Array 1 349734-351226 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWW01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain G105 scaffold_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 349734 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 349795 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 349856 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 349917 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 349978 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 350039 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 350100 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 350161 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 350222 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 350283 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 350344 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 350405 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 350466 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 350527 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 350588 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 350649 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 350711 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 350772 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 350833 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 350894 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 350955 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 351016 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 351077 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 351138 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 351199 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 367358-369322 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWW01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain G105 scaffold_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 367358 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 367419 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 367480 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 367541 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 367602 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 367663 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 367724 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 367786 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 367847 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 367908 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 367969 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 368030 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 368091 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 368152 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 368213 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 368274 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 368335 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 368396 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 368457 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 368518 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 368579 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 368641 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 368744 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 368805 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 368866 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 368927 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 368988 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 369049 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 369110 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 369171 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 369232 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 369293 29 96.6 0 A............................ | A [369319] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //