Array 1 18556-19667 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFR01000029.1 Lentzea xinjiangensis strain CGMCC 4.3525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================ ================== 18556 30 56.7 140 ......GGT...G......A.TC.TCGGAA GCCTTCGAGCAGGCGAAGGTGCGTTCGACTGGCCAGCGGACTGTGCCCAGGCCGGAGCCGTGGTCGCCTCCGGCACCGCGGCGCCGAACAACTTGAAGCTGAATCGGCACTAGACTCCGCAACTGCGCTGGTCAACAAGT C [18558] 18727 30 93.3 31 .....................A......G. TGCCGCGGACTGCTCCAACCACTCCCCTGGC 18788 30 93.3 30 .....................A......T. CTCGTCGTGGATAACGACGTGTCGGAGTTG 18848 30 90.0 32 .....................A......GC GATCAAGAAAGCGCCGGAAGTGGAAGGGAAAG 18910 30 90.0 30 ....................CA......A. CCGCGCCATGCGCGACCACGCCAGTTCGGT 18970 30 100.0 31 .............................. AGAAGTCAGGGTTTCCCAGCCCACAACTGAA 19031 30 100.0 30 .............................. CTTCACCCACAGCTTCGCCGTGACGAGAGC 19091 30 93.3 31 ............................GT CAGCAGCCGCAGCAGCGGTACCGACCAGGAC G [19113] 19153 30 100.0 31 .............................. AGGCGCGGCCGCCGAGCTCGCGGAACCGCTC 19214 30 93.3 31 ...............A.............A CCACGCCGCCCACGCGCCAGGGAACGGCGTG 19275 30 96.7 31 .............................T CGTCGCGCGGGAACGTGTCGATCACGCGACC 19336 30 96.7 31 .............................T GCGCTTACGCGTCTTGTGGTCCTGCAAGAAG 19397 30 96.7 31 .............................C CGCTCGGACTGCTGGTCAGCCGCATCCGCAA 19458 30 96.7 31 .............................C GGATCTGCCCGATGATGAAGCTGACCACCGG 19519 30 96.7 31 .............................T GACCGAGGACGTCACGGCGTTCGTGCCTGTC 19580 30 80.0 28 .......................CCCG.GA CCGCGTACACCTCGCTGCCGGTGCGGCT 19638 30 73.3 0 ......G............A.AG..A.TGT | ========== ====== ====== ====== ============================== ============================================================================================================================================ ================== 17 30 91.0 38 GTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACGACCGTGGCGTTGTGAACCACGCCGAACTCACGCTGGGCTCAGCAGTTCTTTCCCTGGCGCAGAGCATCGCAGCTTGGGGGTGGGACGATCCCGGGTCGTTGGGCGGCTCGCCGGTCCTCATCACGGTCACCGTGGCGGACCCTGACGTGACAGCGGACCGCATGGCGCAGCACGGGGCTGAGATCGTGATCCCCGTCGAGAACCGCCCCTATGGCAAGCGACAAGGCAGGGTCAAGGACCCGTTCGGCCACCTCTGGGTCATCAGCGGGGAACCTCGATAAGTCCCGAGGCACCCGGTTACCGGGACGGCGGCAAGGATGCTGTCCCGGGGGTGCGCGCACGTGACGATGGTCGTCCAGGGTGGTCATCTGGCTCCTGCCGGCCAGTTCGGCGCGAAGTCGGGCGTTCTCGACAGTTGAGTGATCAGTTCAAAATGAGTTTGCGCAGGCAGATGATCGAGCGGGGGAGGCTGAGCATGGCTTGGTGGACGTCGGCTC # Right flank : TAAAACACACGTTTGGCTCTGGCTCGTAGTCGGTGGTGACGGCCAGTAGGTGTTCGCGATCATGATCTTGTGATGGCTGTCGATTCCCTTGTGGAGACGGTGTTCTCTGGTCTGTCGGCGTTGGTTATCGAGGACGTGACGGAGAGCGGCGGCATAGTGATGATCACGGCCCGCACTCGGGATGGTGCCGTACCGTGTCCGGTCTGCGGGACTGCGACGGCGAAGGTGCACGGGTATCACCAGCGGACGGTGAAGGATGTGCCGGTCGACGGCCGCGAGGTCGTCGTCCTGCTGCGTATACGGCGGCTGGCCTGCCCGGCTCTGAACTGCCCGCGGCAGACGTTCCGGGAACAGATTCCGGGCCTGCTGGAACGCCACCAGCGTCGCACGGTGCGGCTGGTCCGGCAGATATCCCATGTGGCGCGAGAGTTATGTGGCCGGGCGGCGGCACGCCTGGCCGGCCTGCTCGCTGTGCCCATGTCCCGCAGCACTGCGGTGCG # Questionable array : NO Score: 4.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.60, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 140293-139734 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFR01000015.1 Lentzea xinjiangensis strain CGMCC 4.3525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 140292 37 100.0 35 ..................................... GCGCTTGTGGTGCGCGCTGTCCCAGGCGTCGTCGA 140220 37 100.0 39 ..................................... CAAGACCCGCGGTGTCGCCGAGATGGTCGAGGTGGTGGC 140144 37 100.0 36 ..................................... TTGAGCGGCGCCTTCGACCGGCCCCGCGGGTTGACG 140071 37 100.0 37 ..................................... TTCTCCGGCTTGGCATCGCGCGCCAGGCGCTCGGCGG 139997 37 100.0 38 ..................................... TCTCTGAGGATCGCGTCGATCGCTCGGAGAGAGTCTGC GC [139981] 139920 37 100.0 35 ..................................... GTCGACGCGTTCGCCTCGGAGTACGGCAGGGACGT 139848 37 94.6 38 ...............T....G................ ACCGAGCAGGAGTTCGACCTTCTCGCTGACACATCACC 139773 36 78.4 0 ..............TT....G....C...-.G.T..T | C,CCC [139747,139749] ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 96.6 37 GCAGCGCTGGGCGTCCGCGCCCAGCGAGGATCGCAAC # Left flank : TCCATCAACGACTACCTGCCATGGACGGTCGCCTGATGGAACTGCTGATCACCTACGACGTCGAGACGACCACTCCCGAGGGCCAACGACGCCTCCGGCAGGTCGCCAAGGTGTGCGAGGGCAGAGGGCATCGCGTGCAGAAATCGGTGTTCGAAATCGTTTGCAACCCGGCACAACGACTCCAACTCGAAGCCGACCTGACCAGCATCATCGACACCAGCGCCGACTCCATTCGCATCTATCAGCTCGACCGCGGCACCTTCGCCGCTGCCCGCCATCTCGGCGCCGCCGCGACTCCTCCGCATGAGGGTCCCTTGATCATCTGACCGCGCCCGAGTGTCCGTGGGATGAGGCAGAGTGGCACAGCTGTGGTTAGGAACCACAGGCGTTGTGCGACACGCCGGGAGGTTCCGAAGCGTGAAGGTGGCGTGTCGTGTCCACATCGAGCACGTGCCCTCACTCGAAGGCGTAGATACGATGATTTTCCCTGGTCATCCAGG # Right flank : GGCTTGACTGTGCGACCCGGAACGATCTACTCCCGCGGTCGCAATACGTGGAATGGAACCAGTTGGTCGACCAAATGAAGTTGCGCTCGGCGACCGTCGGCGTAGCTGATCTCGTAGTTGACGACGCCGAGCCAATCGCCTTCAAGGCTGGGAAAGCGGCCATGAACTCGTCCCCGCACCTCGCCGGTCAGATCGAGACCGGTCGCGATGACGTGTCGCTCGGCGCCAGGCCTCCGAGGGAACAACCGGTCGAGGCTGACCGAGACGCCGGTGAGCACGGCTCTCCTGCCATGCACGTCATCGCCGTCCCACTTGGTGAACGGACTATGGAGCGTCATGGCGGCCTGCCGGAGCGACAGCTCGTTGTGCGCGTTGGAGGGCAAGATCGAAGTAGAGCTCCTCGGAAAGTTCCGCGCGAGCAGGAGCGGGGCTCGTGGCGGTCAGCCGCCAGAAGTGATCGGCGCCGTCGGTAGCGCAGGCCAGGCAGCTGATGGTGGCCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGCGTCCGCGCCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.60,-16.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //