Array 1 1008528-1010080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014664.1 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1728 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1008528 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 1008589 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 1008650 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 1008711 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 1008772 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 1008833 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 1008894 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 1008955 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 1009016 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 1009077 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 1009138 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 1009199 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 1009260 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 1009321 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 1009382 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 1009443 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 1009504 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 1009565 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 1009626 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1009687 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 1009748 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 1009809 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1009870 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1009931 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1009992 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1010053 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //