Array 1 752965-749805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085963.1 Campylobacter gracilis strain FDAARGOS_1548 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 752964 36 100.0 37 .................................... TTTAAACCAATCGCTCCAAAGATAAACTTTATGAACG 752891 36 100.0 37 .................................... CTATAACGGTAAAGCCGGTTTTCATGAATTCCTTAAG 752818 36 100.0 37 .................................... TTTTAAACCAATCGCTCCAAAGATAAACTTTATGAAG 752745 36 100.0 42 .................................... TTTATAGGTCTTAAATTTCGCAATAAAAACCTGCTCCATTGG 752667 36 100.0 40 .................................... AAAACTCCCATTCGCCACCTAACGAGTAAGCGCAGTTGCG 752591 36 100.0 38 .................................... GACTTGGCAAAAACCGCCTTCGGTTACTTCGTTTAAAG 752517 36 100.0 39 .................................... ATTTTTCTCCTTTAAAAAGGACTTTCTTTTTATCTGCAG 752442 36 100.0 40 .................................... ACCGTTCTCGAGTCCGCTCCAATTGGCGAACCACACCTCG 752366 36 100.0 41 .................................... CCAATTCGCCCCAATCCTCGTTAAGGAATAAATCTTGTCGG 752289 36 100.0 37 .................................... ATATTAGCACAAAAATCAGTGTGACCCTCATTTATGG 752216 36 97.2 40 .................T.................. GTCGTGCTCAAACCTCTGTCCTAAATGAACCTGTACCATG 752140 36 100.0 36 .................................... AAGTCTCCTCTTTGCCCGACCTTTCCGACGAGCAAG 752068 36 100.0 42 .................................... CTCACCAAGTATTTCCCATTAATCAACACGGATGGGATATAG 751990 36 100.0 41 .................................... ACATGCACCCTAGTTCAGCCTTCTTTCTCATTTTATTCTCG 751913 36 100.0 45 .................................... GATGTCTTGTATCTCTGAAGTTGTTACGTTTCCTAGTACTCTAGG 751832 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 751758 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 751684 36 100.0 41 .................................... ACTCTGTCATACACTAGGCTATAGAAGTCTTGTCTTTTAGA 751607 36 100.0 38 .................................... CTCAATTATCTTACCCTCTTTAGTGGTTCCGTAGTCCA 751533 36 100.0 39 .................................... AGGTCATCCTCACTCTCAAATATGATGTTCTTAATCATA 751458 36 100.0 38 .................................... GTTAGCTTGTACGTTAATAAGATAGCCTTTAGAGTACA 751384 36 100.0 37 .................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGCA 751311 36 100.0 40 .................................... TTTATAAACGCCTCATACCCTCGCCCAAATTTTGCGTCAA 751235 36 100.0 44 .................................... AATCATAGGCAGCACTCACTTCTAGAAGCATTGCTACGTCTTGA 751155 36 100.0 44 .................................... AATCATAGGCAGCACTCACTTCTAGAAGCATTGCTACGTCTTGA 751075 36 100.0 39 .................................... TCCCAACTTTACTGAGTTACGCATTTTATGCTCCTTGAA 751000 36 100.0 37 .................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGCA 750927 36 100.0 41 .................................... TTTAGGAAATGCGCTGACTCGTCCGCATAGTGTTTCACCGA 750850 36 97.2 43 .............C...................... GCCTATGCTGTAACTGCTATTGCACTCGCCGGCTGAGATCGCA 750771 36 97.2 41 .............C...................... AAGCCTTCCAACCGATTAGAAGCTCGCCAGTTGGGAGACGA 750694 36 100.0 41 .................................... CTTAACATTGAACTTCTCCGGGTCTATCATCATTGCTATTA 750617 36 100.0 43 .................................... CAGCTTGAGTAAGCTTTTTTGCCATAGTTCTCTCCTTTTACGA 750538 36 100.0 43 .................................... CTCAAAAGAACGATATATCTTTTGGCATCTGTCAGCGTCAGAA 750459 36 100.0 42 .................................... TTTTCGGCTAGAGCAATAGGATTTTGCGCATAATTAGGCTGA 750381 36 100.0 39 .................................... AAGCGCACGATTCTCATACGCATTTACACGAACGCCCTA 750306 36 100.0 42 .................................... CTGACCGTCTTTCTTAACTCCGAAGTCTTTGTCTTTGTTAGA 750228 36 94.4 42 .................T.....G............ CTCCACAGTTTTGATCTAAGATTTTTTCTAATCGGTCTAGTA 750150 36 97.2 45 ...A................................ GTCTGGCATTTTTTCTCCTTTCTGAAAAAGATTAATTTGTTAAAA 750069 36 100.0 39 .................................... ATCGATAAGCCATATTTACTGCCGCAAAACTCGATTTTA 749994 36 100.0 42 .................................... AAGATATGGTAACTTAGCATAGTAAACTCCTTGAATTAATTA G [749966] 749915 36 100.0 39 .................................... GTTAATCCTATCTTTTAGATTTGCCATTGTATTTTCCTA 749840 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ============================================= ================== 42 36 99.5 40 TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTGTATGGCTAAAAGCGAGAGCCTAGGCGAAGGTGAGATCTTTCGTTCCCCTGGCACCTACGTCTAAGTCCCATTTTTAGGGATTTGATTTTCGGACTTTTCTTAAATTTAAAACCCCGAATTTAGCGCACTTTTATATTCTATTAAGCTTTAAAATGTCCGCAAAGCTTAAATTTCGCTCGCGCCAAAAACCCTTTCTCGGACTTCCGCTATTTAGCCTATTTTTAAAGCCCCATTTCTAGGGCTTTTTACGTTTACGAAATTTAGCAGAAATTCGAAAAAGCCTAAAATTTTAATTTTTGCGTTTAGATTTTCGGACTTTTGCGCTTGTGTAAAGACGCTTAAATCCGTACTTTTAAGCCCGCTATAAGTAAAAACCTCGAAATTTGAAATTAATTTTTCGCCTCTTTCTCGGACTTTTTCGCGTTTTGTGATATAATGGCGCTCGCAAATAGTTCTTTAAAAACTCATTGTCAATTTGAATGAGGTTTTTGGGCTG # Right flank : AAACGGGTTTTGCCTCGTATGATGCTGTATGATCACGCTGATTTGATTAAATTTCAAGATATACGACTAAAATTTAATGGATTTTTTAAAAGCACTCCGTAAATTGACAGAATTTGACAACTAAACTCCTTATAATCACGCTCAAAGTTGATATGGCGGGTTTGAATTCTATGAATAATTTTGTTATTTTTCGAAAAAGAATTTTAAAATAAAGGAGAAAGTATGAAAATTTTGTTTAAAGTGTTTTTGCTTGGTTTGATCGGAGTTATGTTTTCTGGTTGTTTTATCGTAATGCCGCCTGATAAAGAAACGGTAATGGCTCAGCAACTAGATGTTTGGTGTATCCTTAGAGAGAATAAGGATAAGGAAAGATATGAGGAATCTAAACGTAAGGCGGAGTCGTTCCTTGATAAAGATAAATATGGAGATAGAGTTCAAATAGCTCCGAGAGGAGAGTATAGCGTTTCGCTATTAGATAGAGCTTTTAGTGGTGACAATCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1742310-1741953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085963.1 Campylobacter gracilis strain FDAARGOS_1548 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1742309 30 86.7 33 T.C.C...T..................... CAATCCGGGCGTTCGTATCGGAAGTGAAAACGG TA [1742297] 1742244 30 96.7 34 ........T..................... AGCACAAATGGCACGCTAGCGATATAAAAATACC 1742180 30 93.3 37 ...T....T..................... TGAGCGACCGCTGCCCGATCGAGGTGAAAAGGGTAGG 1742113 30 100.0 35 .............................. CGCTTCGAGTCTGCACGCCGGTGGCCTTTGCTTGG 1742048 30 100.0 36 .............................. ACTACTGGAGCGCATTTTAGGGCATATAAGGATATG 1741982 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.6 35 GTAGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : CGGCGTGCGAGATCTTTTTGCCGTTGTTTTTGGCCTCGACGGCATTGTGCAAAATGTTGAATATATCGCTCGTTTCTAACATATGAAAATTATACAAATTTATTCGTTAATTATACATAAAATCGTATAAAATGAATAAAAATCGTGTTATTCATAAGTAAAAATAGCAAAACGCTTCGTTTATCCGTATGAATTATACAGAATACTGCATAAAATAAACATAAAATTTTATAAAATTTTGCATATTATGCCGTAAAGATGAACCAGCTTGCACAAACAGGCATATTACAGAACGGCACATTAAATTTTAAAACGGGGATAGATGAAATTTTACACATCGAAGCTTTTGGGGTTTGATTTTTTTTGATCGGTTTTGGCAGCAATTACAAACAAGATGTAATTTTACCCTATGCCGAGCCATATCTGCCAGTACAAAGAGCGTTTCAATTCCTAGTGGAATAGAATTCTACGGAAAGGCGGTGAATGCGGGATATGTGAGT # Right flank : GCTCTATTTAAAATTTCATCTTTTCCTCTTTCATAGTAGCATTCTATAGAATTTATCGAGCCAAATCCTACCCGATAAAAATTTTTACCAAACAAAATTCCGGCTTAGATTTTAAAATTTATCGAGCAAGGTTCTGCGCCTCAGAGCTTAGAATTTTAAATTTAAGAAGCAGCGACTTCAAGCTGCGTGGTTCGAAACACGAGGATTTTAGATTATAAAATTTTGAAAGGTCGGTAGGATTAGAATTTTAAAATTCAAAGTCAATGATCGAAATTCCAAACCGCGCAACTTGAAATTTCAAATCTGAAGCGGAAGCAAATTTTAAGATCGTTCCAAAATTTACCTCTTTTAAATTCACATATCTCAAGCTCTATTCATAAAATTTTACGTATTAATTTACGTAAAATTTAGCTGAAAAACAATGCTAGTATAAGCTTATCCGCATTAAATTTTATCTCTTCTTTTTAGAATAAAAACCGCCACGGACGCGATTATTAGCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 3 1744042-1743622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085963.1 Campylobacter gracilis strain FDAARGOS_1548 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================== ================== 1744041 27 82.1 39 G.T.A..T....-............... AGCCTGATAATAACAATACTAAGCCTAATAAACCCGAGT 1743975 28 100.0 37 ............................ TTTCTTCGAAAGGAATTTCTCCGCCGGTGCCCCAGGT 1743910 28 96.4 37 .....C...................... TCATCGAGCAGCAGCTCTTTCGTATCCCACTTTTGGT 1743845 28 96.4 39 .......................A.... TTCTGCCACTGCATTTATAGCGTCCCGTAGAAATGTGGA 1743778 27 78.6 100 .T.....TG...T-....A......... GCCTAAATGGGCTTATTGCACGATTCGCGTAGGAGGTAGAATTTATCTTGTTGAAATCAAAACGGATTTACGCGATACGCCTTTTGCGGCGGAAATGGGT 1743651 28 75.0 0 ...........T..C.ATA....T...A | A,T [1743628,1743643] ========== ====== ====== ====== ============================ ==================================================================================================== ================== 6 28 88.1 51 AGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : GTGGACAAGCCGCGCGAGGTCGCACTTGCCGAGCGCGAGGAGGCGGTAAAGAGCGAGCTGAAGAATTATTTCAAGCCCGAATTTATCAATCGCCTGGACGACATCGTGATCTTCAACGCCCTAAACGAGGACGATCTCATCAAAATCGTGGGCATTATGTTTAAGAGTCTGCAAAAAACACTCGCAAACCGCGGCATTAACGCGAGCCTAAGCGAAAATGCCAAAAAGCTCATCGCCTCGGCGGGCTTTGATATCGAATATGGCGCAAGGCCGCTACGCAGGGCACTTTACGATCTAGTGGAGGATAAGATCGCCGATATGATCCTAAGCGACGATATCAAAACCGGCGATCGGATCGAAATCGGCGCGCGTGACGGCGAAATAGAGATAAAGAGGGCAAAGTAAAATTTAGCGGAATTTATCCTGCGGGGTAAATTCTGCGCTTCTGCTAAGTAAATTTGGCGAGATAAATCTAATACTTTATTAATATAAATTGGGCG # Right flank : AGATTAGTTGTGGCTGGGATAGGATACAATATGGGGCACTTATATGAAATTTCATTCGGTTTCAATTCGCCTACTAAATATGTTAAATTTATGGATTACTAATGAAATTTTGGAGTTACTCACAAATTAAAATTTTAACGAACTGTATATTTGCCGCAATATAAATAGATTTAAATGCAACTTATTTAGTAGCAAATTCCAAAATATTTGTAAAAATGCACGCTAGGGATCTTAAAAGCTAAGTTAAAGTAAGAATTCCGCATTAATTTCAATTAAATTTACGCTACAAATTTAAGATCATGTGCCAAAGTTAGAATTTAAAATTAAATTAGATGATACCAAAGAGGCAGAAAGATGGAAAAATTTTTATAAAGTAAGAATTTGGCAACAACCTTTGAAACTGCAAAACAAAGAATATCGGCGTGCTCGTCATAAAAAGGAAAAATCATCTAAATTTAATGGATACTACTGCCTTTGCTACATAAAGTATAATAATTAAA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //