Array 1 179191-179452 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000002.1 Synechococcus sp. 65AY6A5 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================================== ================== 179191 31 100.0 40 ............................... GAGGAGAAGCCTGCCGACAAGGCTTCTCCTTCCGAGTTCC 179262 31 96.8 54 ....................G.......... TTTGGAAACTCTCCCTGCTGTGTTCCAGGGATGATCTGGATCCCCTGAAGTTAT 179347 31 93.5 44 ......A.A...................... CGCTCCCGGCATTCCGAGAGCGGCAAAGGTTTTAGCAGTGTTTT 179422 31 77.4 0 ...............TTG....G.CA....G | ========== ====== ====== ====== =============================== ====================================================== ================== 4 31 91.9 46 CCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCACTTGGCACAAAGTTCC # Right flank : GAAAAAACTAGCCCTTGATACACAGAATGGGTCTTAGGCGCGCTACGAGTTTCGCGATCTTGGCTTGGTCGGCAGCGCGCACAACTTTATCTACGTTTTTGTAGGCCTGGGGCGCTTCTTCGGCTACCCCCCGCAAAGAAGGGCTGCGGACGATGACGCCGCGCCGCCTCAGTTGTTCGACGATCTCCTGCCCTGTCCAGGCTTTGAGAGCTTGGTTGCGACTCATCGCCCTTCCGGCGCCGTGGCAGGCCGAGGAGAGGGAAAGGGCCTCACTTTGCTCCGTGCCGACCAGAATGTAGGAGGCCGTGCCCATGGAGCCGCCGATGATGACCGGCTGACCGATAGAGCGGAAAGCCTGAGGGATCTCTGGGTGGCCAGGCCCAAAAGCGCGCGTTGCCCCCTTGCGGTGGACGAACAGGCGACGTTTTTTCCCCTCTATCACGTGCGTCTCCTCCTTACAGGTGTTGTGGGAGACGTCGTAGATAAGGTCGAGTTCAGCC # Questionable array : NO Score: 3.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:-0.29, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000009.1 Synechococcus sp. 65AY6A5 scaffold00443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2 36 100.0 34 .................................... ACGATAAGCCGCCTCCCAGACGGCGCGCCAGGAT 72 36 100.0 39 .................................... AGTTTACTTCCCGCTGGTCCCAGTCGCCTAGAGTAGTGT 147 36 100.0 38 .................................... CCCTTAGGCACACTCTTGGGTTACTCAAGCGCGGGGAG 221 36 100.0 39 .................................... GATCGGCCAATTTGTTAACCAATAAGTAAACTAGCTCTT 296 36 100.0 36 .................................... GCTCCCGCAGTGATTTACCCACATTGTACACTTGAC 368 36 100.0 38 .................................... ATCCAGGCCCTTTCGGTTAGTAGCCAGCGATTACAGAA 442 36 100.0 41 .................................... GATCTAGAAGTTTGTCCACCTCACTCCAGAAGCGCTGCTGA 519 36 100.0 38 .................................... ACTGGGGCAGGAATTGGGAGTGGTCGAGTTTCCTCGTC 593 36 100.0 40 .................................... AAAAGCACCCAGGTGCCTAGGGAAACTAGGATACTGGGTG 669 36 100.0 40 .................................... TTCCGTAACCTGCCAGTCCATGTGGTCAATTAACCATTTA 745 36 100.0 41 .................................... GGCTTCGGTAAAAGGGCAGGCTTCGGTTGCTCTGGTGCTGG 822 36 100.0 43 .................................... ACGGACGTAAACACTCAGGTTATCGGACTGGAAGCTCACATTG 901 36 100.0 40 .................................... GGAATTGTGGTTTCAGCACGTGGAGCCGGTTCTGTAGGTT 977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 14 36 100.0 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : AG # Right flank : ATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 404187-404743 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000001.1 Synechococcus sp. 65AY6A5 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 404187 36 100.0 37 .................................... ACCCGGCTGGTCCGGGGCTGATCTCAGTCTCGTTCTA 404260 36 100.0 41 .................................... TCCCTCAAACTTGGCACAGCGAGAGGAATAGTATGAACTGA 404337 36 100.0 39 .................................... CCTAAGGAGGATAGTTATGTCTACTACTGTGTTTGCATA 404412 36 100.0 39 .................................... ATTGCGGAGAATTTCCTCTTTGGTAAACATAACAAACCT 404487 36 100.0 38 .................................... CACGGATGACCCCACCATCCAGTGTGAAGTAGAAGGCG 404561 36 100.0 37 .................................... CATGTTCCTCCTTTCCCCAGCAGGGGGCACTGGTCAA 404634 36 97.2 38 ..............A..................... AAAAGAAAACCTGCTACCCAGTGAGTAGCGGGTTAGTG 404708 35 75.0 0 .C..T......-A...A...T.C...........GG | A [404738] ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 96.5 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGGCTAAGGAACTCCGAGTAGATCTCGGTATAGGCCTTGACCCACTCGGGATCGGGCTGGATGAGGCGTTCCACCTGCACCAGCCGATCGGCAGCCTGCTGCACCGAGCAGCACCAATAGGCCGAGGCGGCCAGGACAGCTGCCCCTACGGCGGCCTCGGGGTGCTTGACCACTGCTAAGGGGCGGGCAAGGAGGCTGGCGCGCAGGCGCAGCCACAGAGGGCTTTTGCAGCCGCCGCCGGTGGTCAACAGCGTTCCCTCTATGGGGATCCCGTGGGCGGCCAAGGTCTCCAGCCCCAGCCGCTCCACCATTGCCACCCCTTCCAAGAGAGCTGCATAGAAGCGAGGGGATCCCACTTCCGCCTGGGGCAAGAAGCCGGCAAATTCACTATCCAGGATGGGAAAACGCTCGCCGGGTCGGCAGAGGGGATAGCTGACCAAGCCCGTGGGCAGATGGGCTTCCGCCTGCCGATCCAGGGCAGCAAAGTTGCCGCCGGGGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 506386-505896 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000001.1 Synechococcus sp. 65AY6A5 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 506385 36 100.0 36 .................................... CTCCGCGCTCTATGCGCAACCGAATCAGGCTGCGCA 506313 36 100.0 42 .................................... ATTGCCCATATTCAGTTTTTCGTTCATTGTTGTGCTCCTCAA 506235 36 100.0 43 .................................... TAGTCAGTACTCAAAGTTCCTCTACGTTCCTTTCCACTTTGGA 506156 36 100.0 40 .................................... GTCCGGAGACTGAGCAATCGGCCGAGCGTTCGGATAGTCA 506080 36 100.0 39 .................................... TACTGAGTATACAACTGAATATACAACTGAATATAAAGT 506005 36 100.0 38 .................................... TTCCCATTGCACTGAGCAGATTGGTTCTTGCAGTTCTT 505931 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 100.0 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CAATCAAGGCAGCCGCCCATTCCCCCTCCCCCTTGGCCTGGGCCACCGTCCCCAGCAGGTGCAGGGCATCGGGTTGATCGGGAAACTCCGCCAGAATTTGCGAGTAAATGGCTTCCGCTGTTCGCAAGTCGCCAGCCTGCTGGGCCTGGATCCCGGCCAGCAGCTTATCCTTGGGGGCGAGATCCGACATTGAAACAAGGGAAGCTGGAGAGTTTTCCTCACTATAGGCCCTCCAGCTCCGATTAGAACCCCCCTCGCCGCCTTCCTCTCCCTAGGTCTCATGTTGCCAAAAGCACATAAAAACGGTATCAACGCTTCTGCGATCGCCTCGCCAAAACCCGCAAAAGCCGATTTTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTGCAAGGCCTTTTTTTGCCCTCTTCGACCGACCCCCTCGCAAATAGGTCTTGCATTCCTTGCCCCGCTTGGGTTTAATAGGGGTAGA # Right flank : TTTTGTGTTCCCTGCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 1120187-1119409 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000001.1 Synechococcus sp. 65AY6A5 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1120186 36 100.0 36 .................................... ATAAAAGACACCCAGGAAACAATCCTGGGTGCTTGG 1120114 36 100.0 44 .................................... TCACAAAACTTGGCAAGAACCCACTCAGGAATTTTCTCTACGAT 1120034 36 100.0 36 .................................... GTATACGATACACTTAGTTGTACACTAGGTACTCAT 1119962 36 100.0 40 .................................... CCCAGTAGCTCTACGACTGTCTCCAGATCGTAGAAGATAA 1119886 36 100.0 41 .................................... CCAGATCGGGCCAGAAGATGGGATCCACTCGATGACGCCGT 1119809 36 100.0 36 .................................... GACAGGAACCAGGAAATATAACAGATCCTTCGGATT 1119737 36 100.0 41 .................................... ACTCGGGAGGGCAGTTAACGATGGGGATCTCAATGGGGGAG 1119660 36 91.7 19 ..............................A...GG ACACCGAAAGGGGTCCATT A [1119630] Deletion [1119606] 1119604 36 100.0 39 .................................... TAGTATTCATACCACTCATCAGGGTGGTGAAAGACAATC 1119529 36 97.2 50 .....T.............................. GCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGTCACGCGTCCTCAA 1119443 35 77.8 0 ...........C..............T.G-..TGTA | ========== ====== ====== ====== ==================================== ================================================== ================== 11 36 97.0 38 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : GGTTGGCCAAGTAAGCGGCTCCCCCTTCCTTGGGGGGAAACTAGCAGCGGGGATCCCCAGGTGTTGAACATGCGCTTTGCGTTTTGCCGATACCGGCGGCCTTTCCGCCAGCCCTTGCGCACGCGCTACGGCCTGTGGTCTATCCGCGAAGGGATCCTGGTTCGGCTGACGGACGCGGAGACGGGAGGTCAGGGCTATGGGGAGATTGCCCCCATCCCCTGGTTGGGCAGCGAGACCGTAGAGGAAGCGCTGGCATTTTGTCAGCAGTTGCCCCCTGAGCTGTCGGAAGCAGAGATCGAGAAGATCCCGGCAACCTTGCCCGCCACGCGCTTTGGGCTGGAATGCGCCTGGCTGGCCTGTCGGGATCCCGGCTGGCTGGCAAGGGATCTCTCCGGGCTTTCCTGGTGTGGGCTTTTTGGGAAAACCCCACCCTCAGGTTCCTACCCCGCCTACAAGGTCAAGGTGGGGGTGGAGCCTCTCGAGCAGGAGGTGAAAAAGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1240262-1239917 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000001.1 Synechococcus sp. 65AY6A5 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1240261 37 100.0 39 ..................................... TGCCGATAAATCCGACGCCATGTCCATTTGGATGGCGTC 1240185 37 100.0 36 ..................................... TTCTGACCACTTCATCGAGGCCCACCCAGATTGGGT 1240112 37 100.0 39 ..................................... ATTACTTGAGTTACTGACAGTAGAACACGAGTTGAGAGA 1240036 37 100.0 46 ..................................... GCTGCGTTGCGGCGGCAGCTCAAAGAATTTGGGGTGAAGCCCACTG 1239953 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================== ================== 5 37 99.5 40 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Left flank : TGACGGCCTCAGCCTGGCCGAAGAGCCCTTCGACCGCAAGCCGCTAGAGGTCTCCCAAGATCTGGCCGCCCTGATGCAGCCGCCGGTTCCGCCCAACGAGCTGAGCCTGCCGGAGCTGGCGGAGCGCATCTCCCGCCTGGCCCGCTCCAACCTCAATACCCAGCCCCTGCGCACCGAGTTCCACATGCGCTTTTCCCTGCCCTTGGCCAGCTTTTTTGCCGTCTTGATCTCCCTTCCCCTGGGATCCACCACTGCGCGGCGGGTGGGCCGCTATGGGGGTGTCGTCTTCGGGATCCTGTTGGTGTTTGCCTACTACGTGGTGCTGAGTGTGTCTCGCAGCCTGGGCGAAGCAGGAGCCCTTCCCCCCTGGGCGGCAGCCTGGAGCTTCAACATCCTCTTCGGCGGCCTCGGCCTGCTGCTGTTGGCCCGCTTCCTGCGCTAGGGATCCCTTCTGGGCAGAGCAACCCCCGACCTAACCAGGGATCCACCGGATCCCTATA # Right flank : CCTACCCCCGGAAAAGGCTGAATCCATAAGGTTTTCAAGGTGCGTTTGCGAGGGAGTACGGAGACTTCCCGAAACAGATATTAACACTGCTTCGCCGGATAAGCGCAAGTCGGGAAATTCGCTGTTTTGAGGGCATTATGTCACGTTTTTGGGTCAATTTGGGCAAGCAGTTCTAGATTCCTCTTAAAGCCTGGTGTTGCCAGGGGAAAGCTAACAACGGCTCGCCCCGACAGATTGCGCACAAAACTTTACAATTCCTGCCGCCCCCCGTCGGCCAGGGATCCCATCCCAGCGCTGGTCTGTCTAGACTGGAAGACAGCCCTATGGGGATCCCTATGCGCATTGGTGTGCCCAAAGAGATCAAGGAGCAGGAGTTTCGCGTTGGCCTGACGCCGGCGGCGGTGCGGGCTCTGACGGAGCAGGGGCACCAGGTGTGGGTGGAAACCCAAGCAGGCCAGGGGGCGGGATTTAGCGACGAGGACTACCAAAAAGCGGGGGCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 1640174-1640704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000001.1 Synechococcus sp. 65AY6A5 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1640174 29 100.0 33 ............................. ACAAATACAGCCAGCTGGTGCGTCATTTGCCGA 1640236 29 96.6 34 ............................A GGCGTTGCGCCAAGGTTCACCTATTCCCCGGAGA 1640299 29 100.0 34 ............................. GCCACCCGTCGCACCGCGTCGGCCAGGTTGGGCA 1640362 29 100.0 34 ............................. GTGGTGCTGGTGCGCCCCGCCGGCTCCAGTTTGG 1640425 29 96.6 34 ........A.................... CCAGTAAGAGATTCACGATGGAAGTGAACAACCC 1640488 29 100.0 34 ............................. CCGCCGGACGCGCCAGATGAGCCGCCAGCAGAGC 1640551 29 100.0 34 ............................. CGCTCAATCTGCTCACAAATCTCCAGTGCTGAGA 1640614 29 96.6 34 ............................A ATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTAC 1640677 28 82.8 0 ............T.T.....A..-.G... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.0 34 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : CGGTTCGAGCGGATATTAGTTTCTTGAAGGATCGCTTTCAAGCCCCCATCAAAGTCAGCCGTGAAAAAGGGTATCACTACACTGATCGGGAATGGCGCTTGCCGACGATACCCCTCACTAAGGGGGAGCTGTTTGCCCTGACTTTGGGAGCGAGAATGCTGGAAGCCTACGCCGGATCGGCCTATGCCCCGCAGTTGCGCTCGGCAATTGGGCGGTTGGCGCAACGGCTTCCAGAGCAGGAGTGGCTGGATCTCCAGCAGCTAGCCGATGAGCGGCTCATCTTTCGGGCAGGGGCAGAAACCCATCTGGATTGGGAGATTTGGCAGCGGTTGGAGGATGCCTGTCGGGAGAAAAGACGAGTGTGGATGCGCTATCGCACCGCCAGCCGAGGCGATCAAGTGTCGGAACGGGAGTTGGATCCCTATCTCTTGCACATCTACCGCGGCACCAATCCCTACGTGATTGGCTGGTGCCACAAAAGACAAGAAGTGCGCTGGTTC # Right flank : GGCTAGACAATTAAGACAATCTCACATCTACCGGGATCCCTTGCCTAGGTGGGCGACACTGGGGCTAGGTCGCAGAAGCGCGATATCTAAGGAGGGGAGTATGAGCAGGAGCTTGCTGGAGCAGTTGCGAGAGATGACGGTGGTGGTGGCCGACACGGGGGATATCAACGCCATCGAGACCTTTAAGCCGCAGGATGCCACCACCAATCCCTCTTTGATTACAGCAGCCGCCCAAATGCCCCAGTACCAGGGCATTGTCGATGAGACCTTGCTCAAGGCCCGCCAAGACCTGGGATCCAAAGCCGACACCAAAGCCGTGGTGGCCCACGCCATCGACCAACTGGCGGTGGCCTTTGGCGTGCGCATTTTGTCCATCATCCCCGGTCGGGTTTCGACGGAGGTGGACGCCCGGCTCTCCTACGACACAGCAGCCACCGTGGCCAAGGCCCGCCATCTCATCGAGCTCTACAAGGCGGCAGGGGCGGATCCCAAGCGGGTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1797073-1797255 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUW01000001.1 Synechococcus sp. 65AY6A5 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1797073 36 100.0 38 .................................... TCTGGTCGTACAGCCGCTGAATCGCACAGCACAGGCGG 1797147 36 100.0 37 .................................... CCTCCTGTTTCCCCCAGAACAACAAAATTGGGGGCAA 1797220 36 97.2 0 ...............................A.... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 99.1 38 GTCGCTTCCCTTCGGGGAAGTGGAATTAATGGAAAC # Left flank : CTGCCACAACATCAGACCCCGCCGTTAATAGCACAGAAGTCATCGCCGCCGTTAGGGGAGCAATCAAGGCATTCATTTGAATCCCAATCCCCGGCACCACCTGGACAGAATAATAACTAACTATTGTCACCACAGCCGTGACAAGCACAATCAAAATTGGCGAAACACAGGTAAACTGATAAATGGCCAATAGGGTTGGAATCAGACCACCCCCGACATTCAACGCCACAATCGTTTTCTGTTCAATTCGCCTTAAGGGAATACCCCAAAAGAAGCGCATCGTCCACAATCGATCCAAATCAGGTACCATAGCTACTTTGGAAACTCTCTCATAAAGGGGGATATTAATCGTACTCTCAATAATTACTAGGGTCAGCAGCACAAGAGATAGGTTAGGAGAAAATTCGAGCTTTGCAACAGCAACTTGAACCGCATCTAGGGTAACCACCAACCAGAGAAACGGGAAGGCTAAGAGCAGGAGTAAAAAGAGTAGATAGGCA # Right flank : CAAACAAACTATGGCAGCCAGGGAAACTGGCGAAAGTTAGGTGGGCGCTTTTCCAAAAAGGCGCGTTTGCCCTCAGCAGCTTCTTCGGTCATGTAGAACAGCAACGTCGCATCTCCGGCCAGCTCCTGCAGCCCCACCTGCCCATCGCAGTCGGCATTGAAGGCGGCTTTGAGGCAGCGGATGGCCAAGGGGCTGTGCTGGAGAATCTCTTGCGCCCAGCGGATCCCTTCAGCTTCCAGCTCTTCCACCGGCACCACGGCATTGACCAGACCCATCTCCAGGGCTTGGGCTGCGGTGTATTGGCGGCAGAGGAACCAAATCTCGCGGGCTTTTTTTTGCCCCACCACTCGCGCCAGGTAGGCGGCCCCAAAGCCCCCATCGAAGCTGCCCACCCTAGGGCCGGTTTGCCCAAAGATGGCATTATCGGCGGCAATGGTCAGGTCGCAGATGAGATGCAAAACATGGCCACCCCCAATGGCGTAGCCTGCCACTAGGGCAAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCCTTCGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //