Array 1 251638-255416 **** Predicted by CRISPRDetect 2.4 *** >NC_015660.1 Parageobacillus thermoglucosidasius C56-YS93, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 251638 30 100.0 37 .............................. TACTTTGAGATGCCTTTTAGTGATCCAAAAACAAGGT 251705 30 100.0 37 .............................. GTTGTTCAATCTCCTGATATTTTTGCTCGAGTTCCGC 251772 30 100.0 39 .............................. TCGAAAGAACCTAAAAAGCGTAAAACGAACCATTACACC 251841 30 100.0 37 .............................. TGTTTCTTGTACCATTTCGCAAAAGCAACAGAATCCA 251908 30 100.0 38 .............................. GCTCTAGCGTTCCGGCTTTGTTGCGGCCGAGGACTAGT 251976 30 100.0 36 .............................. TTCTACATCGTCGGCTATGACTTGCGAATATTTTCG 252042 30 100.0 38 .............................. TCAAAAATTTTTGGAATCGAGCGAAGCGGGGAAACCGT 252110 30 100.0 39 .............................. TGGAAGGTAACGAGGTAAGGGATTGGCTTGGATTGTCAC 252179 30 100.0 37 .............................. AAATTAATCCCCGCGATAGTGATGCGGTCAATCTGTA 252246 30 100.0 37 .............................. CTGCAAAGCGAGCCGTCCGACTGTCGCAGGGCAAACC 252313 30 100.0 36 .............................. TTTTTTTTGAAAAAATCGCAAAAAATTTAAAAATAG 252379 30 100.0 37 .............................. TAACAAGCCGGAGGACCCGGAAAACGAACGCATAGCG 252446 30 100.0 38 .............................. CCTTCATTCGTTTTTACATGTAAAACGGCTTGTTTTGC 252514 30 100.0 36 .............................. ATACTAGACTTTCTTTGTATTGTGCGTATGGCTCGT 252580 30 100.0 35 .............................. AAAAATGCGGCCGATCAATTCATTGCTTCTCACTA 252645 30 100.0 36 .............................. TAATAATTGTAAAATCTACTTTAATACTGGTGCGCC 252711 30 100.0 39 .............................. TGTAACAGTAACGATTACACGGCAAACAAAAGCTGTATC 252780 30 100.0 35 .............................. TTGTATCGGTGTTTGATGGTGTGAAACCATCACTC 252845 30 100.0 36 .............................. ACAATAGAATTCGATGTACCGTTTGATGATGATATG 252911 30 100.0 38 .............................. CACGGGCGGTGACGTTGAAGCCGCGCTCCAAGAAATCG 252979 30 100.0 37 .............................. TCAACAAACGCTACTACATCAACATGACCATAACGCT 253046 30 100.0 36 .............................. ATCTTTTAGTTTTTGCATCGCCAACACGTGGCGTAA 253112 30 100.0 36 .............................. TTTCCGTAAAGACCCTAACAGCAATATTGGAAAACT 253178 30 100.0 39 .............................. ATCGACAAGCACCATCCCTACCTTTCAGATAACGAACAG 253247 30 100.0 37 .............................. GCCAAATTTTTTATCTATCCAAGAGTAGCACCTTTCC 253314 30 100.0 37 .............................. CGCAACAAAAAATAACCATCTTCAAGCGGCTGGCTCT 253381 30 100.0 38 .............................. ATGTTTTGTGCGTGTAAAAGATCGTCAATTGTAGAGAA 253449 30 100.0 38 .............................. TGATTCATCAGTAGACCTTGCAGCCATTGAAAATGAAG 253517 30 100.0 37 .............................. ACCTTATATATTCCATCAAGGCTTGCAGAAGCGTCTA 253584 30 100.0 38 .............................. ATTATTATCCAAATAGCATCATCATGCTATACACCGGA 253652 30 100.0 38 .............................. TTTTTGGGATCGCTCCCCTTATCGACAGCCGGAATATT 253720 30 100.0 40 .............................. CTGTTCCATCGCCGAATTTCACTTTTGTAAATTGCAATGC 253790 30 100.0 38 .............................. GTTGCTACAAGCTCAATGATCCAGCTTGGGCAATTGAT 253858 30 100.0 36 .............................. ATCGGATTGAACGATGGCGTGATTCACGTAAACCGT 253924 30 100.0 37 .............................. TAGCAATACGGACATTACGCCTGTTGTATCGACCGTC 253991 30 100.0 38 .............................. TCCGACGGATACGCAAAATTGTAAGGGATAAGCTCCGG 254059 30 100.0 36 .............................. ACCGCTTCATATACCGACGGAGGGTTTTCGAGGTGA 254125 30 100.0 35 .............................. TGACAATCCGTTAATTTTTGATATTTGTCATGCAT 254190 30 100.0 35 .............................. AAGCCTTTTTCTGCGAAAACCACGCGATAGGCTTT 254255 30 100.0 36 .............................. TCCGGTCGCTGTTTTCAATTCGATGGTGTATTTTGT 254321 30 100.0 35 .............................. TTGGAGGAATATGCTGCATTGACATCATCGGCCAA 254386 30 100.0 37 .............................. TTCTGACTTTCAAGAAGTTGAAGCGTCTTTTGTGTCG 254453 30 100.0 36 .............................. CCGCTGCGGCATTGTATGGGCATTACAACGGTGTAG 254519 30 100.0 36 .............................. AATCGCTTGAGCGTATACCGCCAAACTCGAACCACA 254585 30 100.0 36 .............................. TTTGCAATCGCTGCACGTTCTTCTAACGATAAGTAA 254651 30 100.0 38 .............................. TCGACATCAGGAATTTCGTCGATAAATACTTTGAATAT 254719 30 100.0 35 .............................. GTAATTCATAATCGTTCCCCATCAACTCTGTAAGA 254784 30 100.0 35 .............................. TGAGAACATAAGCGAATTTTCCATTCGAGAATATT 254849 30 100.0 39 .............................. AACAAGCGCAAAGGTTGAACATTTTCCTTTTTCAAGCGT 254918 30 100.0 36 .............................. GCATTTGATCACGGCGACATTGAAAACGCACAAATT 254984 30 100.0 38 .............................. TCTGAAGGAGAGTATGCCGATTATCGCGTAGAAGAAAT 255052 30 100.0 36 .............................. ACGCTAAATAGAATCAATCGGCCATAACGACCGCAA 255118 30 96.7 39 .............................T AACCAATCGGCTGGTGGCTTCTCACCCGGCCCCCATCCA 255187 30 96.7 35 .............................T TCCGTTGTCAGGTGATAGTTGAATTTGGTATTGTA 255252 30 100.0 40 .............................. ATGACTAACGAATCATAAATATCGCTAAACATGTAGTCAG 255322 30 96.7 35 ...................A.......... CCTACCTCGGTCGGACTTTCCGGTTTTACTCGAAT 255387 30 90.0 0 .........C..........A.G....... | ========== ====== ====== ====== ============================== ======================================== ================== 57 30 99.7 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCCGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCCTTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGAGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCTTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAAACTTTGTCTATCCGCTTTTTTCTGCCACATTTAATGGGTTTAAAAAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCCCCCATGATTCAACACGATCCGGAAAATTCCGCTATATTCTCCGGTAATCTTAACATCGCTGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTATTCCGTCTTATATAGCCCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1497698-1499753 **** Predicted by CRISPRDetect 2.4 *** >NC_015660.1 Parageobacillus thermoglucosidasius C56-YS93, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1497698 29 100.0 36 ............................. GCCTAGCACACGCCGCACCCGTGCCAAAAGTTTTCT 1497763 29 100.0 36 ............................. GTTGAAGGGATTAAAATGTCCGTCTTTGTCGCGCAA 1497828 29 100.0 35 ............................. GCGCCAACAGGCTCGCTATAAACTTACCTTTATTG 1497892 29 100.0 36 ............................. ACGTTTGCGCATCGCAAAAGAACTCGGCATGACGGA 1497957 29 100.0 36 ............................. TTGGGTCATCGGATTCATCTTCGGATTGGGAGTTCG 1498022 29 100.0 35 ............................. ACGAAGTTGATTGACTTCTTCATTGGTCCAGATGA 1498086 29 100.0 36 ............................. AGTTAACGAAGGCTGACTTGCAGGTTGTTAATCAGT 1498151 29 100.0 37 ............................. GAGGTGAATATACCACTTCCGATATTGATTTGATTTT 1498217 29 100.0 39 ............................. CCTTTATGTTCTGCATGTTCTCCCTAAACGTCAGCGTAA 1498285 29 100.0 37 ............................. ATGACTGCTGTTGATTGGAAAGCAGGCATTCCAAATG 1498351 29 100.0 35 ............................. TTTACACCTCCTATTGTTCTATTGTTCGGCTCGGA 1498415 29 100.0 35 ............................. AAAGAAGCTTTGCAAGAATATATTGGAAAAATGGA 1498479 29 100.0 39 ............................. AGGCTTTTTCTCTAGCAGCTGCAACTTGCTCTTCTGGAA 1498547 29 100.0 39 ............................. TTAAAGATGACTACATGAAAATTTCAAAAGAGCGTTTTG 1498615 29 100.0 36 ............................. TATGATCCTCCCTTTTCTGTACAATACCTTAAACTT 1498680 29 100.0 35 ............................. AAAGCGGATGCGTTTTATTGTGTTACATTTCCCGC 1498744 29 100.0 35 ............................. ATGATAGCAACAGTTTTTCCGGAAAGAATATCTAG 1498808 29 100.0 36 ............................. GTTTCCGGATCCATATCTGGCACCCGTTTAATGATA 1498873 29 100.0 37 ............................. ATGATCCCGATTGCTTTTTATCCTCGCTATCGATATC 1498939 29 100.0 38 ............................. TCGTAAACTTCAATGACGTTAATTGATTTGTATTGACC 1499006 29 100.0 36 ............................. CTCCAAGTGAAGGGGGTGGATATTGATGCTTGATCG 1499071 29 100.0 35 ............................. ATTCAAGCATAGCTACTTCGTCTGCACCGTTTTCA 1499135 29 100.0 35 ............................. ACGATAAACGCACACAACGCCGACATCGTAACGCC 1499199 29 100.0 35 ............................. ACAAATGATGGTTTGATGCCCAAAGACGCTTTAGC 1499263 29 100.0 37 ............................. CTGGTATGCTTGCCGAGCGAAGCGAGGGGAGCGGCAG 1499329 29 100.0 39 ............................. AAAGCACAAGCATTCAATCAGAGTTGACGGCTGTCAATC 1499397 29 100.0 35 ............................. TAGTTAAATTACCTTTGTGCCAAATATCGTTTCCA 1499461 29 100.0 36 ............................. GGGATTAAACATCTACAACAGTAACAGGGATATCAA 1499526 29 100.0 38 ............................. TCATGATTTTCATCATAGATAATAGCTAGAATTTCTTC 1499593 29 100.0 37 ............................. TGTCTACTATGGGAAAAGTAGATTTGATGCATTGCGG 1499659 29 100.0 37 ............................. GAATAATCTATCACTTTTTCTTTCACATATACCCGTC 1499725 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ======================================= ================== 32 29 99.9 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : ATACAAACCGTTGAAAGCGTGGTGGTAGAATGTATGTCATTATCACATACGATGTGGGAGAAAAACGAGTAAATAAAGTATGTAAGAAACTTAAGGAATATTTAACATGGACGCAGAACAGCGTCTTTGAAGGAGAAATATCAAAAAGTTTATTAATGAAATGCATGCATGAACTTGAATTCATTATAAATAAACAAGAAGATTCGATTTATCTTTATCAAGTGTCCAACCCAAAAAATATAAAAAAGCAAATTTTGGGGCAGGAACGGAATTTTGATGATCTATTTATTTAACAGTGTAAAGCAGTTAACATGTTGCAGTAAACCTCGGTTTTATCTCAATATTGAAAAATGCTTGATATATCAAATAAAAACCACTTAATTTTTTAACTAAAGTAAAAACACAATTGCCGCTTTACTGCAAAAACCTATATATTGATGTAATCAAGGTTTGAAGAAAAACATTGATACATCAATATTTTGCCGTTGTTTGAAAATAGG # Right flank : GTTATCTTTCAGAACAACAAAAAAGAGCATTCCTGTTAGAAGTTTTTGGGGATTTGAATAAAAAAAGCACTCTTGGTATGATTCGGTGGTGTTATTGGAAAGTTGGGGCCTAATTGGGTACCAAGGTATGCATGAATTCTATCTCAAACAAGAAGATGAATCAAGTCACCGATCAAGCGGTAGTTGTTGTGCCATGGATATCAACGCAAAAAAAATCATTTTGCATTTGTCAAGCAAGGATACTCATTTTCCGGCGTACCGAAGAAAACAGATGAAACGTCAGCGTTCCAGTTTATCAACGTATAGCAAATGGAGAATCGAATGGCGCAAAGCTCGCCCTAACCGTACTTTAATCGTTATTTCGCACCGAATTGCATCACTTGATTGGTTAGAGCGCTACCTAGTGATAGAACATGGAAAAATTGTCGAGACAACTAGCTATGAGGAGATGATAAATAAAATCGAGAAGGCTGAACGGGCAGGGGAGAAAGGAGAGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1972899-1972138 **** Predicted by CRISPRDetect 2.4 *** >NC_015660.1 Parageobacillus thermoglucosidasius C56-YS93, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1972898 30 100.0 37 .............................. TGTTTTTTCGGATGAGGATTTTATTAGGTTGTTAGAA 1972831 30 100.0 37 .............................. CCTGTTGAACAAAAGCGAAAACTGATTAGCCGTTCAA 1972764 30 100.0 35 .............................. ATAAGCCCCCGACTGCTAAAATAACACTTCTTTTC 1972699 30 100.0 38 .............................. CTTGATTATAGTGATTAATAAGCACGCGGGGGGTGAGT 1972631 30 100.0 35 .............................. GATAACAATATATATCACCTCTTTTAAACAATCCC 1972566 30 100.0 35 .............................. AGTATAACACGGGAGGGGTCCGGTTGAAATATAAA 1972501 30 100.0 36 .............................. TCTCACTCGTTGCTATGAAAAAGAAATGCGGATTCC 1972435 30 100.0 37 .............................. GGCGGTTTCTCCGGTGCCATGAAACGCGCAGCCGTCC 1972368 30 100.0 36 .............................. CATGGATGTGGTCGCAGAAAAGCTCTATGACATTGA 1972302 30 100.0 38 .............................. AACTTGGCATATGCATAAAATCCGATGAGTTTCCCACG 1972234 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 1972167 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.7 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAAGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTATCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGGG # Right flank : TATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCCAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACGGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1995185-1992400 **** Predicted by CRISPRDetect 2.4 *** >NC_015660.1 Parageobacillus thermoglucosidasius C56-YS93, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1995184 30 100.0 34 .............................. ATATAGTATTCAAAAGAGGAAAGGAAGTGAATAC 1995120 30 96.7 36 A............................. AAATTCCCGACTGGGTCCCGGGGGTAGGCGGAAAAG 1995054 30 100.0 34 .............................. CCATCAACACTCACTAGCCGCCAATCAGTATATG 1994990 30 100.0 37 .............................. ATCTTTGTATAGGTGCTTCCATCGATTCTTCCCCTCA 1994923 30 96.7 37 C............................. TTCTTCTTGCATTTCGACCTGTTTTTTCACCGCGACC 1994856 30 100.0 37 .............................. TAGGAGGTTAGAAATCTATGAGCCAAAACAAAGTTAC 1994789 30 96.7 35 A............................. CAAAGTATACACGGACATTGAACAGGTGACAGCGG 1994724 30 96.7 34 A............................. AATCATGAGCGTACCGCGAATATCTACTTTTTCG 1994660 30 96.7 36 A............................. TCCAAACAATTGCTTGGCTCTATCCGTCATTTCGTT 1994594 30 100.0 35 .............................. TATTTTCGCGCGTAACTTGTTAGGCGGCGTTGCGG 1994529 30 96.7 37 A............................. CCCGTAATATGATCAATATCCAGCCATTCCGGAGCAT 1994462 30 96.7 37 C............................. TTGACCCCAATCTTGACACCCGTCTCGGGATGTTCAT 1994395 30 96.7 34 A............................. GCCAAACCAATATCTTTATCCGAATCTTGCAGAA 1994331 30 96.7 37 A............................. ATAAGCACGCGGGGGGTGAGTATAGTTGGATGAGATA 1994264 30 96.7 37 T............................. AACACTACACGCAAACCGAGCAAATCCGGGCTCCGCA 1994197 30 96.7 35 A............................. TTCGGATTCAAATCCACCTTCATATCGAACCTTTC 1994132 30 100.0 35 .............................. CGGGATAAGGAGAAGGAGAAGAACAGGGAAGACGT 1994067 30 100.0 37 .............................. TTTGCAGTCGCGACATATAGCGCGCGGCGTCGCGACT 1994000 30 100.0 35 .............................. AGGTGCATGGGATGAGAAAACAAAGTTCATTACGC 1993935 30 96.7 35 T............................. CAGATGGCATGACTACTTTAATAGCGAAGATATAA 1993870 30 100.0 34 .............................. ATACATGAAGGTACCGAAACTTATTCCGGCTGAA 1993806 30 96.7 35 C............................. TGAAAGTTTCAGAGGTTCGTAGATTTTGCCAAAAA 1993741 30 100.0 36 .............................. CAACCGGTAACCCGAACAGTTGACGACCGGATGGCG 1993675 30 100.0 37 .............................. CCGATCACATACGAACCAAGCGCCGAGATCGTCATAC 1993608 30 100.0 35 .............................. ATAAAATCGGTTCAAGTTCTTTAGCTTCCCTATAC 1993543 30 96.7 36 C............................. ACTTTCGTACACGAAGACAAAACGTTCGATGGCAAG 1993477 30 96.7 35 A............................. ACGCCCTCCATTCGTTCACAATCTCGTCTTGCCAT 1993412 30 96.7 35 T............................. ATCATTCGCTCACCTCTAATAGCTCGGGGTTTTCG 1993347 30 96.7 36 T............................. CCTCACCTCTCCGGGATATTTATTCTCCGAAGATAT 1993281 30 100.0 35 .............................. TTCGCTCCGCCAATCCACAACGTTCGCCCCGAAAG 1993216 30 100.0 35 .............................. CTCGACGTTCTCAATCAGTTTTACGTCGAAACCGC 1993151 30 96.7 35 A............................. ATCATTAGCGACGACAAATCACCGTTTGGTTTCGC 1993086 30 100.0 37 .............................. ATGGAAGACGCGGCGCAAAATCGGGTGGTTTTCGAAC 1993019 30 100.0 37 .............................. TCGAAATGGCCAAGCGCGATGTAACGCACTTACAAAG 1992952 30 96.7 35 A............................. ATCGTAAACACAAATTCGATTTTGTCGTTCGTTTC 1992887 30 100.0 35 .............................. AACTATCAGGTTCAGCTCATAATAATAGCGGTTTT 1992822 30 96.7 35 T............................. ACGAAAAACACCGACTCGCTCACGTTCACGAAGGT 1992757 30 96.7 36 A............................. CATTAGTAAAACCAAATAAAGAAAAACAGACGTTTC 1992691 30 100.0 34 .............................. CGAGGGAAGTAGAGTTTTTTGACCCATACGACGC 1992627 30 96.7 34 A............................. TTTAAATACTCTACCCCTATTCCTTTTCCCATCT 1992563 30 96.7 38 T............................. GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTAGGA 1992495 29 86.7 36 .T..................A....-...G TATTTCCGGCGTGGAGATGGGATGATATGGGATTCG 1992430 30 86.7 0 .T..................A....A..G. | A [1992418] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 97.6 36 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : TATGTCTTTATAAAAATATGATAAAAAATCGTTAAAAGGTTACATAATGATGTGATGTAAAAATCATGAGTATTGTAAACACTTCACATATGAAATGGTGACAGCAGGAACGGTAAAACAATAAAACAGATAGCAATAAATGAGCCAGAATAATGACTAACGATAACATGCCTAGAAACAGCTTATTGCCAGCACTCAGCCGCTTTTTATGAGGATATAGAGGGAACACAGGAGGTGTCTGCAGCCGGTCTTTTCTTTTCTAATGAATACTCAGTGGTTAAAAATTTTGAATCAACAATAGATGTTTGAATTCATTATAGCAACATATATTTTTGTCGTCGATCCTTAATAGCGCACAAACTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCTACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGG # Right flank : ACTGACAATCTATATCCAAAAGAGCTAACACTGATAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTGTACTTGGAGGGAATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAGAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTTTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATTGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATGTTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGTCCTGTCAACATTCAATTAAATATTGATGGGGAGAAGCTAGT # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3464596-3459791 **** Predicted by CRISPRDetect 2.4 *** >NC_015660.1 Parageobacillus thermoglucosidasius C56-YS93, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================= ================== 3464595 30 100.0 36 .............................. TTGAAAGCGTGATGTGGTTCGGGGGTCCCGTCGCGC 3464529 30 100.0 36 .............................. ACCGAGAACCTATTCATTGACAATCCAAGCGATGCG 3464463 30 100.0 36 .............................. GTGTATTTTCCAAAATAAATCGATGATTCTGAACAT 3464397 30 100.0 36 .............................. CTCACTTGATAAAGCCCTTCGTAACCTTCAATATCT 3464331 30 100.0 37 .............................. GAAGTCGATGCACAAGGAAAACGGTATGGTGTGATCG 3464264 30 100.0 37 .............................. TTTTTTGGCCAAGATTTTCTGCAAGAAAACGGGATAG 3464197 30 100.0 38 .............................. TATAACTTATAATACTCGTGAAAAAGGGGTGAAATATA 3464129 30 100.0 38 .............................. TTTAAAATTCCAATTTTATTTTGAACATCCGCAATAGC 3464061 30 100.0 36 .............................. ATAACAAAAGTAGCGGCTGTTCTCATTCAAAACTTG 3463995 30 100.0 38 .............................. TTGAAGATCAAATGGCGTTCCGCGGCAAAGGGCGTTTC 3463927 30 100.0 37 .............................. AAAAAGCAGCTGAAAAAATGTCAGATGCACTTGTCCC 3463860 30 100.0 42 .............................. AAAATCTGCGTGCAGTATCCGGCGGCGAATTGACCATTCCAG 3463788 30 100.0 35 .............................. CGCTTGAATTCATCAAAAAGCCCAGCAAAGCTATA 3463723 30 100.0 36 .............................. TCAAGACTCTTCTCACAATATTTTTCGTTTCACCAT 3463657 30 100.0 36 .............................. TCCTTTTCCTATACACTTCACACGCTCCCAGACGCT 3463591 30 100.0 38 .............................. TTTAGATTAATCTTTATATACAACACAAGCATGAAAAC 3463523 30 100.0 36 .............................. ACGACACGTACAACGACAAGTGGGGAAAAACAAAAA 3463457 30 100.0 38 .............................. ATTCCCGTTTCTCTTTTGATTTCTTTCTTTGGATAAAC 3463389 30 100.0 36 .............................. TGCGTTTTCCAAGGTCTTTCTCTTCCCGATACAGGG 3463323 30 100.0 37 .............................. TGCTTTTTCTTTTTTCACGTAATTTTGAACATCTGGA 3463256 30 100.0 37 .............................. AGGGAAGATCGAGGCTCGGCTGGGCGGCCGCGCGTGC 3463189 30 100.0 37 .............................. CTTCTTTGAATCCTGTGTAATCCGAATGAAAAACCCA 3463122 30 100.0 35 .............................. TCTTTCCAGAAATGCGGTCCGAATCGTTCTGCTCG 3463057 30 100.0 38 .............................. TCGAATTTATATCCGTACGGGGAATGCCCTCCAGGCTT 3462989 30 100.0 38 .............................. GGAAGTCATCTAGAACGCAAAATAAGGCAAATATGAGC 3462921 30 100.0 39 .............................. TAACTCCAATATTTGAAGCCACGCCAACAATTAGCTAGT 3462852 30 100.0 38 .............................. GGCGGTATGTGGGCGGCTGCGACAAAGGACTGGAAGCT 3462784 30 100.0 38 .............................. CAAGAGAAGTTTGAACGGGAGGGGATATGATGAATCTT 3462716 30 100.0 35 .............................. TCACAGTTTCAATATCGGGTTTAGCCCATAATGCC 3462651 30 100.0 37 .............................. TTGATCCCGTTTCGTTCTGCGATCGGTTGCCATTTTT 3462584 30 100.0 36 .............................. ATGACTTGTTTTTTTATTGTTTCAATCGCTCCCTCT 3462518 30 100.0 36 .............................. TTGGGAAAAAATCTTCCCGGAAACAACGATTCTTAC 3462452 30 100.0 37 .............................. AGGAAATATATAAACTCAATGCGATCGGGGAATTGAC 3462385 30 100.0 36 .............................. TGCTTAAAAGTAACATTGGGAGGTTGATCGATGAAT 3462319 30 100.0 35 .............................. GTGGAAAAATCGCGAATACGTTCAATTCGGAGACA 3462254 30 100.0 35 .............................. AGTGTCCCTCTTTTCGTATCAGAACCAACATACTG 3462189 30 100.0 36 .............................. AAGAGTCTGGAAGTCATTTTCCAAACTTTCGATTAG 3462123 30 100.0 37 .............................. TAAGCAGGAATTTAAAACAGATTTGATTGGCGACTTG 3462056 30 100.0 37 .............................. TCCAAACCGGCCAGCTCAAAATAATTGAATTTGTCAA 3461989 30 100.0 34 .............................. TTTATAATTGGAGAATAAAAACAAAAAGTAACCC 3461925 30 100.0 36 .............................. TTTATAATTGGAGAATAAAAAACAAAAAAGTAACCC 3461859 30 100.0 35 .............................. TTTGAAGCGTTCGACACACTTGTGAACACAACAGA 3461794 30 100.0 36 .............................. TTTTTTGCATTTGTAAAATGGGAAGTTTTGTTTGGG 3461728 30 100.0 39 .............................. GGGCGGATGCTCTCAATGAGGAGTTTCCTGCCCAACTCA 3461659 30 100.0 36 .............................. TTTGTGGCTCGCTGAAAGAATCGAAAACATACTAGA 3461593 30 100.0 39 .............................. TGGAAATGAACGAACTGACGGTAAATGACCTTGTGGAGT 3461524 30 100.0 39 .............................. TGGAAATGAACGAACTGACGGTAAATGACCTTGTGGAGT 3461455 30 100.0 38 .............................. GCGGACGTCAAGCGCGTCGATGAACCGAAAGCCGAGCC 3461387 30 100.0 36 .............................. CTGTTCCTAGTGGTGTTAATCGTGTAAAAATACTTT 3461321 30 100.0 37 .............................. CCGAAAAACATGCTTGGTAAATATGCTAACCGTAAAG 3461254 30 100.0 38 .............................. GCGAGTGTCGATTGCACTGCATTGATATCGACACTCTC 3461186 30 100.0 38 .............................. ACTCTACGCTGCCATTTCAGTTGATACACCATTTTCCC 3461118 30 100.0 39 .............................. ATCAAATCGGGCGGTGAACGTATGGCGACGATATTAAGC 3461049 30 100.0 36 .............................. TGCGATGCGGTTCCGACTCGGTTATGCGGTGACGAC 3460983 30 100.0 36 .............................. AAATCTCTCGACAACGGTTTGAATGGTCACAAGAAG 3460917 30 100.0 37 .............................. TTGCAAAACCAGTTGTCGAAAGAGTTACGGATTCACA 3460850 30 100.0 37 .............................. TTAAAAGACCGAGAAAGCTTTCTCGTCGAAAATCAAA 3460783 30 100.0 38 .............................. AATCTTTTTGCTACATTGGGATTCATTCAAAAAGTTCC 3460715 30 100.0 38 .............................. TAAAGAGCAATAAACGGACTGCTTGTGCCAGTATATCC 3460647 30 100.0 38 .............................. ATTGTTCAGGTGTCGGAATCCCATATACAAATAAATGC 3460579 30 100.0 37 .............................. ACGAAAAAAAAGATAACGTTAAACTTTTTCCGCTTGT 3460512 30 100.0 35 .............................. TTAGGTGAAGCTTCGCCAGTTGCTAAAGCGATGGG 3460447 30 100.0 38 .............................. TCGTATATTCGCATGAATCCATGTTCGCCGCGCCGACC 3460379 30 100.0 38 .............................. ATGAAATTGGTTCAATTTTGAAACTTGCAAAGCGTCCA 3460311 30 100.0 35 .............................. TCGGGATACGGAATCACAGATGCAATCCCGACCAG 3460246 30 100.0 37 .............................. ACTTCTCTTCGTGGCTCAAGCAATATGAAGCTAAAAG 3460179 30 100.0 36 .............................. AATTACGTCAGTTAATAACGTTTTGAACATGTAAGA 3460113 30 100.0 36 .............................. AATTACGTCAGTTAATAACGTTTTGAACATGTAAGA 3460047 30 100.0 35 .............................. AAACTTAATAATGCGCCCCTTTGGTTAGGCATTTT 3459982 30 100.0 38 .............................. CAATCAGAACGCCAGAAACTCGAAGGTGATACACATGG 3459914 30 100.0 65 .............................. GTGGTCTGCGACTTGACAGCTTTCGTGTCGCGTGCATGTTTATATCTTATGGACCGATTTTGCCT 3459819 29 76.7 0 ....T.......G......A..-...TCC. | ========== ====== ====== ====== ============================== ================================================================= ================== 72 30 99.7 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTGAATAGCGGCCATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGTCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : CTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCTCCACATTTGTTATAAAAGTGAAAAAGGGAAACAATAAAACAAACATGAAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTGCTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTATTGACACAGCTGAGATGTACGGAAATGGCGCTTCTGAACGCTTAGTCGGCGAAGCCATCAAAGGGCGCAGGGATGATGTGTTTTTAGTCTCTAAAGTATATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //