Array 1 2-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01001054.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_1054_length_234_cov_1.40936, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 63 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 124 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 185 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : ACCTGACATATTCTGCGGGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9656-9867 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01000100.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_100_length_9897_cov_4.98556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9656 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 9717 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 9778 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 9839 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCACAATTTGTGCTTTTGCAATTCACTTTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 334-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01000679.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_679_length_367_cov_1.38816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 333 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 272 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 211 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 150 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 88 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGACCACAACATCATTCAAACCGTATAACTACT # Right flank : C # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12280-9870 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01000059.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_59_length_31611_cov_4.47889, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12279 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 12218 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 12157 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 12096 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 12035 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 11974 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 11913 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 11852 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 11791 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 11730 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 11669 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 11608 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 11547 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 11486 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 11425 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 11364 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 11303 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 11242 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 11181 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 11120 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 11059 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 10998 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 10937 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 10876 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 10815 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 10754 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 10692 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 10631 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 10570 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 10509 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 10448 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 10387 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 10326 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 10265 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 10204 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 10143 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 10082 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 10021 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 9960 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 9899 29 100.0 0 ............................. | A [9872] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31579-28825 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01000059.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_59_length_31611_cov_4.47889, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31578 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 31517 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 31456 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 31395 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 31334 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 31273 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 31212 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 31151 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 31090 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 31029 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 30968 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 30907 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 30846 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 30785 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 30724 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 30663 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 30602 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 30499 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 30438 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 30377 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 30316 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 30255 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 30194 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 30133 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 30072 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 30011 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 29950 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 29889 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 29828 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 29767 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 29706 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 29645 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 29584 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 29523 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 29462 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 29401 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 29340 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 29279 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 29218 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 29157 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 29096 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 29035 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 28974 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 28913 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 28852 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 45 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGATCACAGAACTGACCGGGTACACCATACC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 274-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01000832.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_832_length_294_cov_1.64935, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 212 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 151 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 90 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 29 29 96.6 0 .....G....................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAAGTGGTTTACCACAATA # Right flank : G # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 297-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXT01000797.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2841 NODE_797_length_308_cov_2.32653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 235 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 174 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 113 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TACGAGCGCGA # Right flank : GCACATTTCCTCAGTGTGCTTCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //