Array 1 942381-943446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073715.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2020LSAL11867 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942381 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 942442 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 942503 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 942564 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 942625 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 942686 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 942747 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 942808 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 942870 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 942931 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 942992 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 943053 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 943114 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 943175 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 943236 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943297 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943358 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 943419 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960011-961443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073715.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2020LSAL11867 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 960011 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 960072 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 960133 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 960194 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 960255 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 960316 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 960377 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 960438 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 960499 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 960560 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 960621 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 960682 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 960743 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 960804 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 960865 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 960926 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 960987 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 961048 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 961109 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 961170 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 961231 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 961292 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 961353 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 961414 29 100.0 0 ............................. | A [961441] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //