Array 1 44274-49300 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJJ01000019.1 Phocaeicola barnesiae DSM 18169 = JCM 13652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 44274 35 100.0 35 ................................... ACATAAGAAAGTTTTACCTTGGGCTTCTTTCTGTA 44344 35 100.0 35 ................................... TAACGCAAAAAGCCGTGGCCAAAGGCTTCGGTGAT 44414 35 100.0 33 ................................... CCAGACACAGGAGTGACTGCATACGGGTTCTGA 44482 35 100.0 33 ................................... AGTATATCAGAAGCGGTATATAACTCTACTTCG 44550 35 100.0 34 ................................... ATAGATCCGGCTCCCAAGCTGGTGCCAAGGTTGA 44619 35 100.0 33 ................................... GTCTTGGGCTTTAGTTTCCACCTTATCCCAGAA 44687 35 100.0 34 ................................... GTACAGGATACCATATGGTGTCGTGTACTTCTAC 44756 35 100.0 33 ................................... GAATGTTGCTGTAATTCTGTCATCCACATCGTA 44824 35 100.0 33 ................................... CACTAACATACCAGCAGCTATCGCCACCAGATA 44892 35 100.0 36 ................................... GCCTTCAAACGTCTTTCGGATACAGGACGTCCGTCG 44963 35 100.0 35 ................................... ACTTGCGGCAGAATGCGGTACCCCGCTTCTCCTAC 45033 35 100.0 33 ................................... GTCAAATTCAGTAAGTACAATAGTCAGAAAGTC 45101 35 100.0 32 ................................... AGCCACGAAACAGGAAACACCCATCGCTTTGA 45168 35 100.0 31 ................................... ATACAATTCATCAAAGTTTCCGGCGGTATCA 45234 35 100.0 35 ................................... ACCATAAACAGCTCCCAGCTATGAAACAGGAAACT 45304 35 100.0 35 ................................... GAAGAAGTTACCTTGCAGCGCTTGTTTAGTTCGTC 45374 35 100.0 34 ................................... AGAAGAAGACCCAAAGGTAATCTTCATTGCAGCA 45443 35 100.0 35 ................................... CTCTTGCCTTCATTGAAAATATCCAAATCAAACAT 45513 35 100.0 33 ................................... TTGATTTAATTGTTGAACATGATGATAATTTGT 45581 35 100.0 35 ................................... TCGGCAGGCTTCTTATTATTGGCTCTACCTAAATT 45651 35 100.0 35 ................................... GACGTTGAAGCGTCGATATTCTGGGTCAGAGATGT 45721 35 100.0 35 ................................... ACGGCACGCCGTCGTGCATCATTTCTACATATGGC 45791 35 100.0 34 ................................... TCCGGATCGGGATCCGAATTAGGATCGTCGCAGT 45860 35 100.0 35 ................................... CCTACCGACAGCATCAGAGCATTATAACGCTCTGT 45930 35 100.0 37 ................................... ACACCTTGGCTGAAGGCTGCGTCAACAGACGCCGGAA 46002 35 100.0 35 ................................... AACAAATCATAATCAAGATTAAAACAGCCATGTTT 46072 35 100.0 35 ................................... CTCCCGAACTTCATTTTCAGAAGCCCCCTTCATCT 46142 35 100.0 35 ................................... CTCCCGAACTTCATTTTCAGAAGCCCCCTTCATCT 46212 35 100.0 34 ................................... GTGTATTTACGGATTTTTCTCGCGCTGATGAAAA 46281 35 100.0 36 ................................... AACTACTCTCTGTGCATTCACTGCTATCGCAGCAAA 46352 35 100.0 35 ................................... GACAACTCATTAAGCTCTTCGTAAGCGCAAGAGCT 46422 35 100.0 34 ................................... GCTATTCCGTAGATGTCATCTAAGTTGCTAACAT 46491 35 100.0 34 ................................... GAGATTTGTACATCTTACCGTCCTTGCCATTTTT 46560 35 100.0 36 ................................... TATGTGCCGTCATCGTAATATCCATCCTTCCAAGGA 46631 35 100.0 34 ................................... TCTAGGAATACTTGATTCTCCGGCTGGAGATAAA 46700 35 100.0 34 ................................... GCTGAGGTCATACCCGCCCAGTACTTTGAAGTAC 46769 35 100.0 34 ................................... ATCAGTACAGAGACTTCACATCGGACTTGGACAT 46838 35 100.0 34 ................................... CGGCAATCACCTTAACGGCTTCGTCATAGGTTTT 46907 35 100.0 34 ................................... ATCAGTACAGAGCCTTCACATCGGACTTGGACAT 46976 35 100.0 34 ................................... AAATGCTACAACGACGCCATTAACCTTCAGGACA 47045 35 100.0 34 ................................... GAGAGCAATAACAACCTCGTAGCAGCATTTCTCA 47114 35 100.0 36 ................................... TTAATAATGGATAATCCTATCCTGATAAACTTTGCC 47185 35 100.0 33 ................................... TAGCCTCTTCACGATTAAAGAGGATCCAGTAAT 47253 35 100.0 35 ................................... ATATCTACCAGAGCGCGGAACTGTTCTTGTGTCAA 47323 35 100.0 33 ................................... ACTTCCTGCGCTGAAGCAGGGTTAAATACTGTT 47391 35 100.0 33 ................................... GAGTTCCCGGCTTTTTTCCTTCGATGAAACTTT 47459 35 100.0 34 ................................... AATCAATCCGTGTGCCTTGGAAGGTGGTATAGGC 47528 35 100.0 36 ................................... TTGTCATGTTCCAAAGTGGCAATAGAGGTTACTACA 47599 35 100.0 33 ................................... GTTCTGATACGACATGAACAACCTTCTCAATAA 47667 35 100.0 36 ................................... TTTTGAAGGTGGCGCCGCCGGAAGCACCTAAATATA 47738 35 100.0 35 ................................... AGAAACAAGCCTTTTACCGCATGTTCCATCTGCAT 47808 35 100.0 35 ................................... AGTGAAACTGATGGTTCCAACTTTGTTGGTTGAAC 47878 35 100.0 35 ................................... ATCATATTTCCGTTAAATCCGGCTGTCCAGAACAA 47948 35 100.0 35 ................................... AACATTCATACTTCAGATGCGTCGGGTAAGAAGCA 48018 35 100.0 31 ................................... GCTGTTTTAGCAGGCATATCAGTAAAGTGAT 48084 35 100.0 33 ................................... AGCAGCCACCAGCCAAAATCCCCAGCCGAGGAA 48152 35 100.0 36 ................................... AAGCAAATAACATAGTTCAATCCTCCCAGTTCTTTA 48223 35 100.0 33 ................................... GATTTGTTCCCTTGTAGTAGTCAGATTTATAGA 48291 35 100.0 35 ................................... AAAGAATCCTCTTCGCAAGTTGAGGAAACGTAATT 48361 35 100.0 33 ................................... TTAATCTCATAGCTTCAGCCTCACCTGCAGCCT 48429 35 100.0 35 ................................... GATTGTGTCATGAATTGTGATATACTCTTTCTGCC 48499 35 100.0 37 ................................... AAGACAGGCATGCTTTTTGCGGACTCTGGGTGCGGAA 48571 35 100.0 33 ................................... ACATAATAGTCATATTTCCTAGCCACTCTTTCG 48639 35 100.0 34 ................................... GCTCCCATATAGGAATTAATTCCGCCTTTAACGC 48708 35 100.0 34 ................................... AGTGTCTTTGGAATTTTTCACTAAGTAATTCCAG 48777 35 100.0 36 ................................... GAGATAGAGCTGGTGTTCATTGCGGTGAACTGACTA 48848 35 100.0 35 ................................... GTTGTCACCCGTCTTGGTCCAGTCCCGATCCTTGT 48918 35 100.0 34 ................................... CGTATACCACCCTTAAAACCAGTGACTTTCTTGT 48987 35 100.0 34 ................................... CTGTCTTGCATAGGATTCGTCAAATCCGTTGACT 49056 35 100.0 35 ................................... TCCATATTCTCACTTATTTCGGCGTTCAGAGCGAT 49126 35 100.0 34 ................................... AATATATTATAGACACGTTGATAATCATTGAAAA 49195 35 97.1 36 ......................T............ TTTGACATGCTTTCAGGAAATTTTTCACAGCTCTTT 49266 35 94.3 0 ........C..........A............... | ========== ====== ====== ====== =================================== ===================================== ================== 73 35 99.9 34 GTATTTTGATTATCCATTAGAACAAGGATTAAGAC # Left flank : CAAGCGCTTTCAAATCCGGTGGTTGCCCCTTCATCGATCTTTTCCTGTCGATTTGTAAAGATTTTTATTTGCGAAAATTCAAAACTGCACAAATTACTCATTTACAGGTATTTGACATTTACCCTCATTCCGGGTCTCTCTCAAAAAGTTCGCAAATCTCCTTTTTCAAGGAAATCCGGAAATCATTTGCGAAAAAATGGAATTAGTCTTAAAAAATGAGCATTGACTTTCAGCTTGTTACACATCCCTCAAACAGCGTTTTTTCGCAAATGTAGATTCTTATTTAGACAGCCTTTTCATTTGCGAAAATATTATTCGAATCAATCAGCTATATATCAACGAATTAAGCAAAACAGACAGCTGATTTTCTTTAGAATGACATTCTAAAAAAGGTAGATTTGCGAAAATTTTTGCCTCAAATAGCTAACTTATTGATTTATTTCACTATATTTGTCAAATAAAAGAAATCATGAGTTCTTTAACTTATTGATTCTTAGGTT # Right flank : CAACTGATAGTGAATTGTATCAGTATAAATCTGATGTATTTTGTTATTCTTTGGAATAAATGTCAGATAGCTGATAATGTGTAACTTTAATCCTGTACAACCATGCAGAATCCGACCATGTTCCAGACCCTGTGTACCCCGACTTTCCTGTTCGAAGCCTGGAAGGCCGTCAAGGCCAAGAATGCTTCGGGTGGGATAGACGGGATTTCTGTGGCCGCTTTCGAGGATAATCTGGAGAGTTATCTCCGGGAAATATCCGAATCGCTCAAGCTGGGAAAGTGGATTCCCGAACCTTACCTGCGGATAGAGATTCCGAAAAAGGACAACGAGAAACGGAAGCTGGGACTGCTCTCGGTCAAGGACAAGATTGTGCAGCAGGCCATCAAGATGCTGGTGGAACCTTATTTCGAGAACGAGTTTGTGGACAACAGTTACGGGTACCGGCCGAACAAGGGACATTACAAGGCGGTACAACGTACCTGGAGCGAGTGCAAGAAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTTGATTATCCATTAGAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 54989-52440 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJJ01000019.1 Phocaeicola barnesiae DSM 18169 = JCM 13652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 54988 35 100.0 34 ................................... AATTGCAATTGGTTGGGATCTTTCCTTCTTAGCT 54919 35 100.0 34 ................................... CAAAGCTACCGTCATCACCGGCTGGTCTGTCGGC 54850 35 100.0 33 ................................... AAATTATTTCACCTATTATGATGTCTGCTTTCT 54782 35 100.0 36 ................................... AAACATCAAGTTGAGGTGTTACGCTTCAACGAACTG 54711 35 100.0 33 ................................... TTTGGAGTGGTCTTACAGCCGCTCTGAATTGGT 54643 35 100.0 36 ................................... GCAGCACATAACGCCATCCGCCTCGTGGCAATTTTT 54572 35 100.0 36 ................................... AAGGAGAGGCCGGAAGTGTGCGGACGCCGTGGTTGA 54501 35 100.0 35 ................................... ATTACACCAACTCCATTGGTGTGTATGGAAGAGTC 54431 35 100.0 33 ................................... CGACCGCAACGGCGTATCAAACGCCTATTATTT 54363 35 100.0 37 ................................... CTGGCGAAGAGCCAGAAATAAACAAACCGGATGAAAC 54291 35 100.0 36 ................................... AAAACTGAGATTGCTGAATCTCAGAAAAATGAAGAG 54220 35 100.0 34 ................................... ACAAGGATCGGGACTGGAAAAAAACGGGGAAAAA 54151 35 100.0 35 ................................... TCGTTTGTATGGAACGAGGCTATCAAAGAAGCGCT 54081 35 100.0 36 ................................... AAAAGCCTTGCTTAAAGGCGACTTCCGCGCTTTAGA 54010 35 100.0 36 ................................... AAAAGCCTTGCTTAAAGGCGACTTCCGCGCTTTAGA 53939 35 100.0 36 ................................... TATAATTCTAACAAACGGACAATATCCGTTAAAGTT 53868 35 100.0 35 ................................... ATGCCCGGACATGCTGGGTATAAAATCACGTTAGG 53798 35 100.0 35 ................................... TCACTTTGGTGAAGTCAAACGGAGGTTCCGGCGAT 53728 35 100.0 34 ................................... GGGTGTATGGACGAGTTTTCTCCTACAAATATAA 53659 35 100.0 34 ................................... GTATGAGGGCGAAACTGTCAGCAAGGACTCTACC 53590 35 100.0 35 ................................... TTCCAATAACGGATTTGGTTTTTAATTCTTAAATT 53520 35 100.0 32 ................................... CGAAGAACCAGAAATAAATAAACCGGATGAAA 53453 35 100.0 33 ................................... ACAACAGACTCATTGTCTGTGCAGCACTCGCAT 53385 35 100.0 36 ................................... TCATGGGTAAGGATATTGACAACTCATGGTATGTTG 53314 35 100.0 35 ................................... TGTATATTTAGACAGCTGACAAACGAGGGACATTT 53244 35 100.0 33 ................................... ATTCATAGGAATTACTGGAATAATGGCCATTTT 53176 35 100.0 34 ................................... CGTTTTCCGGACAGACAGCGATGGTTTCGTTATT 53107 35 100.0 36 ................................... AAAACTGAGATTGCTGAATCTCAGAAAAATGAAGAG 53036 35 100.0 36 ................................... TATCACAAAAATGTTGCCTGCGAAGTTGAGATACTT 52965 35 100.0 33 ................................... ATAAACAAACCGGAAACTCCGGTTGCCGGTGAT 52897 35 100.0 36 ................................... TCTTCTATCGGGATACTATTTCCCGATATGTGGGAA 52826 35 100.0 35 ................................... ATTGGAATGACAACGCCGTAAGGACATTCTCATTC 52756 35 100.0 34 ................................... GGCACACCGTGCAACGGTTGTGATGACCCGAACC 52687 35 100.0 36 ................................... TTGCATATACCTTGCTCATAATCACTGTCGTCCTGT 52616 35 100.0 36 ................................... TTAAAAACTAAATTGAAATATCTTTCTTAGTTTTTT 52545 35 100.0 36 ................................... ATTTATAAAGTACAAATACATAGTAACGGAATGTCT 52474 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 37 35 100.0 35 GTCTTAATCCTTGTTCTAATGGATAATCAAAATAC # Left flank : TCATACTCTCGATTAATTATAAACAAAGTTCCAACAGTCCATTCCGTCAAATACAAACAAATAAGCATATTCTCTATTTTGTCGAACTTATACTAAGAGAACATCATTATTAAATAATGACGATTCAACGGAATTATCATTTCAATAAACAGGCCTATGGGCTAACAAAGGTCTTTTGACACAAAATATATTAACATACCATTGGCAATATTAAGCATTTAGTCTGAATAAACCAAATTTTTTACTTTTTTATTTAAAGAGTTTTTTCTGCTAAGTATCTTGTAATGTTATAAATCAATAAGTTCATTCATATCGGATAACACATTATTAAAGTGCTCCTTAACTTATCTTTGTAGGCTAAAAGTTACAATAGATGTATCACGGCAGGATTAGCTACCGCCATAGCCAAATACTCGCAGCAGCAAGATTGACTCGTATCAAGTATGAAACTTTACTGATAATAATGATTCAGATCAGATAATCATAGAGATGTCGGATTT # Right flank : AACTTGGGAATCAATAAGTTAAAGAACTCATGATTTCTTTTGTTTGACAAATATAAGCAAATAAATCAAGAAGTTAGCTATTTGCGGTAAAAATTTTCGCAAATGTCCATTTTTTAGAAGCTCATTCTAAAGAAAATCAGGTCATTTGTCTCTGTTATAATCTGATATACAAGCAGTTGGATTCGATGGATTTTTCGCAAATGAAATGACTGTCTAAATAAAAATCCACATTTGCGAAAAAAACGCTGTTTGAGGGATGTGTAACAAGTTGAAAATCAATGCTCATTTTTTAAGATTAATTCCATTTTTTCGCAAATGATTTCCGGATTCTCTCAAAAAAGGACATTTGCGAACTTTTTTAGAAGCAGCTGAAACGAAGGGAAATACTCAATATGCTGAAAATAAATACTTTAATGTTTTTCGAATTTTCGCAAATAAAAATCTTTACAAGCCTATTATTCTGAAGTTCCAAACCTTGTCAGACCACCCGGACTACCGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTCTAATGGATAATCAAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 114849-106759 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJJ01000010.1 Phocaeicola barnesiae DSM 18169 = JCM 13652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 114848 29 100.0 35 ............................. ACAAACATATTGACCAGCAACTGGTCAGTAGCAAC 114784 29 100.0 35 ............................. ACAGTAACGGCAGCAGTATCTCCGAATTGAGCTTC 114720 29 100.0 35 ............................. TGTGCTATTATTCTTTGACCAAGAAGACACGCTCG 114656 29 100.0 37 ............................. GATGCATATGAATGCCCAACAGGCTGAATCTATTTCT 114590 29 100.0 36 ............................. ATTGAAGTTACCGAAGAAGATGCGAAGGCAGCAGTA 114525 29 100.0 36 ............................. TCGGAAATACAATCCAGGATAATGGATATTGATTCA 114460 29 100.0 35 ............................. TATAATTATGAAAGTAGATAATATAGAAAATGTTT 114396 29 100.0 35 ............................. TTCAGCCGCGACCAACACGGGCGACCAATCAGCCG 114332 29 100.0 35 ............................. GTCGGAACCATGCCTGTAAAGAACATGATATAACT 114268 29 100.0 34 ............................. CAAGCAGAGCTGGGCACGGAGTGCCCAGCGGTGG 114205 29 100.0 37 ............................. AATGCTAGATGACCCATGCCTGCAACGGTTTTATCGT 114139 29 100.0 34 ............................. GATTTAGGCCACCATGGAAGTAATTACAGTCATA 114076 29 100.0 36 ............................. AAAAACATGCTGTCCAGCATATTCCAGCAACCGCAA 114011 29 100.0 37 ............................. CCTGTAGTTCTATCTGCCTTTTCTTCTTCGTAAGGCA 113945 29 100.0 36 ............................. AGGTGATTATATGATACCGACTGCACTGGTTTCCCT 113880 29 100.0 35 ............................. GGCTATCCAGCGGGCTAGATTGAACAACCTCACGG 113816 29 100.0 37 ............................. TTGCGGGAAATTATAGGCCACCCTATATATATCACGT 113750 29 100.0 35 ............................. TAACTCTCTTTGAGCGCAAAACTCTTTCACGAATG 113686 29 100.0 38 ............................. GAAATCCCAGTACGTAGGTATCACCGATGCCGATATAC 113619 29 100.0 36 ............................. TGCCGATAAAGAACATGGTATAGCTTGGAAAACGAA 113554 29 100.0 35 ............................. ATTGTAAACCGGAAAATGTGGAGCAATATCGTTTG 113490 29 100.0 35 ............................. GTCTTTTAAGTTGTTGAATTACCTTGGTTATGGTA 113426 29 100.0 34 ............................. CAAGGTACACATGATGTTGAGTTTGCAACATTGA 113363 29 100.0 35 ............................. CGGTGAAAAGGTTTTTGAAAGTCAATTTACCGAAG 113299 29 100.0 35 ............................. ACTGACTATGCTGTGCCGGAATATGACCGTACAGG 113235 29 100.0 35 ............................. AATTCATAAGTACACGAAGTTGAGAATCATTCAGA 113171 29 100.0 37 ............................. GAACTAAGGCTCGTGCTAATGAGGCTGATATATTGCT 113105 29 100.0 36 ............................. GCATATTAGATAAACGATTGGCGCTGGTTAAACTGG 113040 29 100.0 37 ............................. ACCAATGATGCCACCGTTGCAGGTCAGGGGCATTTGG 112974 29 100.0 37 ............................. ACGTATATTCCGCCGCCAAATCACTATACCTGCATGA 112908 29 100.0 36 ............................. TGGGGGAGGGAGTTCCCTAGGTGCAGCGGCGGCACG 112843 29 100.0 35 ............................. AATACACCGCTGTACAGAACACTATCTAATTATGG 112779 29 100.0 37 ............................. AGTTGAAAGGACTATATCTCAAGACAAACACGGGTAT 112713 29 100.0 34 ............................. AGGCTAACAACAAGATGGGAGGTCTGATTGTTTC 112650 29 100.0 38 ............................. GCAAGTAGTCTTTATCACCTACCCGGAAATCCGCCGCC 112583 29 100.0 34 ............................. ATGCGTCCGCTGATGCGGCCGCTCTGCTGATGAC 112520 29 100.0 35 ............................. ACTGAATTATAAACCTCGTTTGCGGCCACATAGTT 112456 29 100.0 34 ............................. GTCTGAGCCATGGCGATAAAGTACATGGTATAAC 112393 29 100.0 36 ............................. CTTCACCCAACTTGCCAGCCGCTTGACCCCAAAACA 112328 29 100.0 34 ............................. TATATCATCACAGATACAAACACGCTTACACGTT 112265 29 100.0 36 ............................. TGTTTAGCAGGTCTTTCCCGTCCGCCTTGATGGAAA 112200 29 100.0 37 ............................. GGTTGCGTCTATATCTGAACCGGAGGTCGGAGGCAAG 112134 29 100.0 36 ............................. TGTGTAGATATCGCTCATCTCCGAAATCGTAGCTCA 112069 29 100.0 36 ............................. ATCGGCGATATCCTCGTTTGTGATACCAACTTCCTG 112004 29 100.0 34 ............................. ATCGATGGATATGCAATAATTCTGTGTCTTCATG 111941 29 100.0 35 ............................. TGCTGAAACCTTACTATCCGCAGCCGGCCTGGTGG 111877 29 100.0 35 ............................. AGCATTCTATGTTTCTTACGTATTCTAAAGGTGGT 111813 29 100.0 35 ............................. GTCGCATGGCTTCGATTGTAACCGCATTCAGTGCT 111749 29 100.0 37 ............................. CCATTTACAAGTGTTGTAATAGCATAATTTGTATTAC 111683 29 100.0 36 ............................. TTCAAACGGTTCTACAATACCGTCACCGTCAATGTC 111618 29 100.0 35 ............................. GATAGAATCGGGCGTGAAAGACGCACATCTGTATA 111554 29 100.0 35 ............................. CATCACAGCCGACGTGAAGGAAGACTGGAGAGAGA 111490 29 100.0 35 ............................. GTATCTGAGTGGTCTTCCTTTAGTGTCTACTGGAG 111426 29 100.0 34 ............................. GTGTGTACAGCGGAGATCAGTCGCTGCTTACCGT 111363 29 100.0 38 ............................. ATTTTTGTTTTATTACGTTATGACTTATTTGTATTGTT 111296 29 100.0 36 ............................. GCAGATCTATTTGCGTAAACGTTCAGAAGGACAGAT 111231 29 100.0 34 ............................. AGTATTCTACCGCAATTAATAGGATAACCCTGCG 111168 29 100.0 37 ............................. TAAATCCTGCAAACTATCGGCTCTTTGTATCTTTTAG 111102 29 100.0 36 ............................. ATCTAAATACTGATAGTATAAATCTAGAGAATCCTG 111037 29 100.0 36 ............................. GAGGTCTCATCATTACGATGCGTTCAGTTTCAAATG 110972 29 100.0 34 ............................. CTCATCTCCGAAATCGTAGCTTACGAAATCTTGA 110909 29 100.0 34 ............................. AAGAAATCAGGGCCTACGTTCCTACCAGTGTGTA 110846 29 100.0 35 ............................. ATCACATCATGGAACAGCACCTCGACGTTATTTCT 110782 29 100.0 35 ............................. ACGACTACGAAGGTGCAACCGCCAAGCAATACACG 110718 29 100.0 37 ............................. TACCTTTCAGTGAAGATTTAGCTGATAGAACAACGGG 110652 29 100.0 36 ............................. TGGTTAGATAGTATTCTGAGTTGCGGTGTAGCCGGC 110587 29 100.0 35 ............................. ATGTGACCACACGGCCGCCGATGCGGCCGCTGACG 110523 29 100.0 35 ............................. GATAAAGGAAGATCTGGACGAACTTTCGGAACACA 110459 29 100.0 36 ............................. ATGTTACATCAGCTCCTGTGCTGACTTTCTTCATGT 110394 29 100.0 36 ............................. TAAATCCGCACAGGTTGATACGTTACCGGATTTGGA 110329 29 100.0 36 ............................. CTGGAGGATATGTTAGACCGTGCCGGGAAGGAGGTT 110264 29 100.0 36 ............................. ATACATTTCAGCAGGCGGTTGTATGCCTGCTGGCTG 110199 29 100.0 35 ............................. GCATAAAGCATTACATGATAAAGCTGTTAAACATA 110135 29 100.0 35 ............................. AGGCTATACCTGGAGCCGAAAGCGGGACTCACGGA 110071 29 100.0 34 ............................. AAAGTTGGACAGGTTCCTGTTAGGACTTAAAGAG 110008 29 100.0 35 ............................. GAGCTATACCTGCAGGTGGCCGGGAAGGTTGTCCC 109944 29 100.0 37 ............................. AAGACACAGGCACAAGCAATCCAGCGTGCTCGTCTGA 109878 29 100.0 36 ............................. ATACGTCTGACGGGAGCACGTGGCCGCCGATGCGGC 109813 29 100.0 36 ............................. CACCCATGGCCTTGGCCATGCGTTTACATCCACCTT 109748 29 100.0 35 ............................. TAAAGATGTTGTACGATGTTTGCAGCTTGTTCGGT 109684 29 100.0 35 ............................. TCTGTCCCTATATCATTAGAGCTTGTATCAGGTAT 109620 29 100.0 36 ............................. ATGCTATCGACGCTGTTGAGAAATATCTATATTCGT 109555 29 100.0 36 ............................. TACGGTATACCGGCACTAGTATATCCTTTCAGTTTG 109490 29 100.0 34 ............................. TTCTACCTGGAAGGTCTCGCTTACGCCTAAGAAA 109427 29 100.0 37 ............................. TTCATGTGCACCTACAAGTTCTTGTAACCTTTTTAAT 109361 29 100.0 35 ............................. GAAAAAACGGATGAAACAGGTGCGGTGCAAGTTTC 109297 29 100.0 36 ............................. GAACGACAAGGTATGGGGGCCGTTCTGCACACCTTA 109232 29 100.0 35 ............................. AAATGCTCTTGCAACAGTTGTGGGAGAACGACTTA 109168 29 100.0 34 ............................. AGATGAAGTAAATGCCTGTCAGAAAGCAATCCAT 109105 29 100.0 35 ............................. AATCATCTTTGTGAGCCTTAACTAGAGCAGACAAT 109041 29 100.0 34 ............................. GGTATCTGGGTTGTATCATCCGGATATACGTTTA 108978 29 100.0 37 ............................. GTTCTCCGGTCTGGAACTCCAACTTGTAAGTATATTC 108912 29 100.0 34 ............................. TGCATAAAATTCACCAGGTTTACATATTTGTGTA 108849 29 100.0 37 ............................. GAAAATCGTTTGTGCAGCACGGGTTTGACCTGGGTAT 108783 29 100.0 34 ............................. TAATTCTCAATTTTAATTGTGACATTGCCCGTAT 108720 29 100.0 36 ............................. TCCTTTCCACCTTCATGCTTTCGATTGTCCGGCCAC 108655 29 100.0 34 ............................. TAAGTTGTTGGCCAGACAAGACTATCTGGACAAG 108592 29 100.0 34 ............................. TTCGCTTGTCACCAACGACACGATTCCGGTCGAT 108529 29 100.0 35 ............................. AGTTCTATAGGAGGGTTAATCTGCACTTCTTCAGA 108465 29 100.0 35 ............................. GCATATCTGTAACAGAAATGTCTGATAGCATACTA 108401 29 100.0 35 ............................. AAGACACCGGATGCAAGTCCGGCTGCGGCACCTAA 108337 29 100.0 37 ............................. AATTGAATCCGAACATGACCATTGTCTTCTTCTCTTT 108271 29 100.0 34 ............................. GAATGTAAGGATAGGGTACGTCTTTTTCTTTTTG 108208 29 100.0 36 ............................. GTAGATAATTTTGCCCCTTTCATCGCGGCAGCTGGA 108143 29 100.0 34 ............................. AATGAACCTTTCGCTTTACCTTCAATACCTGTTA 108080 29 100.0 37 ............................. GAAGCTCACTTCCTGTTTCTGCGGCCGTCGATACGAT 108014 29 100.0 36 ............................. ATCATAATAGCTATTATTTTGTGTTTGTGTATACAT 107949 29 100.0 37 ............................. CCAACACGGGCGACCGGTCAGCAGCCACCAACACGGG 107883 29 100.0 35 ............................. TGAAATAAGCATTATCCAGCATGTTGAGAAGTCCT 107819 29 100.0 35 ............................. AAAGGTAAATCATCATAGAATGTACTTCTAAGATC 107755 29 100.0 36 ............................. CCGTTAGGTACTGCGAACAGGAGCAAAGCCAGATTC 107690 29 100.0 36 ............................. GGTACTTTTTGTCTTGTCATCGAGTATCATGGCACT 107625 29 100.0 35 ............................. GCGGAAGAAACAAGTAGTTGATAATCTCCAGTTCA 107561 29 100.0 38 ............................. GTCTATAGTCAGGTCTCTTTGAGAACAAAAGTTCTTTA 107494 29 100.0 36 ............................. GCATCCGCAGCCTGCTGGATGCGGTTGCGTGAGGAA 107429 29 100.0 36 ............................. AAAGACTCAAACAGCCAGTCGTGGATGAATACTTCG 107364 29 100.0 36 ............................. GGAACAAATAGAAAAACTGTTCCATTTCTATGCGGC 107299 29 100.0 34 ............................. ATACTTGATTGGACTGATGAGGATATAGCTTTAT 107236 29 100.0 37 ............................. AGCAGTAGAGATTTTCGCATACTTCGGGAGTGGGCGA 107170 29 100.0 35 ............................. GAACATTTGCGCACATTCTCTCTGTCTTTCCCGTA 107106 29 100.0 35 ............................. ATTACGCTGGAGTTCAAGGCCGATTTTGTTGATAC 107042 29 100.0 35 ............................. CTAGTTATCAGTATAGGGTGCCCTATCGCCTCTCT 106978 29 100.0 36 ............................. AAATAGAGACCTTTTGACCATAGAAAAAAATTTTAA 106913 29 100.0 34 ............................. AAGGAGGATTACGCACAGTACGGGAAGAATGCGA 106850 29 100.0 34 ............................. GTTCAAACTGGAACCGGTAGTTCTCGCTGTCATC 106787 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 126 29 100.0 35 CTTTTAATCGTACCTTATGGAATTGAAAC # Left flank : GTAATAAAATATGACAGCTTATGTATGTAATTCTAGTATACGATTTCGGTGAGAAACGAGTTAACAAAATGCTTAAGCTCTGCCGGAAATACCTGAACTGGATACAGAATTCCGTATTCGAGGGAGAAATTTCTGAAGCAAAACTGAAAGAATTGCTGATGCAAAGTGATAAATTCATGGACAAGAATGAAGATAGTATCATCATCTTCAGTGGACCTTCACAGAAAGCCCTCGACAAACAAATTGTAGGAAAAGAACGAAGCAGCATTGATATTTTTCTATAGCTCATTCTTGTCGATGTAAAGCTTTTACCATTTGCAATATAACAAGTCTTATAACACACGTTCTTTGACTTATTGATACACAATCATTTACCTATATTGTCGATAGTCAGTACTTTTTTTATTATTGACTATCGACAATATTTTGATTTCTTTTTTATATATTTGCCAATACTAACAGACTGAAAACTAATAATTTTTTTTATATTGGTTTGAAGG # Right flank : GAGATATGCGTGCCATGCTGAACGGGTAGCCACCGGAAGATGCAGTTTAGGGTTCACAAGGTTCATGGGTCCACTTTAGTGACCCTTTACCAGACAAACACTGTAAATTCTACAGCCTTTCTTCCTGACAATAGTCCGTTAAAGATTCATCATATCGGCTAAGCAGCTTCTGCCACTATGCCAAAGGGTTCTTTGACAAGTTTAGTATTAAACGTTCTGTTCGGTCGTAATCCGGACTTGCTAAAAATTCTTCTAGGCATGTAAATGTTACTCAAATAGGCTTTTAGCAGTCCTATGGAAAGCGATGGACGGTATTGCTGTTGCATAACCTTGGCGATGTTGACTGAAGCCAGTGACGCATTGAAAGCGAAGTCGAGCTTCTTCAAGTCTCGCGCCTGACAATCACTGAGTCCGGTGAACTGCTTGGAATCCCGAAAACAAAACTCAATCTGGAATCGTGTCAGGTAATATTCGATAATATCAGATCCAGCACCTGTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //