Array 1 30130-33205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEKI01000011.1 Nocardiopsis sp. RV163 contig11_size72974, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30130 29 100.0 32 ............................. ATCGCCTCACGCAGCCGACGGGCGCCGTTGTT 30191 29 100.0 32 ............................. GACTGGTCGCTGAATGTGAAGCAGCAGACCGA 30252 29 100.0 32 ............................. TCCACCGGGTTGTTCCTGGGGGCCGGGGCCCT 30313 29 100.0 32 ............................. CCAGTGACGGTGTCCTCGACGGTGAGCGCGGA 30374 29 96.6 32 ............................T GGCTGTCAGAAATCGTCGTCGGTATCGTTTAC 30435 29 96.6 32 ..................C.......... GGCCCATTCCACGACACCGCCGAGAATCGCGG 30496 29 100.0 32 ............................. GAGAACAGGTCTGGGCCCGATTCGCCGACCAG 30557 29 100.0 31 ............................. TGGGAGACCAAGAAGCCGGAACCCTCGCTGA 30617 29 100.0 32 ............................. CCGCCGACTTCGACCGCGCGAACCAGACCCTC 30678 29 100.0 32 ............................. TGGCGGGGCGAGCGCGCGCAGCTGCTCGGCCA 30739 29 100.0 31 ............................. GTGTGGGCGCAGACGTTCGCGGCGTTCGTGC 30799 29 100.0 32 ............................. CCCCGACGGGCCCCTGATCGGGGCGCGGTCAC 30860 29 100.0 32 ............................. ACCTGGCGATGCTCGCCGCGAATCAGCTGGTC 30921 29 100.0 32 ............................. CTGAATCGCTGCCCCCGCAGCCCAGCGGCCCC 30982 29 100.0 32 ............................. GCCAAGCCGTGGACGACCGACGGCGGCGAGGA 31043 29 100.0 32 ............................. GCACTCCTGGCCGCTGTGTTTACCGCGATCGG 31104 29 100.0 32 ............................. TTCCCAGTGGGAACCCGGGCACTGGGAACCTC 31165 29 100.0 32 ............................. GGGTAGGGGGGTCCGCATCACGGGGACGCCGC 31226 29 100.0 32 ............................. CGCGATTACCGGCCCCGCGGGTCCGCGTCGCT 31287 29 100.0 32 ............................. GCGGGCATGGGCGCACCCTTCGAAGGCGACTT 31348 29 100.0 32 ............................. TCCTCGCGCTGGCGGGGGATCTGGGGGAGGGG 31409 29 100.0 32 ............................. CTGTGACGACTCAGAAAGGTCCTGTCGACACT 31470 29 100.0 32 ............................. GGTCGCCACTGTTCTTCTTGCCGCCCCGGATA 31531 29 96.6 32 ............................A GGGGCCGCTGACTTTTCGTGCGTCGCAGCCGA 31592 29 100.0 32 ............................. GCCCCCAAGGACCGGCCGGACCGCAGGGCCCC 31653 29 100.0 32 ............................. GAGGTTGGCCATCGCCTCATACGTCCACTCGG 31714 29 100.0 32 ............................. GCGCCCGGCTGCACGACGTCCCCGTAGCTGTC 31775 29 100.0 32 ............................. TCGTAGGCCGTGGACGGGGGTTCGGCGTCGGC 31836 29 100.0 32 ............................. GCGGCTGGTCTTCGGAGAACCCGGGCCTGCCG 31897 29 100.0 32 ............................. TAGTAGTGCCCCTCGCCGGGGATCACCACTGC 31958 29 100.0 32 ............................. CCCGTCTCCCGTGGCGCTCTGGACAACCGGAC 32019 29 100.0 32 ............................. GAGGCGTGATGGGAGAGCGGACCATCGCCGAA 32080 29 100.0 32 ............................. CTTCTTCGCCGCGCAGGAACTCCAGGCGGCGC 32141 29 96.6 32 .T........................... TCCGCTTCGGCGTGCACCCGCATCTCGTCCAA 32202 29 96.6 32 .T........................... CAGGGCGTCCTCATCGCGCTCGAAGAGGACGT 32263 29 96.6 32 .T........................... CCCCGGGGGGCGGCCGTCTTCATCAGCTCTCG 32324 29 96.6 32 .T........................... GACTCATGAACGGCGGCACGGTGGGCGCCTCG 32385 29 96.6 32 .T........................... CCGGGAAGCGTCACCCGAGTCCTCGACGGCCT 32446 29 96.6 32 .T........................... CTGGACGTGCCGTTGAGCGCGGACCGCAAAAT 32507 29 96.6 32 .T........................... GGGTAGGGGGGTCCGCATCACGGGGACGCCGC 32568 29 93.1 32 .T..........................T GCCCATGGACCAATCCGGCCTTTTCACGAACG 32629 29 96.6 32 .T........................... ATGGGCATGTCAGAGAACGGGCGCTCCGAGAA 32690 29 96.6 32 .T........................... GGTCCGCGAACCGCTCAACGAGGAGCAGTTGC 32751 29 96.6 31 .T........................... CGGCTGGCCGCGAGGATGAGCGTCGATGTCG 32811 29 96.6 32 .T........................... GCGGCCCGGGTGGTGGATCAGGTGTCGGTGGC 32872 29 96.6 32 .T........................... ACCCGCCAACTGGAGGAACCGGACTGGGAACC 32933 29 96.6 32 .T........................... GTGACGGCCTGGCCCTGGTGCTTGGCGGCGGG 32994 29 96.6 32 .T........................... GCCGGGAGCGATTCGGCCCCCACGCGGTCCAC 33055 29 96.6 32 .T........................... ACGGAGGACGCCAGCATGGGCAGCACGGAGAG 33116 29 93.1 32 .T............G.............. CAGCTCCGCCAGACCGTGTCGCAGCGGGATGG 33177 29 79.3 0 .T.................A.G..A..TT | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.1 32 GAGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CCCCGGGATACGGGTCATCGGGGTAGGCCGACAGGTCGAGGGGGACCTGTTCCTGGAACTCGCGGACGAGCTTGCCGATGTCGTGGCAGCCAGTCCAGAAAGCGACCAGTGCGCGGGCGTGGTGTTCGTCCGTGCCCAAGCCCGCAGCAATTCGGCGCTTCAACCCGCTGGAGAGGGTGAGGTCCCACAGGACGAGGGCTGCCGCGGTGGCGTCGAGGGCGTGGAGGACGTAGGGGTACCGGTGACCGCGGAGGTGGCGTTCTTTGGCCCAGAGGCAGAGGTCGATGTGGGTCGGGTCCTCGGCGGGATCGGGGAGGTCGGGGGGATCAGCGGACATCCTGGTGTGCTCCAGCGGTCATGAGAGCATGGTGTGAGGTGAAGTTAGCGCCGGGGCGGGACTTTTCGCGGGGTTTTTGAGGGGATGGCCGAGACCGGCCATTTCTGAACTGGCCAGTAGGTCTCGCGGAGATAACACCCCGCGTTGTTGCAGGTCATTAAGT # Right flank : TTCGTCCCGTTGGCCAAGGCAGGGTTGTCTACGCGGAGACGAGGAAGCCGCGCGGGTGCTCGCCCCTCAGCTCACCGGCCAGAGCGCCCGCGTGGAAGGCGTCCCATTCGGCTTTGGTGTAGGTCAGGGTGGGGGAGTTGGGGATGGCGGTGTCGGTGAGGACGAAGCCGCCGTTGGGGAGGAACGTGGCGTGCAGGCGTCTGAAGACGGTTCTGCCACTCACGACCTGGTCGAGGAAGTACTCCCAGTCGGTGTGGGGGACGGTGAGCGTGGGCCCGGCGGGGTTCTTGGTGTCACCGATCTCGATTACGCCCGCGTACGGGACCCGAACCTGGACACATCCTTGAGGGTTAGTGCTGAGACTCGACTTCACCCATGCCGTAGGCAGAACCTGGTCTTCCTGGGAGGGGCTACTCACTTCAGCTCCTTGAGGGTTTTGGCGAGGTAGTCCGTGGTGTCCTCGGGACTCAGCGCGATCTCTTCCAGTCGCTTCAGCAGGA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 4752-8616 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEKI01000151.1 Nocardiopsis sp. RV163 contig151_size13791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4752 29 100.0 32 ............................. TAGGGTGACGCACTCCGAGAGAGCGTCACCCG 4813 29 100.0 32 ............................. GCCAGCCTCCCACCCGCCCGCGGGGCGCTCTG 4874 29 100.0 32 ............................. CCCCCGCCCACGACGCGACCACGGTGGTTGAC 4935 29 100.0 30 ............................. AGGACGCTGACGTGGACACCTACCAGATCA 4994 29 100.0 32 ............................. CCCAAGTGGTCGGCGTCCATCCGCCACACACG 5055 29 100.0 32 ............................. CCGCCCTGGTGGGAGGGTGGACCGGTGACCCC 5116 29 100.0 32 ............................. TTCACCCCCCGGCGTCCGGTGACCCGTGCTCC 5177 29 100.0 32 ............................. CCGAGCACGCTGTAGCCCTGCTCACGCAGCCG 5238 29 100.0 32 ............................. TTGGCGACGGGAGTGCCGCCCTTGCGTGTTGC 5299 29 96.6 32 ............................T CCACGCCTCCATCTCGGCGAGGGTGATGCCGC 5360 29 100.0 31 ............................. ATCCCCGAGGCGCAAACCATTCCGTCGTTCC 5420 29 100.0 32 ............................. TCCCTCTACGGCGGGCTGCGGTACCGTCTGAA 5481 29 100.0 32 ............................. GAACCGGCGGGGCGCCGCGTCGTCGGGGTGGA 5542 29 100.0 32 ............................. AAGCGCACCGACGACACCACCACCGGCGGCCA 5603 29 100.0 32 ............................. GGCGACGTGGCCGCCCCCGCCGCCGAGCTGTA 5664 29 100.0 32 ............................. TGCGGATCACTATCACCGCGGCCGGGAGCAAC 5725 29 100.0 32 ............................. GAGACCACCGTGACCTCGACCGTGACGCCCCC 5786 29 100.0 32 ............................. ATCGTCGACGGGCTCTCCCTCACGGAGAACTA 5847 29 100.0 31 ............................. GCACCCTGGTCGTCCTTGTGGCGGATGATCG 5907 29 100.0 32 ............................. CTGGCGTTCGACCCCAAGTTCGGCCGGTCCGT 5968 29 100.0 32 ............................. CGGACCGCAGCCCAGAAAGAGGATTTCATTTT 6029 29 100.0 32 ............................. CCCGTCCAGGACGGGGGGCGGCCAGGTGCGCG 6090 29 100.0 32 ............................. GCCGCCAAGCTCGCGGCCCGAACCAACGCCGC 6151 29 100.0 32 ............................. ACCTTTTGGCGCCCGTCCTAGAGCGGTTCCGC 6212 29 100.0 32 ............................. CACGGGTTCGCGCGCATGGACGCTGAGATCGG 6273 29 100.0 32 ............................. GGGCACCGCGCGCTGGTGTCGCCGACGGGCAC 6334 29 100.0 32 ............................. GGGGTGCCGGGGTGGCGTTCAACGCGGGCGCG 6395 29 100.0 32 ............................. CGCACGAACGCGCTCGGGCGGGCGGCCTCGGG 6456 29 100.0 32 ............................. GAGACATGATGCTCGCTCACAACACCATCAAC 6517 29 100.0 32 ............................. CCGCTGGTGCACACGTTCGCGCGCAGCCCTTC 6578 29 100.0 32 ............................. CCATCGAGTGGGTGCGTGAGCGTCTGCCCGGG 6639 29 100.0 32 ............................. CCATCGAGTGGGTGCGTGAGCGTCTGCCCGGG 6700 29 100.0 32 ............................. GACCGCCTGTCCGAGCTCGGGTATGAGCTGCC 6761 29 100.0 32 ............................. GGGTCGCCGGTGCCGATGTAGATCCGGTGTCG 6822 29 100.0 32 ............................. GACACCCCATGGGCAAGCAGGACGAGACCGAT 6883 29 100.0 32 ............................. TCTTGCCACAGGTCCTCTGTCATGACGATGGG 6944 29 100.0 32 ............................. GGTATGGGAAATCGCCCCTGAGAGAGCGCGTT 7005 29 100.0 32 ............................. GGTTGGTGTTCTCCGGGGTCTGCTCCAGCGCG 7066 29 100.0 32 ............................. GCCACCGGCAACCGCTCAGCGAGCGTCGCCGC 7127 29 100.0 31 ............................. GTCCCGACGACGTTCTCCCCGGACTCGTTCA 7187 29 100.0 32 ............................. GGGCAGGAACGTCCGGGCGACCTGGTGTTCCC 7248 29 100.0 32 ............................. AGGCCGCCATGCAGATGGCGCGCTTCGGCGAG 7309 29 100.0 30 ............................. GTCATCCGGTTCTGGTTCGGGGAGTGCTAC 7368 29 100.0 32 ............................. CCGCTTTTCTTCACGGCGTGCTTGCGGCCGGG 7429 29 100.0 32 ............................. TCCTGGTTGCCGCGGATGCCTTCCAGCGGGCG 7490 29 100.0 32 ............................. CGGATCGTGTGGGTGTCGCCGGACGGCACTGA 7551 29 100.0 32 ............................. ACACACCAGACACCGAGCGGACCGGGAACCAC 7612 29 100.0 32 ............................. TCGACGGTGGCCTGCACCCCGTTCTCGGAGAT 7673 29 100.0 32 ............................. GCCCCGGGGTAGCCGACCGGGGCCACCGTGTG 7734 29 100.0 32 ............................. GCCTCGTCGGCTCCCGCTCCGTCGTCGGCGCC 7795 29 100.0 32 ............................. CTGGCGCGGATGGACGCCACCGAGACCCTGCG 7856 29 100.0 32 ............................. GACGCCTTCGAGGCCAGCACCCTGAACGACCT 7917 29 100.0 32 ............................. CTTCCGTTCGCGGACGTCTTCGACGGGCAGGT 7978 29 100.0 32 ............................. GTGCGGGAGGACGTGCTCGCGCAGGAACGGGT 8039 29 100.0 32 ............................. CAGTAGACACCAGAACCAACCAGCACGTCGGC 8100 29 100.0 32 ............................. TAGCCGCCCGGGACGGCGTCCTCCGGCGCGTC 8161 29 100.0 32 ............................. ATCTCCTTCTTCTTGCGGTTCGTGTGGGGTCT 8222 29 100.0 32 ............................. CAGCTCCACACGGTCCAGCTCCTTGCCTCGGG 8283 29 100.0 32 ............................. TTCCGCATGGGCGACGCAAGGTAAAGAGAAGG 8344 29 100.0 32 ............................. CGCGCCCTGGAGCACGCGGAGCAGGCGCCCGA 8405 29 100.0 32 ............................. GCGCGTGCCGTGTGCGGCTGCCCGCGTCCTCG 8466 29 100.0 32 ............................. AAGAGGACGTTGACCCGGGCCGGGGAGGTGCC 8527 29 100.0 32 ............................. GTTTTCCTCAGCTTGGGGTAGGCCATCTGTAC 8588 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.9 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGGAGCGATCAGCTCGAAGAACTACTGACCACCGACCTCTCATGCCGGGGGGCGGCAGTCCACACAGTCCTCCCGGCACTCGCCGTAGTTCGTCATCGACATCGACTTGCACCGTGTGCACAGCAACCGCTTCCCGCCCGGCGGGTCGTGCCGCCACTGGTGGTGGCCCCGGCGGCAGATCCCGGACGGCTGGATACGGGTGCGGTCTGTGGAGGTCTCCATGGATGCTCACCGTAGCCGTGACGGGACAGGCGGGGAAGGCCAATCGGCCACACCCGCACTCAGCTCCTGCCCAAGCTCCGCCCTCCGGTACGGCCTCCTGGTCCAGAGTGTGGGCGAGTTCGTTGGTGATGGCGAAGTCGCGATAGCGGTTAGGAGGCAGCGGGGATGAGCGCCGCCGTGTGCTGTGTGAGGATGTACGCAGATGCCAAGAGCGCTCAGCATGCCCCGCGTGAAGGTTGCGGGGAGATAACGGCTCGCCTTTTCGCAGGTCGTTAAGC # Right flank : CGTCTTGGGAAACTCCCGCCTGGCGCGGCCGGGTCTCGGTACGCTCGCCGGGACGGTGGTGCCGAGACGCGAGAGGGCCTGTGGTGCGGGAGATCGAGACGAAGTACCGGGTGGCCGACCTCGAAGCGCTGCTGGCCGCGCTCAAACAGGCCGGGGTGTACATGAGCGACCCCGCCTACCAGGACGACCAGGCCTACGCCCCCGCCGGCTGGCGGCCGAAGCTGGGCCGGGTCGGCCACACCTTCGCCCGTGTGCGCACCCAGGACAGCGTGCACCTGCTGACCACGAAGACCCCGCTGGCCAACGCCATGGAGTGCGTGGAGTACGAGACCATCGTCGCCGACCGCGAGCAGATGCACGGGGCCCTGCTGGCGCTGGGCTACGAACCCACGGTGCGCATCGTCAAGCACCGTCGCACCGGCACCACAGGGCCCATCGGGGTGTGCGTGGACCTGGTCGAGGGCCTGGGCGCCTTCATCGAACTGGAACTGGTGGTCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //