Array 1 90953-92349 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJL01000004.1 Escherichia coli strain EC_24 NODE_4_length_207243_cov_15.539731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90953 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 91014 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 91075 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 91136 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91197 26 89.7 0 ..........................--- - Deletion [91220] 91223 29 65.5 32 CC.NNNNNNNN.................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91284 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 91345 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 91406 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 91467 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91528 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 91589 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 91650 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 91711 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 91772 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 91833 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 91894 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 91955 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 92016 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 92077 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 92138 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 92199 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 92260 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 92321 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 107851-108550 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJL01000004.1 Escherichia coli strain EC_24 NODE_4_length_207243_cov_15.539731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107851 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 107912 29 100.0 31 ............................. CCACCGTTTTCGCCACCAGGGCGCACAACCC 107972 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108033 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108094 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108155 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108216 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 108277 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 108338 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 108400 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108461 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 108522 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //