Array 1 55921-52764 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHW01000002.1 Moraxella catarrhalis strain COPD_M19 NODE_2_length_340344_cov_41.4001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 55920 28 100.0 32 ............................ TATCAGTGTTGATACTTCACATTTAGCTACTA 55860 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 55800 28 100.0 32 ............................ TGTAAATCAAGCTCAATTTCATGATTGCCTAA 55740 28 100.0 32 ............................ AGTCAGCACCGCTTTGATGATTGATAAGATAG 55680 28 100.0 32 ............................ TAGATCTGAGCCATTAAATTTCATAATGAGCT 55620 28 100.0 32 ............................ TTACTGTATTCACTCTTGGGTGCATTAGTTAT 55560 28 100.0 32 ............................ GTTCAACACCAACCGAGAAGCCTACAATGAAC 55500 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 55440 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 55380 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 55319 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 55258 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 55198 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 55138 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 55078 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 55018 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 54958 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 54898 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 54835 28 100.0 32 ............................ TCTTATCATTTTTATGATGCAGTGACACGCTT 54775 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 54714 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 54654 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 54594 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 54533 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 54473 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 54413 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 54353 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 54293 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 54233 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 54173 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 54113 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 54053 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 53993 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 53933 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 53873 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 53813 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 53753 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 53693 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 53632 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 53572 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 53511 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 53451 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 53391 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 53330 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 53270 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 53210 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 53150 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 53091 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 53031 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 52971 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 52911 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 52851 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 52791 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 53 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //