Array 1 39790-39396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLS010000030.1 Streptomonospora halotolerans strain NEAU-Jh2-17 Scaffold30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39789 28 100.0 33 ............................ TCGTTGCGGTGGTGCTGCGCACGGTGGGACGGC 39728 28 100.0 33 ............................ GTTCGGCGTTGAGGTCGGCCGCCAGCGCTTCGG 39667 28 100.0 33 ............................ ACACCAGGTCGCCGAGCCGGACATGCGGGCGTC 39606 28 100.0 33 ............................ GAACCGGTCGGGCCCGCTGGGGGTGGAGACGGT 39545 28 100.0 33 ............................ GCGGAGGCGACATCGCTATCGGCTGCCTCCACG 39484 28 100.0 33 ............................ GTGTTTTCGCCTGGTCGGCTCCCTGTTTTGGCA 39423 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 33 GTGCGCCCCGCGCATGCGGGGATGGTCC # Left flank : GGCGAGCTCGCGGGCGGCGCCGCGCACGCGCGGCGGGGAGACGGAGACCAGCAGGTCGTGCACGGTGGAGTCGGGCGCAAGGGGTGCGGTGACGCCGTCGGGGTCCTCCTCGTCCCCGGCGGCGGAACCGGAGTGGGACCCGATGAACTGCCGCATCACCCCGAGCCGCCCGCTGCGGGTGACGGCCCCCTCGGAGGGGTCGATGTCGCCGGCGACGATCCGCAGGAGCGTCGTCTTGCCACTGCCGTTGGCCCCGACGAGGACCGCCTTCATCCCGTCCCCGACACGGAAGGACACGTCGTCGAGCAGGAGGCGGCCATCGGGCAGGTGGTAGCCGACACCGGCGACGTCGATATGGCCCATGTGCCGCACTATGCCGAGGGGCGGGGAGGGCTGTCGACCGGTTTTCAACAAGGGTGGGACTAGGGTGGTGCCGTCTCGACACAATCCGGCAATATTGGAACGGTATTCGGCCGTTCCGTTGTGGCAGGTCAAAAAGT # Right flank : CTAACCCTTCCCTTCCGGTCTCCGCGCCATCACCGCTACCCCCAGTGCCGCCAGGGCCAGTCCTCCCCCGAGGTACATGGCTCCCGGCAGGCTGACCGTGTTCACCACGGCCCCGCCGACCAAAGCCCCTCCCCCGATGGCGGCGTTGAAGACGCCCACGAACAGCCCCGACGCCGCCTCCCGGTCCTTTCCGGCCGCTGCCGCGATCCAGGCCGTCGTGCTGACCGACACCCCGCCGTACGCCAGGCCCCACACCACCATCACCGCCGCCGCGCCGACGCCCGTCGCACCGAGGAACGGCACCAGCGGCATCACCGCCGCCAACCCCACTCCGATGACCGCCAGCGCCCGGCGCGGGTTCGGTCCGGCCAGCGCGCCCGCCGTGAAGTTGCCGACCACGCCCGCCACCCCGTACACCAGCAGCAGCGTGCCGATCAGGGCCGCGCCCGCGCCCAGGGTGTCCTCCAGGACCGGCCGGACGTAGGTGTAGGCGACGAAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34598-34447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLS010000012.1 Streptomonospora halotolerans strain NEAU-Jh2-17 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34597 29 100.0 32 ............................. CGCCCTCCGGCACCCGCCGGAGGGCGCTTTTT 34536 29 96.6 32 ............................C ACGGGATTGCCGTCGTGCGTGAACTTTTGCTC 34475 29 89.7 0 .........................GTT. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGTTCCCCGCAAGCGCGGGGATGGCCCG # Left flank : CAGCGCGGTGTTCAAGGACGGCAAGCGCCTGGTGCTGCTGGACCCGCGCGGCGGGGAACTGGCGAGCGGCGTGGTCGACCTCAAGCCCCACCGCCTGGCACAGGCGTTCCGCGCCCACGGCTACCCCTGGCGGGGCGACGGCGATCCCCACGCGGGGGATTTCCGCCGCTGGGTCCCGGGCCTGCCGGAACTACCGGCGGGCGCCCACGCCTTGCTCGCGGCGCGCGCCAAGGCCCTGGAGAAGGACCAGTCATCGGACGCGGAGGACCTGCGCGAAGAACTCAGCACCCTGGGCGTGGTCGTGCGCGACGACCGCAACCGCCAGTACTTCCGCCGCGTCCCCGACGCGAGTGAGGAGTAGGCCGGGCGGACGTCGTTGGCCCGAGGTACGGTGACGAGGACGGCGGAGAAGAGGACAGGATTTGGCCGCCAATGCCCCAAACTTCGACGGATTCAGTCTCAGATCGATAACGCCCCCGCATTCCCCCAGGTCCCGAAGG # Right flank : CCCCTGGATCCCGCACCGACCGCGCGGGGACTCGCTACGCGTCCAAGTACGTCAGCACTGCACGCACCCTGCGGTGACCCGAGTCTCCCGGGTCCAAGTCCAGCTTGGCGAAGATGTTGCCGATGTGCTTGTGCACCGCCCGCTCCGTTACCACCAGCTTTTCGGCGATCTCGGCGTTGCTCAGCCCCTGCGCCATATGTTCCAGGACCTCGCGCTCGCGGGCCGTCAGCCTTGTCAGGGGGCTGTCGCGCCGCACGAGCAGCTGTCCGATCACGTCCGGGTCGATCGCCGTGCCTCCGGCCGCCACCCGCTTCAGCGCGTCGATGAAGTCCCCGACCCGGCTCACCCGGTCCTTCAGCAGGTAGCCCACCCCGCCCCGGCCGTCCGACAGCAGTTCCCGCGCGTAGACCTGCTCCACGTACTGCGAGAACACCAGCACCGGCAGCCCCGGCACCAGCCGCCGGGCCGCCAGGGCCGCCTGCACGCCCTCGTCGCGGAAC # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67532-67933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLS010000004.1 Streptomonospora halotolerans strain NEAU-Jh2-17 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 67532 37 91.9 38 ..............CT.T................... GGCATATCCGATCAGCCCATCGAAAATCAGGATCAGAA 67607 37 91.9 37 ..............C.C...........A........ CCCGTGGGGGTGGCGGTGCTGGCCCTGGTCATGCAAG 67681 37 100.0 35 ..................................... CTCTATGCGGGGACGGCGCGGCACCGGCACCAGGG 67753 37 97.3 34 ..............................A...... GACCGGTAGTCCTCCAGGGTGCGCGGAACCATCT 67824 37 94.6 36 ..............C..T................... TCTGACGTTTCTCCACCAGGGCGCGCGGGAGTGGTG 67897 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 95.5 36 GTGGCGGCCGCCGTTCGCGGCGGCCGAGGATCGCAAC # Left flank : ACCCCGGCCACGATGCCACCCGGCTACGACATTCCCGTTCCTGCGTGCACCCCGCCCGCACGCAGGAAGCAGACGCCCGACACTCCACCGCTCGCACCAGCCCCAGGCAGAACCCACCCTGGCGAACGGGCCTTGAAACAGGCTGCCTGGAGTTGACGAACATGCGCGTGCTCGTCGCCGGCGGCATGCTGTCCGATGTCTTCGTTCCGATGCTCGACGACGACAACGGCGCCAACGACCCGGTCGAGGATTACCTCGTCGGGCTGCGACGGCTCGAGGACGCGGCGGCCGGCGTCGATGTCGTCATCCCCGGTCACGGGTCCGCCTGCGGGGCCGATCAGGTACGCGCACGGATCGAGCAGGACCGCGCGTACGTACACGCCCTGCGTGACGGCGGCGTTCCCGACGACCCCCGGATCGACTCGCCGGAGCCTGGCTGGGAATATGTGGCGGCCGAGGATCGCAGCACCCGGACGGGGTCGGGACCGGTCCCGCTGGAC # Right flank : CGGCGATGGAGTCCACCACGCCTGCGCGACTACACCCCGGAGTTCAATCGGTCAGCGTCCCTGCCATGGAGACCTTGCTGAACGCCTTGGGCGTGGGTGTGGAGAAGCAACCGCCCGAAACACCATGTACTTCGCAACCTTGCTGGCTATGCATCCTCATGTGCCACTAGATCAGAAGTACGTGTATCGCCACATGCTGGACCACGGCGGCCTAGTTTCGAGGTTCTTCTGCTGATTCGATTGAAGGTCGGCCTCAAGGTGAGCGTCCATGGTTCCTGGTCGCGCCGCGTACGGCGGCGCTGGTCAGGGAGGTGGGGTTATGCGGGCAACCACGGTGGCGCGGGGCCGGGCGGGGGCGGGGCCGTTGGGGCTGGTGCGGCCTGTTCCACGGGGTTCGACGGCGCCGGGGCGGCAGTTTGGTGGTCAGCGGGCCGCTGCCGGTCCATGGCTGCCTCCCCGGGGAGGCTGGGGCGGGACAGCGGTTCGGTGGGACGCGGCCA # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGCCGTTCGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-18.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24351-24129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLS010000072.1 Streptomonospora halotolerans strain NEAU-Jh2-17 Scaffold72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 24350 30 90.0 34 .....GG.....T................. CCGTGACCGCCGACAAGATCCGCGCAGGGTCGAT 24286 30 100.0 34 .............................. TGCTTGCGGTGGGTGAACAACTCCTGGGCCTCAT 24222 30 100.0 34 .............................. CGGGTGCGGTGCGCCCGCCCGGTTCCCCGCACCG 24158 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================== ================== 4 30 97.5 34 GTTGCAATCCCTCCAGGGATGATCAGCGAC # Left flank : CACTCCGCAGGAGCGCGCCGCCGCCGTCGCAGCAGCACTACGCGACGGAGCCACCAACGCCCAGATCGAGCAACGATACGGCCTGGGGCCGGTGGCCGTTGCCAACACGCTCAAACACCACGGGCACCCCACGCGCTGGCGACTGCGCAGCGCGGCCATCGCCGACCGCCTCCGGGCCGGCGACCCGGAGGAAGCCGTCGCGGCAGACTTCCCCGACGTCTCCCGCGTCCGCTTCCAACAGGCCCGCAACCGCGTCCGCGCAGAAGCCACCCAACTCCAGCAGCACAACATGGACGCCCGCAGCCCCGCCGCCCTCCGTCTTCACGCACAACCGCCATCGGAAACCTTCGAACAAGTCCAGGAGCCACTGTGGACCTGACGCAACTCCGGAGGCGTCTTGGATTTACCTCACCGCGCCTGACACGCCACCGACGTCCACATGGAGCGCCACGATGATCAAGGACACGGACGCGGGACCTGTAGCGGGCGACCGCTCTGCA # Right flank : CCGAGGGTAAAACCGCAGGTCAATAGACGCGTGGACAACTACGGAAAGCCTTCGATTGCAGCGTTCCGCCAGTAGTGCAGCAGTGCACGTCAGGCCCGGTTCTACGCAACTCATATCACCGGGCCTTCGTGGGCCAGCCTTTGGCCGATGGTTTGCGTCTGCACGTCATGAGGCCCCTGTATGCGGTAGATGATCACACTGTCATATGAGGTGTCGATGAGGTCTTTGATCGAGTGGGTGAGCGAACGGTGCTGTGCGGCGGACAGTTCGCCCTGGAAGACGCTGCGCTGCACCCAGTGCAGGTAACGGCGGCAGAGTTTGAGGATTCTCGGGTTGCGCTCGGCCAGCGTGTCGTAGACGACGATATGGCTCGTCGTTGCGGCTGAGCCGCCACAGGAGGTCCAGCAGCCGGTCGGGGGGCCTGGTCGGGGTCGAACAGGGTGCGGGCGGCGGCGGTGGCGCCGTCGAGGACGACCTCGCCGGAGGAGCCGGTGCGGTGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCTCCAGGGATGATCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //