Array 1 38007-42415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEJW010000014.1 Shewanella sp. SE1 NODE_14_length_111600_cov_48.4677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38007 28 100.0 32 ............................ ATCACGGAAACACCATTCATGCAGCGCGGCAA 38067 28 100.0 32 ............................ GCATTAGGATTCACATCCTTAGCAGTCAACAA 38127 28 100.0 32 ............................ TAAACCTAAAAGCAAGACAACCAATCCATCAA 38187 28 100.0 32 ............................ TTATTCATTGCGGTAAACAACACCGCCTCATA 38247 28 100.0 32 ............................ TGTACACTTGCGCGCGTTGACCCTGACTTGAT 38307 28 100.0 32 ............................ TTGCAATGCCCAGGCCGCCCTCAACTTGCAAC 38367 28 100.0 32 ............................ TCATAGACGACATGTTCATCCGTGGTCGCTCA 38427 28 100.0 32 ............................ TCAAGGGAGGCATGGGCGTTAAGTTCAGGCAT 38487 28 100.0 32 ............................ AATGGAAAACTCCATTCAGAGGGAGGATGATT 38547 28 100.0 32 ............................ ATCCTGTGAACCATTTGCTTATCTTCCATCTC 38607 28 100.0 32 ............................ GGTCTGGTTAATATGGCCAACAACAGTGTCCA 38667 28 100.0 32 ............................ GCCCATTGCCCTTGATATCGTCTCTCCCTTTA 38727 28 100.0 32 ............................ ATTCTTCCTAATTATGCAGCGCCTTCACATCG 38787 28 100.0 32 ............................ GTTCGTTCCAGGCGTGGCGATAAATCAAAAGA 38847 28 100.0 32 ............................ TTCCTTGGATGCTTATCCATTAACAGTAGAAT 38907 28 100.0 32 ............................ GCCAACGAAACCATAACAATGTCATATATATT 38967 28 100.0 32 ............................ TACTAGAAATGAGGGTTATGTTCATGAGGAAG 39027 28 100.0 32 ............................ TATGAGGCCAATCGGAACAAGTGGCATTAACA 39087 28 100.0 32 ............................ TGAACTCGTAACTACAGAGTTTACTAACTGGG 39147 28 100.0 32 ............................ ATTCATGCAGCGCGGCAAACTCTCGGCTTACG 39207 28 100.0 32 ............................ ACCCCCGGACACCTCATCGTTACAGTCGGTCA 39267 28 100.0 32 ............................ TTCACCTGGTTCTCAGGTAGTCCATCGCTTTT 39327 28 100.0 32 ............................ ACCCGATGGTTCGTTTGCTTCCTGCGGAATCC 39387 28 100.0 32 ............................ AGATATGGAGACTTGCGAGTTCCTTGGGATGG 39447 28 100.0 32 ............................ GAGTACCCGCCGGAGAAGGTCTACGATCTCTT 39507 28 100.0 32 ............................ TACCCGGCGGCAGCTCGATGATGGCGAAGATG 39567 28 100.0 32 ............................ AATCACATAGTCTATGTACGTGCTAAATAAAT 39627 28 100.0 32 ............................ CAGGGCTTTATGCGATCAAATCAGAACGTGGT 39687 28 100.0 32 ............................ TCGATATCACTGTCCAAAATGGCTCAAACATG 39747 28 100.0 32 ............................ CAGGCTGCGGCTCCTGCGCATGAACAGAACCA 39807 28 100.0 32 ............................ TTCTTGCGCTCTTCCATCAGGCGATCATTTTC 39867 28 100.0 32 ............................ AATGTCTCCGTCTATATCTGCAACAGAACTTT 39927 28 100.0 32 ............................ AATTGCCGGCAGAGAGCATCACAAGGAATGGT 39987 28 100.0 32 ............................ AAGTATCGGCAGAAGGTTGGATACCAGAACAT 40047 28 100.0 32 ............................ AGATTCGTGCAATAGCAAGCTTGCCAGCGATT 40107 28 100.0 32 ............................ AGGCGCACCATACAAGACCCATACGACACAGT 40167 28 100.0 32 ............................ CGACAAAATCAAAACTGGCGTTTTCTTCATCG 40227 28 100.0 32 ............................ GAAGCCATTTGCATTGAGGCTGTGAAGGAAAA 40287 28 100.0 32 ............................ TAGTACCTCTGCCATGGATGAGTCGACTAAAT 40347 28 100.0 32 ............................ TATCGACTATACGGTTGTTGTGTAGAGTTTAA 40407 28 100.0 32 ............................ ATCGGAAAAGCCTAAGCAATACACCGACAACA 40467 28 100.0 32 ............................ GCAAAGTTGTGATGAAAAGGTGATTGGAACAC 40527 28 100.0 32 ............................ CTTGAGCTCTATGAGTACTGATCACTGCAGGA 40587 28 100.0 32 ............................ TGGGTCTGTACCTGGGTCTGTTCCTGGGTCTG 40647 28 100.0 32 ............................ TATCCATTCGGCGACAATAAACAATCATTTCA 40707 28 100.0 32 ............................ AAGTTATGTAGAAGTGCTTTCCGGGGTAGTAT 40767 28 100.0 32 ............................ CCTTGGCGCAGCTGTTCTAAAGAAAAGGTTAC 40827 28 100.0 32 ............................ ATGCTCGATATCAACGTAAGAGCGAAACTCAG 40887 28 100.0 32 ............................ TTCTGGTGGGGGTAGTTGTGTTGTTTACGATT 40947 28 100.0 32 ............................ TAGAATCAAGGCTATGGCCAGCAGCTTGGGCC 41007 28 100.0 32 ............................ TGTTGGATATTTGGGGCTAACTGGACGCATCC 41067 28 100.0 32 ............................ AGATACTGTCCGCAGCAGCTACAAAACCAGAA 41127 28 100.0 32 ............................ AGCCACGCTATTAATATGTCTAATTGTATCGC 41187 28 100.0 32 ............................ AAATTCGAGATATGCGATTTATGGCCCTGGTT 41247 28 100.0 32 ............................ CACTCAAGGCGGCACAAGCGCTCTTATTTTCT 41307 28 100.0 32 ............................ TGCCGCGGCGGCTGTGTCTTTGGCGAGTTTTG 41367 28 100.0 32 ............................ ACTATCACACCTATGCGGGAGAGAATTACATT 41427 28 100.0 32 ............................ TGTTCCGTTGCATCGGTAGCAATGGGTTTGGC 41487 28 100.0 32 ............................ TTTGTTTGATTGCAGGTTTTCATACAACTGCA 41547 28 100.0 32 ............................ TGAAAAATCGGATTCAATAGAAATGCCGTTGC 41607 28 100.0 32 ............................ GAAATGAGGACGCCAGACGGAGATTTAATTCC 41667 28 100.0 32 ............................ TTTCTGAGCAAAGCGGTGAATCTGTCTGCTAC 41727 28 100.0 32 ............................ ATAACAATACCGATGATGATTACACCAGTTGC 41787 28 100.0 32 ............................ GTCCGTGTATTCACGGATTGGCTTGCCGTTGA 41847 28 100.0 32 ............................ AAACCTGCAACCTTATATGCAAGGCGGCTGGG 41907 28 100.0 32 ............................ ACCATGGAACACGCCATCATGGAACACGCCAC 41967 28 100.0 32 ............................ GAAACGTATCGCGGCACAGACGTTGGGCTGGG 42027 28 100.0 32 ............................ AATCGTGGCGCGATAGAGACTTAGAGAAGTTT 42087 28 100.0 33 ............................ AACTGACGAGCATATTCCACGGCAACAGCTTTT 42148 28 100.0 32 ............................ ACACGTTGGCAATGGTGGTGCCAAGGGCTTTT 42208 28 100.0 32 ............................ ATACATGGGCGTTACTGAATATTAGATAACAA 42268 28 100.0 32 ............................ TGCACCGGCAGCTGATAAAGCTCGGTGACATG 42328 28 100.0 32 ............................ GTCCTTTCTTACGGGGGGTAACTCCACGGTCG 42388 28 92.9 0 ..........A.....A........... | ========== ====== ====== ====== ============================ ================================= ================== 74 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTTTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTGTATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTGCGGGGATTTATCTACAACCTCAGCAATATCTGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGTAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGTGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGACCGCCAAGTCTGACGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //