACCGGAACGCCCGCCCTTCTGCCCGCCAACCTTCCTGCCGGCGCGGTGGAGGGCTCCGGCCGTCGCGTTGAGGGCTGCGGCGTTACGGCTGAACAGGCCCATGACGGCCCGCTTTCGTACGGTGGTTGTCGAAAGCAGGGCGTGCCCCGGGCCGGATTCGATCCGGGCTGTGGCTCAGCGGCGCGGGGCGGCGGCTGCGGCCGGAATGAATTCGGTGTGCGCCTTGCGGGCCCGGCCTCCCGCCGTATCCACGGCCGCGTAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101104-100099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFN01000018.1 Streptomyces varsoviensis strain NRRL B-3589 contig18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101103 29 100.0 32 ............................. GGGACGCTGCACCTGCCGAACCGCGAGCCGGT 101042 29 100.0 32 ............................. AGGTGCGTCGCCTGGTCGTACGCCATCAGCGG 100981 29 100.0 32 ............................. GCGGCCCCGATGGTGTGTCAGATGGAGGCGGA 100920 29 100.0 32 ............................. GACCCGTGGTCGTGGACACCCATCCCGGTGGT 100859 29 100.0 32 ............................. CGCTGCTCTGGTCCCCGGTCCACGGGGCACAG 100798 29 100.0 32 ............................. TCCGGCAGTGGAATTACCGGTCTGCCCAGGGC 100737 29 100.0 32 ............................. AGGTTCCAGGTGTGGCGGATGCTGGCGGCGTC 100676 29 100.0 32 ............................. AACGGCGGTGAGTGGATCGGCGCCGTCGTACG 100615 29 100.0 32 ............................. TTGAGGCCGTGGTGGAAGGGAGGCCGCAATCC 100554 29 100.0 32 ............................. CGCGACGCGATGGCGGGCGTGGCCTCTATGGG 100493 29 100.0 32 ............................. TGACCGGCCATATACGACCGTCTTCGACCGAG 100432 29 100.0 32 ............................. ACACCGACACCGGCTACGGGCTTGCGCTCGCC 100371 29 96.6 32 ............................G TCTGATGCCCGTGTGACCGATGAGCTGATCGT 100310 29 100.0 32 ............................. ACCGAAGAAATCAAAACGTTGGAGCTGGATTC 100249 29 100.0 32 ............................. GGTCGGCTGGTCCACGGTGCTATTCCGTCTCG 100188 29 96.6 32 ..............T.............. TTTTTGCTGGGTGGCCTACTCGTCGCGCATGG 100127 29 86.2 0 ..A..................T....T.G | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CGAAGGCGGCCGCAACTACGGGGAAGAGCCCATCTGGTGACCGTCATCATCCTCGCCAACTGCCCCGCAGGACTCCGAGGCTTCCTCACCCGCTGGCTCCTCGAACTCTCCCCCGGCGTCTTCCTCGGCTCCCCCTCCGCTCGCGTACGGGACGTCCTGTGGGCCGAGGTACGCCAATACTCCGGCAAGGGCCGCGCCCTGCTCGCCTACCAGACCAACAACGAACAAGGCTTCACCTTCGAAACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGACTCACCCTCCTCCGCCGCCCCAACCCCACCCAACCGCACAAGACCACCAGCCCGACCGACCCCCCGAAACAGGGCTGGAGCAAGGCGGCCAAGCGCCGCCGATTCGGACGAGGTTGAAATCAATTGGGCTATTTAATACCTGCATTGAAGCTATGCCGGAATCTGCGATAGTGGGTAAAATCCGCTGTCCAGCGCCATAAAACCCCAGGTCGCGCCCT # Right flank : CCGCCCGGGTGGAACTTCTTGACCGACTTGGTGTTCTCCTCGCCAACATGTTTTCCCCGCGGGAACGCAATCGGGAGCCGACGTCCTCACGATGCCCCCATCACCGACTTCTCTTCGCTCGACGGTCATCCCCGATCAATGCACCCAAGGCCCACGCCCGTTACCGAAAGTCATCACCGTCGAGGCAGGGCAAAGCCCTGGAAGCCCCCTGCACACGCCCTCCCGTCAGGGGGTTTCCAGGGAGTTTGAGCGCGGCGCAGGGGGTTTTGAGGGGGCGTCAGCGCGGGACGGGCCGGGGCGCTGTGGGTGCGGCGTTCTCGGTGTTTCCCAGGTCGGCTGACCACTGGGTCTACCGTCTGCCGCATCCATGAAGGTGAAGTTCCAGGAGACTGCGCGGGGCGGGCTGGCGGGCCACGCTATTGAGCGCTGACGCCGGCCTGCGGGGGGCCGGCGGGGTCAGCAGTAGATTTCTACGTGGTTGGCTACGTTGATGCCGTCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112305-113006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFN01000018.1 Streptomyces varsoviensis strain NRRL B-3589 contig18.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112305 29 100.0 32 ............................. CGCCGGTACACGGCCGGTCCGACGACCCTGTC 112366 29 100.0 32 ............................. TGCTCCGGTCCAGGAAAATGGCGCAAACTGCA 112427 29 100.0 32 ............................. CGCATAACAATCGGCTTTTGTGATCATGGGTC 112488 29 100.0 32 ............................. GGCCTGGAAGACCTCGTCAGCCTGGGAGGCGT 112549 29 100.0 32 ............................. ACCGCTACGAAGATCCGCCGCCTCCACCGCAA 112610 29 100.0 32 ............................. CCGCCCGCAGATAACCCGCCTGTCGGCCCGGC 112671 29 100.0 32 ............................. AAGTGCGTTGCCTGGTTGAAGGCCATGAGCGG 112732 29 89.7 32 ........................TTA.. ACGCCCCCGACCAAGGGCGACGATTGGTGACC 112793 29 89.7 32 ...........A............TT... GCCATCAGGCCACCGCCTTGAGCGCCTTGCTC 112854 29 93.1 33 ........................TT... CCCGGAGGCTCGGAGTACGAAGAGCAGACGTGC 112916 29 86.2 32 ..........TA............TT... GCGACCTGGACGCACCGCGGCACCCGAACGGA 112977 29 75.9 0 ..................AAA..TCGT.. | C [112999] ========== ====== ====== ====== ============================= ================================= ================== 12 29 94.6 32 GTGGTCCCCGCGCACGCGGGGCTGGACCC # Left flank : GGTGTGGTGGAAGTTCAGCCGCACGAGGCGGAAGCCACCCTGCGCGGACGGGCAAGACGTAAGGTCTGCGCGCGTCGGCCGGGGTGAGCAGACGGCCCCGCATGCGCGGGGATCACTGTGAACGTCACCTGGGGCCGCTGCCTCCCCATGGGACAGCCCCGCGGGGGCGGGGGCAATCCATACTCTCCTGTTTGCGGCTGACTGCAGAAGATGACAGTAACCACTTCTGGCAAGCCGCTCACGAGGGGACTCGCTCGTTCGTGGGAATGGGAGCAGTTTGGGGCTTGCTTGAACCCCTCCAGGGTGTCGTGGAGGAGTCGGCACTGATTCCCCGGGTGGTGCATGGCACTACCCTTCCACTCGTCACCGCATCGGCCTGACCGCCAAGATCTGCGAACCGGCGCAAGGTGCAATCTAGGAGTGGAATGCGGCAAATGCCGGAGTCTGTCTTAGTGGGTAAAATCTGGTCTCTCATGGAATGAAACTGCAGGTCGGCGCCT # Right flank : CTTCCGTGCCCGGAGCCCTGCGGGTTCGTGAAGGGAGTGCGCCCAGTGCGGACGACGGAATCCCGAACCTCGCCGACAGGCGAACAACGGCCTGCCGGAGGAGTTCTGGCCCTTCATCTTTTTTCCCTGGCCAGTTCTTCGAAGGCGGTGGCGTATTCCTCGGCAGTGGGCGTGGCGAAGGCCTTGCTCAGCGTCTCCCCGTATGCCTTGAAATCTTCTGCCGATGGGCACTGAGGATTTGCGGGTTCTACTCTCCCGCGGGCTGTGAGGCGGCCCGTGGCGGCCTCGCGGAGCTCCAGGAGGTACCTGCCGGTTCGGAGGGGGACGGTGCGATCGGCGTACGTGCACCGCTTTCCGCTGTCGCGGTGGTCGTCCTTGTCGATGCCCGTACAGCCGACCAACTGCACCCGGCGGACGTCGTGTTCCCGCCAGGTGAGGTGAGGGCTGTCGGGGAGGGCGTCCAGGACGATCCGCGCGCGGCCGGGGTTTCCGCCGTTCTG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGCTGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 437326-436625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFN01000003.1 Streptomyces varsoviensis strain NRRL B-3589 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 437325 30 93.3 31 .............C...............C GCAGATAGCGCAGTGGGGGACAGCCAATCCC 437264 30 96.7 31 .............................A GGGCGTGGCGCGCGCTCACCTCCTCCGGCGT 437203 30 100.0 31 .............................. TGGGGTTCCCCCGCCCGTAGGTCGCGCTCCG 437142 30 100.0 31 .............................. GCTGTGGTGGAACGTACGAGCCTGCCAGCCG 437081 30 100.0 31 .............................. TGCCAACGTTGTATTTCAGCGCCGACAGCAC 437020 30 100.0 31 .............................. GAAGCTTCCGCGCGAACGCCATGCGCCACTG 436959 30 90.0 31 ..............A..........C...T ACGTCGCGGTCCGGGGAGCCTCGGCGTACGA 436898 30 93.3 31 ...................A.........A AACGGCCGAACCCGCAGATGAGCGCCCGCAC 436837 30 90.0 31 ..............A..........C...C GGAGCCAGTGATAGAAAGAGCCGAGCTCATT 436776 30 96.7 31 .............................C AGTCCAAGGCCGACCGCGACCCGGCCGAATG 436715 30 90.0 31 ........T...TG................ CGATGCACGGCAAGACCGTGACGGTCCGGGT 436654 30 80.0 0 .............C.......C.CCC...T | ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCCGGTGGGGCTCAGGCCGCCGTTTCCGCCGCCGCGTGCATCGCACGGTCCACAGTTCCCCTGCGGGGTACGTGGCATCGCAACGACCCTGACCGGACGCGCACACGGCAACTGGTCGCACGGGCCTGCCATGTGGGCACGCGGGGCCGTGGGCCAGTAACGCCGGGGTGTGGCGTTGTTCGGCGTACGGTACCGAGCGGGCCGCGACGTACGAGGCGCCGCGGTTCCCGCTCGGCATACCGGCTGGCTTCGTGAGCGGTCTCCATGCCGCTCGCGAGACCGGCTGGCCTTCAACGGCGTCCGGGCTCGTGCCGGCTGGCCGGTGCTCATGATGCGCGCTGGCTCCGGGGCGGGGTGAGGTTGCGGGCACTTTTGGTCGGGCTTTCCGCGTTGTTCCAGTGGTGTGTCATCGGTCATGGGGAGTTTTGTGCAATATGCCGGAGTCTGCACAAGTGAGTAAAAACCCAGATCCACGAACCTGAAGCACCAGGTCACGCCCT # Right flank : CACCCCAACCGAAACCGCAACCGGCAAATCACGGCATCCGTGTCCCGCCGTACCGCATGTGCCATTACCGCGCCCCGCTGGTTCTGGAGCAGTCGCTGCCAGACGTGCGCGGGCTCGACCTCTGGGATGAGTACCGTGACGCGGTTGGAAGGATGGCGGTCGGTCATGGTTTGGACGTAGTCGACTATGGGGCGGCCCAGGGCCCGGGTAGGGGCCGGGAGTTCGATCAGATCCACCCCCGGTTGCCATAGTTCCCAGTCGCGGCGTAGGGACTCGGCTGCTCGGCGGCCGTCCGCGTCGGGTTGGGTGACCGTTACCGCGCGTACTTCGTCACCCAGCGACACAGCGGCCGTCAGGGCCTCGCTGGTGAGGCGGGAGAGGTGGGAGACCGGGACGATCACGACCGAGTGGCAGCGGTGCGGGGGCTCCGGGACCCGGCCGAGGCCGAGGCGTTCGCCGATGCGGGTGTATGCGCGGTGGACGGTTTCGAAGGCCAGGAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440881-440207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFN01000003.1 Streptomyces varsoviensis strain NRRL B-3589 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 440880 29 96.6 32 ..........T.................. CTGGCGGCGAGCCCGGAGCAGATGGGCCGCTG 440819 29 100.0 32 ............................. TGAAGCCTCGCCGACAGAATGTCAGCGAGCGG 440758 29 100.0 32 ............................. TGGTCCATGATGTCGCCCTCGATCTTCGCGGC 440697 29 100.0 32 ............................. GGGTCCACCATCCGGTGGACCGTGGGGCCGGT 440636 29 100.0 32 ............................. ACCTCGTAGAAGTCCGGAAGACGCCGCACCCC 440575 29 96.6 32 .................A........... GTCGAAGGCCACAGGGGTCCTTCCGGCTCAGT 440514 29 100.0 32 ............................. CGCCTCAGCCGCCAGTGGAAGGTCCATATCCT 440453 29 82.8 32 ...G..T.......T...AA......... GCCAGCGCCGTGCCTTCGGGCGCCTGGCCGTG 440392 28 89.7 32 ...G......T..........-....... TCCATCAGCGTGGGGTGGCATATCGCCGGTGT 440332 29 96.6 67 ...G......................... GGCATCGTCGGAGACATCCGTTGGGCCCTCTTGTGGTCCCCGCACGCCGGGCGCCCGGATCGCCGAA 440236 29 75.9 0 .C.G....A....A.......A..C...G | A [440226] ========== ====== ====== ====== ============================= =================================================================== ================== 11 29 94.4 36 GTGCTCCCCGCGCCCGCGGGGGTGGTCCC # Left flank : GCGGGGCGCTGCTTGCAGCGGGCCTCAGGCCCGCCGGTCCGGCTGCCGCGGTCCGCAGTCTCCTGGCGGGGTGGGCGTCACCGCAAGGACCCTGACTGGCCGCACGTATGCGACAACTGCTCGCACCGTCCTGCGATGTAGGCACGCAGACCCGTGAACCAGCGACGCCGAGATGCGCTACCGCGCGGGCCGCGACGTACGAGGCGTTGCCGTTCCCACTCGGCACGCCGACTTCGTGCGCGGCCTCAATGCCGCATTAGAGACCAGCGCGCGATCCGCCGGCCGAGAACAGCACTTCCGCGACATCCGGGGCGGTGCCGACTGCCCGTTGCCCGTGAGCCCCGCTGGCTCCGCGACGAGGTCGCGGGCACTTTGGCCGGACTGCTCGCGTTGTCCCAGCGATACGTCATCGACCATGGAGAGTTTTGTGCCGTATGCCGGAGTCAGCACCAGTGAGTAAAAACCCAGACCGGCCGACCTGAAACAGCAGGTCCCGCCCT # Right flank : AACTGGGGCCCCGCGATGGAATCGCCGACCGGTGGTCAGTTCCCGCCCACGGCCGTCTGCGGGAGGCCGCATTCACGCCGAGGGTGGTTGGTGGCCCGGGCGCGGAGGGGGTCTCAGGTCGCTGCTTTCGAAGCCGCGCCCTGCGCACGTACCGGCGCGAGTCGGCATGCGGCGATGCTTCCGCCGCCCGGCGCCGGGTGCCGGGGAGCCGGTGACGGAGCACCAACCGCCGGAGGCCCCGGCGTAGCGTTCGTGGCATGGTGAGTGGACAGCACTTGGGCGCCAGGGTCCGGCGGTTGCGTCGGCTGGCGGGCCTCACGCAGGAAGGGCTGGCGGAAGCCTCAGACGTGTCGGTCGATGTGATCCGCAAGCTGGAGCAGCAGCGTCGAGGGTCCGTCTCCCTGCCAACCCTGCACGCGCTCGCGCACGGCTTGGGCGTGGAGTTGACCAGCCTTATCGGCGACCCGCCCGGCGCGCCGTCCACAGGGGAAGCGGACTCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 443928-443470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFN01000003.1 Streptomyces varsoviensis strain NRRL B-3589 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 443927 29 100.0 32 ............................. TCGCGGCACAGGCGGTCGACTCCGGCGGCGAC 443866 29 100.0 32 ............................. CGAGAAGGGACCACGCGGCGGGGTGCGGGTCA 443805 29 100.0 32 ............................. CCCTACAGCGCGTACCTGAGCGGCGGTGAGCT 443744 29 96.6 32 ........T.................... AGCAACACCCCTGCCGCCTCGGCCACGGCTGC 443683 29 89.7 32 ............CGT.............. CGGCTGTACCGGGGGAGCACGATCCTGTGGCG 443622 29 89.7 32 ............CGT.............. CCGAACAACTGGCTGAGGGTGTTGGAGGTGAT 443561 29 96.6 32 .........................C... TCTGCGACCGCTGTACGCCCGGCATGCGAGGA 443500 29 89.7 0 ....C.........C............T. | T,G [443475,443478] ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTGGTCCCCGCGTAGGCGGGGGTGGTCCC # Left flank : GCTCGGCCCCGGGCTCGCCGTACTGGTGATACCACTGAGAGATGACGGGCGCACCGCTCGCCCCTCCGCCCTCCCGCCCGGTATTGGACCCACACGCGGTGGCGAGCCCCCCGGTCAGGACAAGCCCGGCCAGACTCCCACCACTTGCCATGAGCCGCCTGCGACTGATCGGCATAGCACGTACCCCCTCGTTTCAGCACGCTTCCGCTCACTCCGTCGACCGCCTGCGATCGTATGGCCCAACGATCAACGATGGAGGGACTTTGTGATAGGGGGATTGCGGGAGTGTGGCGGGCGGTCGGGGTGGGGCGGGGGCTTGGTGCCTGGTGCCTGGTGCCCGGGCGCTTCGGCCCGTGGCCGGCTTGGGCGGCGGGGGGTGGTGAACGCGGTGGGGGATTCCGGCTGGTGAGGGGGGAGAGGGGTGTTTGCGGCGTATGTCGGACTCTGCGGAAGTGAGTAAAAACCTGGGTATGCCGTCATGAAGCAGCAGGTCGCGGTCT # Right flank : GTTGGAGGCCCGTCTGCACCACACCTGGGCGAGGGAGACTCCGGCCTACAGTTCTGGGGTGAGGCCGGAGCGGCGGGCGAGGTTGACGAGGTCGGGGCGGCTTCGTTGGTGGAGGATGAAGAGGACGCGGAGGACTTCGCGGGCCATGGGGTGGATCTCTGCCATTTGCGGTGCGACCTCGTGGGCGCGTTTGAGGGCCTCTTCCGCGCCTCGGATGTCGTTGAGGTCGAGACGGGCCCGAGCCGTGTCGATGCAGAGTCGTCCGATGCGGTTCGCGCCGAGCCCGGGGACGGGTTGTCCATGAGGGGCTGCGCCATTTCAGAAGCCCCGGTCGGGGCGGGCCAGTTCGACGTGGGCGGCCAGCTCGTACAGCGCTTGATTGCCCGGCCCAAACGTGAGGTTGTGTCGCAGTACGTCGCGCGGGAACCGCGCCGCAAGGGCCAGAGCCCGCTCGTTGTGGGCCGCCCACGCGTTCTGGTCCTTCGCCCTGCTGGCCAGCA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTAGGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //