Array 1 1083235-1082207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074378.1 Lacticaseibacillus chiayiensis strain FBL7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1083234 32 100.0 33 ................................ TTGTTGCCGAGTTGATCGACGTTTGGTAGTGAA 1083169 32 100.0 34 ................................ TGCGCTATAGGCGCGGGGAATCTGAGCTGGGCAA 1083103 32 100.0 34 ................................ TGGGTATTGGCTGGCGGATTAATCAAGGCAAGCC 1083037 32 100.0 33 ................................ AGGTTGGTCAAGATATTCAAGCTTACGCCAGCG 1082972 32 100.0 35 ................................ TCATTCCTGATAAGAACGGCAAAACCGAAGAGATC 1082905 32 100.0 36 ................................ TTCCAATTTCCAAAGGTGCTTATGTACGGCGATCAG 1082837 32 100.0 34 ................................ ATGGAAGAGGAAGTTAGCTCGGTTCCGAGTGTCT 1082771 32 100.0 33 ................................ CAACCCGCTAAACGTCTTATCCATGAATGAAAG 1082706 32 100.0 35 ................................ ATTTCGTCGCAAGACGAGTGACAGCAATCGATCAC 1082639 32 100.0 36 ................................ CCAAGATTTGCAACGTGATGGTCATAAATGCGCATC 1082571 32 100.0 35 ................................ AAGTGACGCCTCCGAATCATCTGGATCCAATTGCC 1082504 32 100.0 35 ................................ ATCACAGCACGACTGGGAATTTGGTGTTCATTCCC 1082437 32 100.0 35 ................................ TTGACGGCTTCGATGTGAGGCTGTAACTCTTTAAC 1082370 32 100.0 35 ................................ CTATTGTACACCGCGTTATGCAAGTCAATGTAAAA 1082303 32 100.0 33 ................................ GGTTGCTACTTGGCCGGCACGCATGGTGGCTAC 1082238 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.8 34 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : CATACGTAAGCACATTGTCTTTCCAGACTTGTTCAATATGAATAAGTGCCCACTGACGTTTGCAAAAAACGAAATGCTGAATGCCAGATATTAAAAGCCAATCCTCTTCTGAATAATACAATCGAGTCACCTCCAAAGCAGCTATTAAATTCACCTATGCTCATTATTTCACCTATTGGCTTTGATTGCCAGCAGAAGAAGCCGAAAACATAGCGCTTACAAGCCTGCAGCCAAAAGTTTTTTTAAATCTAGTTGATCATATCAGGCAGGCATTGAAGATAAGTTAACGTACTATGTTATATTATTAGTGAAGAACAACATGTTTCGGCAATGAAGATCTAAGTGCGAATGTAAGGCACACATGAAAACGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTCTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : ATACCCCTTGTGAAGGGGCATTAGGGCGTTGAAATCATTCCAATCAATAGAATACACAAAGCAAAATTGTTGCTTTAATACTGCACTTTCTCCGCAAATAAACCAGCATGGAACCCGACTGGAAGTCTGTCACATGCCGGCTTATTGTTTAGACTGTTTGCTGAATCTACCCGTAGTTCCTGTCGTTATAAAGTCAATAAAATGAACATCAAAATTAGAAAATCAAAACTGACAGCGGCCACCAGAATTGGTCTACAATTTATACCGTCAATTTTCTCGACATCTGGTGTTTTTTATATGGTCGCCTCCCGATTCTTATCCATCCGTAACGCTATGCGGCTTGCCCTCAATCTTAAGCACCTCCTTCACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCTGTAACTTCTGCAACCCATCAAACGAAAAACCAAGCCGCCGCATCCAGTTAGTCATGACAAAAAGATACGGATCCGCCATCGAAAACCGTTTACCCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1093867-1095319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074378.1 Lacticaseibacillus chiayiensis strain FBL7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================================= ================== 1093867 32 100.0 33 ................................ GTCAATATAGGTATATGCAAGCCCACTACCATC 1093932 32 100.0 36 ................................ AGAAACAGGTGGATGCAGCACTGGCTGATGCAACAG 1094000 32 100.0 35 ................................ ACCGCAAACGCAAACAACAGATTCGTGAACAGAAT 1094067 32 100.0 34 ................................ TAAAGGCTTCACCAGATCACGAATCGAATAAAGC 1094133 32 100.0 35 ................................ ACATGAAACAAATACGAGCACCGGCCAAAACGTAG 1094200 32 100.0 34 ................................ ACAACATGAGGCAAAACCGATTCTGGCTCATTAC 1094266 32 100.0 35 ................................ ATGGATGAGTTTAGGGATAGCGGATATGCCGTGGC 1094333 32 100.0 34 ................................ ACGGTTCTTGGCCATGCCTAACATCGGGCCAAAG 1094399 32 100.0 36 ................................ TATGGCAACTGTATTGAGCATGGCAAACTTTAAGGG 1094467 32 100.0 36 ................................ ACGCTAACCTCACTCATATCCACATCAGACAGTTCC 1094535 32 100.0 37 ................................ CAATCGCTGATGTCACGCATCAGGGCGAATATCTTCT 1094604 32 100.0 33 ................................ TTTGATAAGCAAGATGAGATTGCTCGAGTCCGG 1094669 32 96.9 34 ......................A......... ATCACTAATGCCGGCCATAGTTTGAAATTTACGT 1094735 32 100.0 36 ................................ TGTTGGCGCGGTCATTCCCAGCGAAATAAAAGCAAC 1094803 32 100.0 35 ................................ TTGTTGCCGTCGTAAAGCTGCGGATTCTGGATCGT 1094870 32 100.0 35 ................................ AATAACTCTGATTGGCAGAACAGTATCGGCAATAC 1094937 32 96.9 34 ...........G.................... AGCCTTAAGATCAGCCCCATCTTGCTTGATCTCC 1095003 32 90.6 34 ..T......T.........T............ TGCTTCCGCTGCTGCGTGACTAATCCCAAAAGCT 1095069 32 93.8 33 ...........G..................G. ATAACCCGTGGTCTCTGCCATTTATAATTAAAA 1095134 32 96.9 121 ...........G.................... CCCTTGTGCTCTTAAGGTTGGTGAAGCACAATTTTTTTAGTCCACACGGCGACATGAATTACAACTCGCGACAGTCTGAACCAAAGCAACGTTGCAGTTAGGCGTTTTGATAACTACCTGC 1095287 32 71.9 0 A.........G.ACA.T..A....C.C..... | G [1095315] ========== ====== ====== ====== ================================ ========================================================================================================================= ================== 21 32 97.5 39 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGGTTCGATGAGCGTTCGGGATTATGGATAGCCAGAGAGAGTCAATATGACGAAGAATTTGGATTGGATACCACTGACAAAGCTATGAACTATTTTGTGTAATTGACGATCTTAAGTTGGGATTTAGATAACTTGATTTGTTGTCGAAGTCTCAAGGACAGTGTAGTCTGAAGTGAGCGATACTCGGTTGAACTGAAAACTGCTTTCTGGTGACAAGATGATTCTTAGCATCACTCTTTGTAATACCTTCCCTTGGTGCGAATGTGGGGTAAACATAAAAACCCAGGGAGATTCGCACCATTTTTATATCTTAAAGTACCGTGTTGACGTTTTATCTAGGCTTTTTGATGTGTATAGTTCAGCACCAGCCGCAAGATATTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TAACAACAACAATACTCAATAACTGTGGCTTTAACAAAATGGCCTCTTTCCAATAACCGGGAAAAGGCCATTTTATTATATTGAACATTGAATTACATCTCGTCCATGATTAATATCTGTAAATCAACAATTCCACAGGAAAATACGCTGTTTATTCACGCACTTTGACAGTTTGATGATCTTGGAAATATGCTTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAGCCGTCGTTTGCCTCAACGACTAAAGTACGATTATCCGCGGTAACACTAATATCAATGGAACACGCGCTTGGAGCTTCTTTCCAAGTCGCCACGGCAGCATCGATTATTGTGGGATCATATTGAACATGATAGTCACCCTTATAGGGGCGAACATCTAACACATGATGATTTAAAATAAAGCAGCGCCATTCGCGTACAAATTGGACAGGTTCACTTATCCAAATGGGG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2047578-2045826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074378.1 Lacticaseibacillus chiayiensis strain FBL7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2047577 36 100.0 30 .................................... TGTTTGATGGCTTGACTCTGGGCCCGATCA 2047511 36 100.0 30 .................................... ATTACGCACTTGTAGCTTGAGCTGGTTCAG 2047445 36 100.0 30 .................................... GGAGTGAGGTTCGTAATGTCTTCTTGGTAA 2047379 36 100.0 30 .................................... ATTATCAAAGTTAATGACAAAATTAATTGC 2047313 36 100.0 30 .................................... TCATGTTCATGTTATGACGCCGCAAGTAAA 2047247 36 100.0 30 .................................... TCCATGTTTCCATAGACATCACCTCATCGG 2047181 36 100.0 30 .................................... CACAGCTGCTGCACGGGCAAATCAAGTCTA 2047115 36 100.0 30 .................................... TGCTTGTGGCACGTACAAGCTCCCACTTGG 2047049 36 100.0 30 .................................... AGTGATCCTGCAAAGGGCGTAAGAATCATA 2046983 36 100.0 30 .................................... CTGCTTGCAGGCCGGCATCACCGCGACACA 2046917 36 100.0 30 .................................... TTTTGATCGTTAACTAAAACATACCAATCT 2046851 36 100.0 30 .................................... TTTAGGCAACCGTTTCGATTTTCTCGCTAA 2046785 36 100.0 30 .................................... TCGAGGATTAAAGCGCCGAGGTCATTGCCG 2046719 36 100.0 30 .................................... GTATCAGTGCCATATCCGTCTTTAAACGCC 2046653 36 100.0 30 .................................... ATCGCCATTCTGGGGCGAGGCTGCCGTGTT 2046587 36 100.0 30 .................................... TACGCAAGTAAGCGTTTTGGGGTACTAATC 2046521 36 100.0 30 .................................... CTGACAGTCTGGACTGAGATCTACGCTGGC 2046455 36 100.0 30 .................................... CCATCATCAGGCGAAAAACGCGCTACATAT 2046389 36 100.0 30 .................................... CGTCTTATACGGTTGTGACCCTTGTCAGGC 2046323 36 100.0 30 .................................... ATTCATGTTAGTACGCCTCGCCGTCTTGTG 2046257 36 100.0 30 .................................... AAGATCGGAAACGATTTTCCCAACTCTTTC 2046191 36 100.0 30 .................................... TTTTGATCGTTAACTAAAACATACCAATCT 2046125 36 100.0 30 .................................... TTTAGGCAACCGTTTCGATTTTCTCGCTAA 2046059 36 100.0 30 .................................... ATTCATGTTAGTACGCCTCGCCGTCTTGTG 2045993 36 100.0 30 .................................... AAGATCGGAAACGATTTTCCCAACTCTTTC 2045927 36 100.0 30 .................................... AATTCAACCGCTGTGGCGGCCAAATATGCG 2045861 36 91.7 0 ..............................G.A..T | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAACTAGATTTGGACAAGTTGTTACAACGTTGGATTTACAAAAAGATTGCACAAATGATTGACGATCAGCGGCTTGTTGAGTTAATTGACCAATCGCAACATATGGCCATGGAATTGCTGAAAGATCCTCTTTTGAACGACCTTCCTCTCACAGTTGAGCCCGGTGGGAAGCTGGAACAAATCATGAAGTATTGTAACCTCCATTTCGATGAAGGGGTAATTGTAGAACCAGTTTCTAAAATTGAAGCAGTGATTCAAACCTTAACAAAGCTTGAGGAAAAACGCCTTGTAATATTGGCTAATGTCAGTCATTATTTAGGTGCTAAGGAGTGGAAATGTTTGGTGGATCAAGTTAGTGGCACCACACTGGAGATACTTCTCATTGAATTTTCAGATGTCGAACGAAAGAGTTTCTTTGAAGACTGCCAGTATGTGTACATTGACAACGACTTTATGGATAGTCGAGAGCTGATTGATTAAGAGACCGTGTGAAAACACCG # Right flank : TTTCAAATTGGTGTTAGTGGCCAAGCTTATTAGATAAAGAGCACTGATGAGGTTGGTCGTAAGAGTAATACGAATTTAACAAGATTGTATTTTGTCAAAGGCTGCTAATGAAATTTGCGGCTTTTGTTTGGCTAGACAAAAGAAATCTGCAAGTTGATTGTTAACCACTGTAATGCTAGGGCCTGTCTTAAAACTATTTCAACCATACCAGAATAGCCGAGATATAAACGGTTTCCAAGAAAACGGGGCCAATTTATTATATCGTGTTGCTAAGCGAATGCAATTCTTCACCTGATTGAAAAGGCTTTCAATCAGGTGGCGATCCCAGTAGACATGATAATCACAATCCCATTTTTCTTTTATGCTGGCTTTAGGTGTAATGGTATAGGAACCATGCTCGGTATCGATATAATCACGCAGATGCTTGGCATCATAAGCTTTATCGGCAATCACATTGACGCCAGCAAGTTCAAGTTGTACCAGCAATGGTTGCGCTGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //