Array 1 6598-7689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQS010000039.1 Veillonella ratti strain MSK.5.12 KOINNDPD_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6598 36 100.0 30 .................................... GATATGAGCGAACGAGGTAAATATTTAGTA 6664 36 100.0 30 .................................... AAATATGCCCTGATCTGTATCTGCCTCTAT 6730 36 100.0 30 .................................... GCAAGTCATTACACGATATACGCCCGCTTT 6796 36 100.0 30 .................................... AACATGGCGGCGCATGGCTTTGTGTATCAT 6862 36 100.0 30 .................................... ACGTAAGACAATCAACGGCGCCGGTGTTAG 6928 36 100.0 30 .................................... TACAAAAAGCCGTAATAAAGAAAGTAAAGG 6994 36 100.0 30 .................................... ATGGTTTTACGCGAACGCCTGAAATCATAA 7060 36 100.0 30 .................................... TACAATAAACCTTGTTGTTCCGTGTAGTTT 7126 36 100.0 30 .................................... AAGAGAAATCATGTATGACCTTGCTATGAA 7192 36 100.0 30 .................................... TATCCGTATAAGTCTGTTTGTTTTCGCTAT 7258 36 100.0 30 .................................... TATACTCATAAGACTCCCAACAAGTGAAAG 7324 36 100.0 30 .................................... AGGTCGGCAGGATTCGGCGCGAAATACTAC 7390 36 100.0 30 .................................... GCCAATTTTTGGCGGCAAGGATATAATATA 7456 36 100.0 30 .................................... TTTCTTTAACGATGATGAACTAAAGATGAT 7522 36 100.0 30 .................................... CCGGCATATGCTGTAATGTATAACAATGAC 7588 36 100.0 30 .................................... CGTACGCGCTAACGGAACGTTATGACAAAT 7654 36 91.7 0 .............................T.A.T.. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTTGAGAGTAGTGTAAAACTAGTTTGGTCTCCAAT # Left flank : TTCTATTGCGACGGAAGATGTAGGACTTTTATTTGAAATCAATCAAAAGATTCAAGAACTGTTTATGGCTTTAGAGGGGAGTTTAAGCCTTGATGTAACCTATAATAATCTCATAACTGCACAGGATATTGTAAAGTTGGGGAATTTTATGATTTGCGATGATGAATTTGACGATATTGGTAAAGTTATTAGTTTTATTGAAGTAGTCGTGGATTTGATCCGGCCAAAGTTATTAGTTATGCTCAATCTGCGTAAATTTATGACAAATAGTGAATTGGAATTATTTTTTGAGACAATTTTGTGTAAAAAAATACCTGTTTTTTGTATAGAAGGTAGTGATGCGGAAGAGATTTCAGTTGTTCAAGAATTAGAAGTATTATATACTTTAGATAAGGATTTATGCGTGTTTTAACTGACTGACTAGAATTACACCTGCCTCGTAAGCTGAAAAATCTCTCAAATCTTTAAATTCAGCATTTTGGGTAAAAATGCAATTTGGG # Right flank : TTCATTTGTCAATAAATAGTATGAAATATCCTCTCTTTTTATACTGATTTAATCAAAATTGTACATTCATATATCATCAGTTTTGTGCGTATGAGAGTATCATTTATAAGCTTTATTTCGGCTTTTCTGTAAAAGAGCCAATTTTAATAGTTGTATATACTATCGTGTTATTTGATGCTGTAAAGTATGTAAGTCTAGTAGTGGCGTTTGAGAGTAGTGTAGAGCTAGAGTGGTCTAATTAGTGTATAGGGATAAGTGTGCTTTATTCGTACTTATCTCTATACAATATCTCGTTTTCTAATATTCCTCACAAAAAAATGTAAAAAAATTCATTTTGCCTCTTGCACACAAATTAAAATCGTGCTATTATATTTAAGTACCTGAAACAACGGTATTGCGGCCCCGTGGTGTAGCGGTTAACATGTCGCCCTGTCACGGCGAAGATCGTCAGTTCAAATCTGATCGGGGTCGCCATTTTTTTTGCCTCAAAAAAATATTTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAAAACTAGTTTGGTCTCCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //