Array 1 35542-35274 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCL01000066.1 Enterobacter kobei strain 149H5 149H5_S57_R1__paired__contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35541 28 60.7 32 NNNNNNNNNNN................. TCTTTAATCCGAGCCTCAAGGACATCGTTTGT 35481 28 100.0 32 ............................ GAAAACCTCCTGCACGGAGGCGCGAAAACAGA 35421 28 92.9 32 T....T...................... AGTCCGACACTGTGTTTCCGTCTGTTCAGTAC 35361 28 100.0 32 ............................ ACAATCTGAACTCCTTACCTTGTCACAGATGC 35301 28 78.6 0 .C.T.G...AA.............T... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 86.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGAAAAGTCATTTCAACGGGGCCATATCAAAACGTGAGTTCACTGCCGTACAGGCAGCTTAGAAATGTTGTACTTCAGGCGACAGCGGCAGTTTTTCGTTCACTGCCGTACAGGCAGCTTAGAAAGTGCACGTTCGTGTTCAACCCGCAGATAGCGTCGTTCACTGCCGTACAGGCAGCTTAGAAAAGGAAACCCTTCTGATCCATGAGAACGAATGGGTTCACTGCCGTACAGGCAGCTTAGAAACTACACTTCGGGTTACGATCAGCCATTTCAACTGTTCACTGCCGTACAGGCAGCTTAGAAAGTCGCTATGAGCTGCACCGGCTCAACAAAAACGTTCACTGCCGTACAGGCAGCTTAGAAAAGAATCCCGGAGGACGGGATGGTGTTAAAACTGTGCACTGCCGTACAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTCGCGGAATACAACGACGCCATCTATCAATAGTTCACTGCCGTACACGCAGCAACCATATGTAGTTCGGCACAAACACTGTGCCGCCTGATTATAAGCCCGGTGGCGCTAGCGCTTACCGGGCCTACGACGATCCAGCCCCTACAAGGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAACGGGGGCACCGCATCAGATTATGCGAGGACCAGATCCCCCTGCGGATGGCATGAGCACGCCAGCACGTAACCTTCGGCAATTTCCGCGTCGGAGAGCGTCATGGTACTGGTGACAGTGTACTCACCTGAAACCACTTTCGTCTTACAGCAACCGCATACGCCCGCACGGCAGGCGGCCACTACCGGTACCTTATTGCTTTCGAGTGCCTCCAGCAAAGTCGTTCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGTAGCTTAGTAAACTGAATCCCGCTGGTTGCCGCCTCCGCTACCGGCGTGAAGAATTGCTCCT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.32, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36366-35674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCL01000066.1 Enterobacter kobei strain 149H5 149H5_S57_R1__paired__contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36365 28 100.0 33 ............................ TGTTCCGACACTGCGTTACCCGTCAGCTGCGCC 36304 28 100.0 32 ............................ TGCAAAAATCCGCCACGTAATCAAGACTCGAC 36244 28 100.0 32 ............................ GTTGGCAGTGGGTTCACTCTCACAACGCCTGA 36184 28 100.0 33 ............................ TGATGGTTGGTTATGCACGAGAAAAGGGAACGA 36123 28 100.0 32 ............................ TGCACTAACTGATTGATGCGAGGGTAGTTGTA 36063 28 100.0 32 ............................ AGTCATTTCAACGGGGCCATATCAAAACGTGA 36003 28 100.0 32 ............................ TGTTGTACTTCAGGCGACAGCGGCAGTTTTTC 35943 28 100.0 33 ............................ GTGCACGTTCGTGTTCAACCCGCAGATAGCGTC 35882 28 100.0 32 ............................ AGGAAACCCTTCTGATCCATGAGAACGAATGG 35822 28 100.0 33 ............................ CTACACTTCGGGTTACGATCAGCCATTTCAACT 35761 28 100.0 32 ............................ GTCGCTATGAGCTGCACCGGCTCAACAAAAAC 35701 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCACAAGTTATTCGGCGGCGTGGGCTTTATCAGCGGCATGCTGGTGGAAAAAGGGTTGCCGGGGTTTATCGCTTATGGCGTGTTGATTGGCGAAGTGGTGGCACCGATGTTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGATGCTGGCGTTTACGATGATTGTGGCATGGCTTATGGTAGGAATGGGTGAAACGCTCGCCCTCGATAAGGTTGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATTGGCTCGCTGGCGGTGGCATTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAGCACCGGCGTGGCGTTGAGGTTTGTGCTCTGGTATGAAGGAAGGGGTCTATAGACCCTTTTTTATTGGCTGTTTTTAACTTATTGATTTTATTGTGCTGAAATGTATGTGAAGAAAAAAGGGATCGAGACGATTTTTTAGGTTATTTCTTTATCTGACAACGTGATAGGTGTAGATTGTTCCA # Right flank : AGAATCCCGGAGGACGGGATGGTGTTAAAACTGTGCACTGCCGTACAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAATCTTTAATCCGAGCCTCAAGGACATCGTTTGTGTTCACTGCCGTACAGGCAGCTTAGAAAGAAAACCTCCTGCACGGAGGCGCGAAAACAGATTTCATTGCCGTACAGGCAGCTTAGAAAAGTCCGACACTGTGTTTCCGTCTGTTCAGTACGTTCACTGCCGTACAGGCAGCTTAGAAAACAATCTGAACTCCTTACCTTGTCACAGATGCGCTTAGTGCAATACAGGCAGCTTATAAAGTCGCGGAATACAACGACGCCATCTATCAATAGTTCACTGCCGTACACGCAGCAACCATATGTAGTTCGGCACAAACACTGTGCCGCCTGATTATAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //