Array 1 146745-149701 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDI01000003.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIB .SLX_12186.D710_D507.HJ72NBBXX.s_1.r.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146745 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 146806 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 146867 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 146928 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 146989 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 147050 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 147111 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 147172 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 147233 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 147294 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 147355 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 147416 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 147477 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 147538 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 147599 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 147660 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 147721 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 147782 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 147843 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 147904 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 147965 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 148026 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 148088 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 148149 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 148210 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 148271 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 148332 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 148393 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 148454 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 148515 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 148576 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 148637 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 148698 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 148759 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 148820 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 148881 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 148942 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 149003 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 149064 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 149125 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 149186 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 149247 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 149308 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 149369 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 149430 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 149491 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 149552 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 149613 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 149674 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158142-159330 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDI01000003.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIB .SLX_12186.D710_D507.HJ72NBBXX.s_1.r.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158142 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 158203 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 158264 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 158325 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 158386 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 158447 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 158508 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 158569 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 158630 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 158691 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 158752 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 158813 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 158874 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 158935 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 158996 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 159057 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 159118 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 159179 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 159240 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 159301 29 96.6 0 A............................ | A [159327] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //