Array 1 130073-132307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPFD01000003.1 Shewanella hafniensis strain ATCC BAA-1207 sequence003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 130073 28 100.0 32 ............................ ATCAGTAGGGAATGCCACCGCTGGTTGAGTTG 130133 28 100.0 32 ............................ AATCAAGGCCTTTTAGGCGCTGAAATAGATTG 130193 28 100.0 32 ............................ AAGACAGGAACATCGGCTACACTAAACGCTAC 130253 28 100.0 32 ............................ TGCGCATCAGCGCCTTTTTTTGCCAATTCTAT 130313 28 100.0 32 ............................ GAGTATCTCTCATACTCTGATGCAGTCATTTT 130373 28 100.0 32 ............................ TTTAGCGCCTCTTTTGTATCAACGCTGACGTT 130433 28 100.0 32 ............................ AATATTGGATTGAAATACTTCCCTGTGTTTTC 130493 28 100.0 32 ............................ GTTGGGGATAATGGACTTCTCCAACTAAGGAA 130553 28 100.0 32 ............................ TGTTACTGTACCTGCATACGTGGTTTCACCGC 130613 28 100.0 32 ............................ AAGACAGGAACATCGGCTACACTAGACGCTAC 130673 28 100.0 31 ............................ GCATTCTCACCAACTGAAGCAGTTAGCCTAG 130732 28 100.0 32 ............................ AACTGAAGCAGTTAGCCTAGTATCTAATTCAG 130792 28 100.0 32 ............................ TAGTATCTAATTCAGATCTAGCTGCTACCTCA 130852 28 100.0 32 ............................ AACTAAGGCACTCTGTGAAGCGGCTACGGGTA 130912 28 100.0 32 ............................ ACTTGAGTAATGTTTGAATCAGCCGCATTGAT 130972 28 100.0 32 ............................ GCTATGAAATGGATGAGTGCTTCTTTCCTGAT 131032 28 100.0 32 ............................ TAAAATGGGTCATCTAAAATCAACAAGTAGGG 131092 28 100.0 32 ............................ ATTTCGCTTTTAACTGATAGTCGACCGTCACT 131152 28 100.0 32 ............................ TGCTCCGTCAATGTACCCGCGTTTAACTTCAA 131212 28 100.0 32 ............................ TAATGCAAGAATTACTCGGCCAATATTATGGC 131272 28 100.0 32 ............................ CACGAGTGGCATCAATCTCAAGCTTCGCTGAG 131332 28 100.0 32 ............................ AATAGAGAATTATCATCTGTTACGACTGATTT 131392 28 100.0 32 ............................ TCAACAAAAGCCTCAACACCAAACGCCATTAG 131452 28 100.0 20 ............................ CAGTGCCAAGTTGCAAGTCT Deletion [131500] 131500 28 82.1 32 .GCA.G.C.................... GTTTTAAGTGGCGTCATGAACGCTGTGTCGTC 131560 28 100.0 32 ............................ ATTAGTGAGAAATGCGGTAGGCGTACCAGTGC 131620 28 100.0 32 ............................ AATACGGTTGCGCCAGTCAAGACCTTTTAAGC 131680 28 100.0 32 ............................ GTTAGCCACACGCCATCGGTTGAACCTGTCAC 131740 28 100.0 32 ............................ TATTAATAACGATTCAAACGACTACCCATACT 131800 28 100.0 32 ............................ TTGCAGTGTCAGGTTCAACCGATGGCGTTTGG 131860 28 100.0 32 ............................ TTGTAAGGTAAACCTAAGCTATCAGCATAACT 131920 28 100.0 32 ............................ TCGTTTACGTTCGCTCATCTAAGACCACAATA 131980 28 100.0 32 ............................ TGTATTGGGGTAAGGTGTCAGTAACTTTGGCT 132040 28 100.0 32 ............................ TTAGAAAAGCCAGCCGCCAATAGATCGTTTAC 132100 28 100.0 32 ............................ GAGCGTCACGTCGCTGGGTTGTATCTCGTAAA 132160 28 100.0 32 ............................ TCTTGACGCTTCAACCGCTGCGCAATTTGTCG 132220 28 100.0 32 ............................ TAAAATTCTGATTCTATATTTGAGCTCTGTGA 132280 28 78.6 0 .........T..G.T.TA......T... | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.0 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : GAATATGCTTATTTTACCCGCCGACATGTTAAGTCACCGGATAAATTACGCAAAAACATCGATGCCCGAGCGGCGGTGATAGCGCAAAAAAATGGCTTTGATATCAGTGAGGTTAAAACGCGTTTATTGGCTTCGATAGACAAGCTTCAAACCCAGTCAAGGTTACCTTTTATCCATTTACGCAGCTTATCGACGGATAAAGCAGTAAACCCGGAGGATCGCAAAAAGTTTTTACTCTTTATCGAGTGCCGAAAAGTCACCGAACCGAGTAGCAATAATAGCCGCTTTACGTGTTATGGACTGAGTCGCCGATCGCCAACAGAGCAAGTCGCCATCCCTTGGTTTTGAGAGGGAATTGAACGCAAAAATACCCTTTATTTTCGCTCTTTAAAAAATTGATTTAAAAACAGAGTGTTACAACAGATGGTTTTTTAATAGGTAAAAAAGCATATTTTTACCTATCCGCCTGTTGTAACTTATTTTTTTGACGATATTCTATT # Right flank : ATCTTGTGAGGTGGTGCGCATTGCTGAGAATATTCTCAGCAATGTGTAGGGTCAGTTGCATGCTATTGTTTATCATGCTTAAAAGTACGCTTTTGGGTATGCATAGAAGATAAATCAATAGGATGTCACCGATGGATTTGGCCAAGCTTTCGCGGATTAGTATGAAGCACTTGATCACTTTGCATGTGATGCTCGATACCCTGAGCGTGACCGCCAGCGCCGAACGTTTATGCCTCAGCCCCTCATCCGTCAGTAAAACCTTAAGCCAGCTCAGGGACAGTTTGAACGATGAACTGTTCTATCGTAATGGCAACTCACTGGTAGCAACGCCATTGGCAAAACGATTAGGGCCAAGCGTGCAGCAAATGATCAATGATATGAATCAGATCATGAGTCAGGATGCGTTTAATCCTGCCCATTTTGAGGGGCGTTTCTCGCTTGCGATGCGCGAAAGTACCTTTGAGCTACTGGCCGCTAAACTCAGCGCCCATATTTTGAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2137-279 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPFD01000055.1 Shewanella hafniensis strain ATCC BAA-1207 sequence055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2136 29 100.0 32 ............................. TTTTGGATTTGTGAGCGGTTAGTCATTCTGTC 2075 29 100.0 32 ............................. TAATTCTAGTCCGGCTTCAGTTGGTTGATAAT 2014 29 100.0 32 ............................. CCCCTCTGCTCAGTAGAGTGTCCATTTTTATG 1953 29 100.0 32 ............................. CTTATCGTCTCGTTGCTGCTCAGTTTGAACGG 1892 29 100.0 32 ............................. CCGTTAAAACGTGCGTGAGCGCCTCCTTGGGT 1831 29 100.0 32 ............................. TCGCTCGTTTCAATTCTTTGCATCAGTAGAAG 1770 29 96.6 32 ............................T TCGGCGAACGTAACAGGAACTGCCGAAATTAA 1709 29 100.0 32 ............................. CTTGATTGAGTTGTCCTTATACCTCTAACCGC 1648 29 100.0 32 ............................. TAAGGTAATGGGAGCAGTATCATTCGGAACGG 1587 29 100.0 32 ............................. TAACAGGAGCGGATTACGCTAGCGTTCCTGAA 1526 29 100.0 32 ............................. TTGAAATCACCTATGCCACCGTTGCCAGTAAA 1465 29 100.0 32 ............................. CGTGAGTATTTATTGTTGAGAATTGCTTTGAT 1404 29 100.0 32 ............................. CAAAAATTCAATGGTTATTTACCTTTGATAAT 1343 29 100.0 32 ............................. TCAATCATATTTTCAACACCATGACACAATTG 1282 29 100.0 32 ............................. TTCACTAATGCCTGTGAATACAACTGCGAATC 1221 29 100.0 32 ............................. TCCGCGAGATACGTTTGATACTTCCTCAATCC 1160 29 100.0 32 ............................. GCCATTGCAATGGTATCTGGCTGCGAAAAGCC 1099 29 100.0 32 ............................. CTCAGCGGAAAATCGGAGTATCAAATGGATGG 1038 29 100.0 32 ............................. CACTGGCATACTCCTAACACCGTGTTCATCTA 977 29 100.0 32 ............................. CCAATACAATAGACACTGAATACAACAAAACC 916 29 100.0 32 ............................. TTGGTTTCGTTTGGTTTTGTAACCGATGATAA 855 29 100.0 32 ............................. TGTCGCGCCTACAGTCACAGCAATGCCCGGCA 794 29 100.0 32 ............................. TCGATAACTAACTCGAAGAAAAAGGTTGAAGA 733 29 100.0 32 ............................. CGCATTGACTGCGCTCACTCCACGCTTTCCCG 672 29 100.0 32 ............................. GGCGGTTTAGTCCGTGAAGTGGTACTCCCCGC 611 29 100.0 31 ............................. GATTGATTTCGGGCTTATTGAATTTGTTAGC 551 29 100.0 32 ............................. CGTACTTAAAACATTTCGAATTACAGCAAGCA 490 29 100.0 32 ............................. CAACTTTAACCTTCCATTCTTTCAATGCTAAA 429 29 100.0 32 ............................. CCATTTGGGTAAACTCTTGGGTTTGCAACTGT 368 29 100.0 32 ............................. ATATGAGCTCAACAATTATTGTCGGTGCAACT 307 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.9 32 CTGTTCCCCGTAAGCACGGGGATAAACCG # Left flank : AGAGGAAATACTGACCGCCGGTGAAATTACCCCGCCAGAGCCTTACCCCGATGCGCAACCGCCAGCATTACCTGAGCCGCCCTCAATTGGCGATACCGGACACCGGAGTAGCTAAATGAGTATGTGCATGATCGTAACAGAAGCGGTGCCACCAAGGTTACGCGGACGTTTGGCAGTATGGTTGCTGGAGGTAAGAGCTGGTGTGTATGTTGGCGATGTAGGGCAGCGCGTGCGCGAAATGCTGTGGCAACAAGTTGAAGGCATGGCTGAAGACGGCAATGTGGTAATGGCCTGGGCTACTAATACTGAATCAGGATTTGATTTTATTACCTACGGCAATAACCGGCGGCAACCTGTTGATTTTGATGGGTTAAGACTGGTTACCTTTTTGCCTGAGCCAGAAAAAAGCAATTAGCCAATTAGCTCTTTAACAAGCCGGAAAAATTGGTAGAAAAAAGCAGGCACTTTTTTCTATTATAAATCAGGTATATACTTTTAGT # Right flank : GAAATCACCCCAAGTGATGAACAAAGTCATAGGACTAGGTATGCCTATTCGCCTCAAGTGAGGCAGGGTGAGATTATGCTTTGTAAATTCTGTTAACATTTAGCTATTTTGTTCTTAAGTCGACTTAATGCGAGATTATTGATTGATATAAACACTGTTAATTGCTCGAAATTGAATCAAATGCTAAAATCTAAGGTAAGGACATCCTTATGAGTAACTACATAGTGTCACCTGAAACGTTTATTTTGTATTCATTAGCTGGTTTTTCTGTTGCGACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //