Array 1 5148-6503 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAIQ01000018.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5148 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 5214 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 5280 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 5346 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 5412 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 5478 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 5544 36 97.2 30 ............C....................... CGACAACAAAGCCGTCTATGACCTGACCGA 5610 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 5676 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 5742 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 5808 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 5874 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 5940 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 6006 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 6072 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 6138 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 6204 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 6270 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 6336 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 6402 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 6468 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //