Array 1 52353-56694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHM010000017.1 Clostridium perfringens strain 1805-88 NODE_17_length_59561_cov_128.117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 52353 29 100.0 37 ............................. TATTTATATTATGTACTAATTATATAATATCTATACA 52419 29 100.0 38 ............................. AGACATTTTTTACCTTCACTTAACTCTTTAGGTACTGG 52486 29 100.0 36 ............................. GTAGTACACATTTTTATTCCACCTTTTCATATATCT 52551 29 100.0 37 ............................. GTATGGTAGCAGCTACTTTAGATTTACCAGTTGATAA 52617 29 100.0 36 ............................. TTAAGAAGATAACTCATGCAGATACCAAGTTGGAAC 52682 29 100.0 36 ............................. GTACATGAAGGGGAGTTAGTAAGCTTCAACCCGCTA 52747 29 100.0 37 ............................. TTTCTGAGCAAAGCTTATCTAGCTCAGTCCCAAAAGT 52813 29 100.0 36 ............................. ATGAATATAAGAACAATAAAAACAACAACTATAAAA 52878 29 100.0 36 ............................. GTTATAAATACACATTTCATATCTCTTTGCACCCCT 52943 29 100.0 36 ............................. TAACTTCTATAAGTTTTAACTGTTCAAATAAATCAA 53008 29 100.0 37 ............................. CATGAATTAGCTAAAATTACAGTTAGAGATATAGCTA 53074 29 100.0 36 ............................. CAGTTTGGTAACCCTGATTATGACAGATTAGAGGTC 53139 29 100.0 36 ............................. AGCACAAGGCTTAGGAACTTATGAATCTTGCAGAGA 53204 29 100.0 36 ............................. ATTTTTAATAGTGGAGATTATAAAGGATGGGAATTG 53269 29 100.0 37 ............................. TTAAATTAAATATAAATTCAAAGGTAGTAACTATTGA 53335 29 100.0 36 ............................. TAAGGCTCTTAAAATTGCTTTTTTAAAGTTTTCATC 53400 29 100.0 36 ............................. TTACAGAAATAAAAGAAGAAGTTAAAAAAGAAGAAC 53465 29 100.0 37 ............................. TTGTTTAAATGCAAAACCATTGATGTGAATCCAATAA 53531 29 100.0 37 ............................. TTATTTATCTCACCTGCAATGCTTTGTCTTATATCTG 53597 29 100.0 37 ............................. CCAAAGCAAGTATTTCCATCATCACATAGCAGTAATA 53663 29 100.0 36 ............................. TTATTTTTACTCCTTATACCATTCTTCTTTAATTTT 53728 29 100.0 36 ............................. ATACATAGCTAAGAAAAAGGAAATGGTAGAACAAAA 53793 29 100.0 36 ............................. CATAGTTAATATATTAACTATATTATATTAGTCTAA 53858 29 100.0 37 ............................. TATATATTTAATAAATTTTGCTTAGATGCATTCTTTT 53924 29 100.0 36 ............................. TATCTATTAAACCGCTATTAATTCTATCAACATACC 53989 29 100.0 36 ............................. TTCTTCTTCTCTTCTTCTAACTAATCCTGGTAGAAC 54054 29 100.0 36 ............................. AGAACTGGATTAAATATAAGAGAGAGAGCATTTACA 54119 29 100.0 36 ............................. TTGCTTGTTGGATATTTGATTCTATCTAGTTGTCTA 54184 29 100.0 37 ............................. TTATGTTCTGAAATTATATTAGTAATTGGTAATTCAA 54250 29 100.0 36 ............................. TTAGTAAACTCATTCATATCACATCCACCACTTACA 54315 29 100.0 38 ............................. TTTGTTGCACTTTAATCAACTTAATTTCTAACTTATCC 54382 29 100.0 35 ............................. ATAAATAAATCAATCGTTTTTATTTGTGCAACCTC 54446 29 100.0 36 ............................. TACTATAGTAACTCTTTCATTGTTAAATACTTTTCC 54511 29 100.0 36 ............................. CAACATACACTAGGTATGTTATTTGAAGATAAAATT 54576 29 100.0 37 ............................. CTAAATATCTTCCATTCTTCTTCTCTTCTTCTAACTA 54642 29 100.0 36 ............................. TTTTAGTACCATCACTTTTAAAACAAGGACTAACAA 54707 29 100.0 36 ............................. TTCTTTAAAAAATGATATAAAAAAAGAACTTATTAA 54772 29 100.0 36 ............................. TGTAGTAAGTCATCTGTAAGAATAGTTTAATATTTA 54837 29 100.0 36 ............................. TTACACTATTAAATATTTTCTAAAATTCAACTAAGA 54902 29 100.0 36 ............................. AAACATTTTAATATTAAAGAAGTAATAGTATTTCCA 54967 29 100.0 37 ............................. CTTGGACTTAAAAGAATAGGTTGTCTATCTCCAAGTT 55033 29 100.0 36 ............................. GATGGATATGAATTAGTAGAACAATTTTATGATGAT 55098 29 100.0 36 ............................. TTACAGAAACCTCCTTTGGCTAGAAGCTAATTGGGA 55163 29 100.0 36 ............................. AATAAATCTTTTTTTAAATTTTCAGAAATAATTACT 55228 29 100.0 36 ............................. CCATAAGGTAAGGCACTTAATTATATCTCGCAAATA 55293 29 100.0 37 ............................. ATACTAGTAATATTAAGTATTACTCTAAAATAAATTC 55359 29 100.0 36 ............................. GGAATTAGTTAATTAATTTTTGAATGCAGCTACAAT 55424 29 100.0 36 ............................. AAACTAAAATTTCTTCTAAACGTAAAATATAATTTT 55489 29 100.0 37 ............................. ATAAACGATAAAAAAACATAATAAAAATAGTTAAAAA 55555 29 100.0 36 ............................. TTAACAATTTTAGGAACAGTAGAAGCAACAGAACTT 55620 29 100.0 36 ............................. AAGCAAAACATTAGTAAGAACCAAAACAAAAGGAAC 55685 29 100.0 37 ............................. TACCTTGACTTTGAGAATTAACAGGTTCTAAAACATT 55751 29 100.0 37 ............................. TTCTTCAGATTTGGCTGCTACTTCAGGATCATGAACT 55817 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 55882 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 55948 29 100.0 36 ............................. TATGGATTTATGACTGGAATGTTTGCATGGTTTTGT 56013 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 56078 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 56143 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 56208 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 56273 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 56337 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 56402 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 56467 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 56533 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 56599 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 56665 29 86.2 0 .................GAA....C.... | C [56692] ========== ====== ====== ====== ============================= ====================================== ================== 67 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 65330-67540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHM010000005.1 Clostridium perfringens strain 1805-88 NODE_5_length_129282_cov_119.099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 65330 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [65332,65342] 65398 36 100.0 30 .................................... CATGAACAACAGGTTAACAAATGAAAGTGG 65464 36 100.0 30 .................................... CTTAAAGATGTACCTGCTTGTGATGCTTTA 65530 36 100.0 30 .................................... CTATTTAAGAGGTGAAAGGTTAAAGAAAGG 65596 36 100.0 29 .................................... ATTATAGCTAACCAACCAGACATAGCTTC 65661 36 100.0 30 .................................... TATGTTTTTATATAATATAATAAATATGCT 65727 36 100.0 30 .................................... TGTAACACTAGTTGTATATGGTAGGTTTAT 65793 36 100.0 29 .................................... CTACTGAATTAGGAAAAGCAAAAGCTCAG 65858 36 100.0 30 .................................... CTAGAATTTTTACTAACGTATTAACTAATT 65924 36 100.0 30 .................................... TTTTTCTTTAGGCTTTTTATAATAAATTGT 65990 36 100.0 30 .................................... TAGATGTAATTAAACAAAACTTTGCCCATA 66056 36 100.0 30 .................................... AAGAGCTGTAATGCTGAAATATCGGTTACT 66122 36 100.0 30 .................................... TCCTCTGACCATTGATAAGTCATTTTTTTA 66188 36 100.0 30 .................................... AAAAGCGAATTAAATAACAGTGTTGAACTT 66254 36 100.0 30 .................................... TTAGGAAATGACATCATATAATATACTATA 66320 36 100.0 29 .................................... TGATTAGTTGTTATAATAGAAGTATAAGG 66385 36 100.0 30 .................................... GTATTAGGTTTTATATCTGCAACTTTTCTA 66451 36 100.0 30 .................................... ACTAGAGGGTTAGCCTTTACTACTTTTCTA 66517 36 100.0 30 .................................... TTCCTGTTTAGTTGCTATAATAGAAGTATA 66583 36 100.0 29 .................................... TTAACCCATTCTTTGAGTTTTTTAACATT 66648 36 100.0 30 .................................... CCACGCTCTATCATTGAAATAGTATCTTGA 66714 36 100.0 30 .................................... ATTTAAAAGTTAATGGTTTTAGATGGCATA 66780 36 100.0 30 .................................... GATTTCAATCACACTTGATGAAAATATTTA 66846 36 100.0 29 .................................... TATTTATTTTATTATCTTTTCCATTATTA 66911 36 100.0 30 .................................... TAGAGATATAGCTAATAAAAGAAGAAAAAA 66977 36 100.0 30 .................................... AAGTTTATAACATAGATATTAGGTCCGATA 67043 36 100.0 30 .................................... AAAGTGAGGTGAAAGTCCTCCCTTCATTTT 67109 36 100.0 30 .................................... TTGAAAGAGCTAGAGCCATGGCAAGCATAG 67175 36 100.0 30 .................................... ACAGGCCAGGTTCACAATGCCCGAAAATGC 67241 36 100.0 30 .................................... GAAACTTGAGCAACATTAGAGCTATTAGGA 67307 36 100.0 30 .................................... ATCTCTTTTTCCTATGTCATATACAGTACT 67373 36 100.0 30 .................................... CATTGCTGTAAGGTTGCCTTTGAGGGATAT 67439 36 100.0 30 .................................... GAGAACAACTCATGCTAGAATGTGGCATAA 67505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //