Array 1 5726-4540 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIX01000520.1 Streptomyces sp. Ru87 NODE_45_length_34898_cov_66.8913_ID_12739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5725 29 100.0 32 ............................. TACGTCCGGGTGGACGCTCACGCCCGGATGCT 5664 29 100.0 32 ............................. CCGTTCCGGTCCGGGATGTACGACTGGCCGAG 5603 29 100.0 32 ............................. GGAGGACGCGGGCCTTCGGACCGCCGGGGGCG 5542 29 100.0 32 ............................. CCGCAGCCGTCCTCACTATCGCCACCCTCGGC 5481 29 100.0 32 ............................. ACGAGGGCCGCGCCGCCGGGGCGGGTGAGGCG 5420 29 100.0 32 ............................. ATCCTGGCGCTGGCCCGGACCCGGGCGGGCAT 5359 29 100.0 32 ............................. ACCCGGCGGTCCTGGTCCAGCAGATGCGCCCG 5298 29 96.6 32 ............................C TCTGGAAACACCCCCACCCACCACCCACGAAA 5237 29 100.0 32 ............................. CCCCGAGCCCGACGCACCGCACTCACCATCGG 5176 29 100.0 32 ............................. GGGAGCCTGGGCCAGCTCACCCAGGAGGGCGG 5115 29 100.0 32 ............................. CGGGCGGTGCAGGCGCAGTTGCAGGGGCGGGG 5054 29 100.0 32 ............................. AGCGTCAAGGTCAGCACCCTCAACGCGGCGGC 4993 29 100.0 32 ............................. AGGTGTGACCGTGTTGATCTTGTCGCGTCAAA 4932 29 100.0 32 ............................. ACTCAGAACATGCCGACCTTCCCGGAACAGCT 4871 29 96.6 32 ...........A................. GGACAGAAGATCGGCAAGGTCGGCTCCACCGG 4810 29 100.0 32 ............................. CCGAACATCATGGTCGCGGCGGCGGCGGACAG 4749 28 96.6 32 .....................-....... AGGTTCCCGATGCCGCGGGCGACGGGCTCGAC 4689 29 100.0 32 ............................. GCCGGCATCGCGTCCATGATCTCGGCCGGGCG 4628 28 96.6 32 .............-............... TTCGGCGGGTACACCTACTCGGATGATCCGCA 4568 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGCTCCCCGCGCAGGCGGGGGTGAACCG # Left flank : CCTCCTGCCGCGCATCGTCGCCGACATCCAGAACCTCCTGGATCCCGGCTCGGGAGCTTCGGACGATGACGTGGAGGAGGCGACGGAGGAACTGGTCGACCTCTGGGACCCCGAGGCCGGCCGAGTGAGTGGCGGCGTCAACTACGGCAGAGACGAGGGCTGACGTGCCGAACATGACCGTCATAGCGACAACTGCCGTGCCCGACCATGTGCGCGGGGCCATCAGCCGGTGGATGACGGAGACGATGCCGGGGCTCTACGTCGGCACGCTTTCCCGGCGGGTACGCGATGAGCTCTGGCAAGCGGTGTCCGGAACGGTCGGTGCCGGCGCCGCGGTGATGCTCTGCCCGGAAGCGAATGAACAGGGCTACGCGTTGCAAACGGTGGGCGAGAGGAGGCGCGCGCCGGTCGACTTCGACGGACTCACGTTGGTCGCCATGAACCCGGTGGAGATCGATAACGAATCGGTAAAGACGCCATAGAACAGCAGGTCGCGAAGG # Right flank : CTCGGCATCAGCCCGGAACGCCGGTGCTGAAATAGCGCCATGGCCGCCACACCGTCACCCACCCCAGCGTCCGCTTCCACCGGCACGGACGTGGTCATCATCGGAGGCGGCCCGGCCGGCTGCGCAACCGTCAGCGTGGACCAGCGCAGCATCTTGATGGAGCCCGATGCCCTGGCCCACAGCCTCCACCGCGTCCCGGTCCTGAACAACGTCCTCAGCGGCCACAGCAGCGGCCCGGCCCTGGCCATCGCCATCACCGCCGAGTGGCAGCCAAGCAGTGCCGCATCGAACCAGGCCGCCGAGCGGTTGACGTGCGCGCATACGACCACCATGTAGCCGTCACCCTGGACCCGGCACAGTCCTTACCGCCCCGTACGCCGTCATCGCCACTGGCGTCGGCCTCGCTGCAGAACACCGCCTGGGTCACCGCCCCGCCGAACTCTCCCTCCCGCGGCTGTGGCAGGCAGATGCGACCCAAGCGGAAGGCCGCACCCTCCTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15163-17631 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIX01000520.1 Streptomyces sp. Ru87 NODE_45_length_34898_cov_66.8913_ID_12739, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 15163 29 100.0 32 ............................. ACGCATTGATTGGGTTCGTCGAAGCTGAGGGA 15224 29 100.0 32 ............................. CCGAGGTGACCGGCCCCGGCGCACTGGAGGCC 15285 29 100.0 32 ............................. CTGAGTGTGGTGTCGGTGCGGGGCCGTGGTTC 15346 29 100.0 32 ............................. TCGCCGTTCGCGATCGGATTCATCCGGATGTC 15407 29 100.0 32 ............................. TAGCGGACGGCGTCGCTGATGCTGCGGGCGAT 15468 29 100.0 32 ............................. CGGCCGTTCACGATCTGGGGGTTCGGCACGAT 15529 29 100.0 32 ............................. CCGTGCAGGGCGCGATCGACCTCTCCGGCAAA 15590 29 100.0 32 ............................. GCGCTGATGTACGGGGCGGGCACGTGGGGGCA 15651 29 100.0 32 ............................. AACCCCGTGTACATCGCGTAGGCGTTGACCTC 15712 29 100.0 32 ............................. CCGAACAGGCCGGCCAGGGAGTCCGGGCGCCG 15773 29 100.0 32 ............................. GCGGTGTCCTTCGCCGCGCGTGCTCCGGCGAG 15834 29 100.0 32 ............................. GGGCCGGGGGTGGCTGTCCTTGTGGTGAACAC 15895 29 100.0 32 ............................. GCATACGCGGCCACGACGTCCCAGCACTTCAA 15956 29 100.0 32 ............................. GTGTTGACCGGCCCGTCGGTCTGGAGAATCGG 16017 29 100.0 32 ............................. GCTGCCCAGGACGCGGCGACGACAGCCACGGC 16078 29 100.0 32 ............................. GCCGGCCGCCGCCGCTGACCGGCTGCCTGTCC 16139 29 100.0 32 ............................. CTGTTCCGGCCCGTGCACCGCGGCGTGTGGTG 16200 29 100.0 32 ............................. GAGGGCCCCCAGGGCCCGACGACTGCGGCGCA 16261 29 100.0 34 ............................. ACGCGGGGGGGGAGTACGTGACCGGGGACGCCGT 16324 29 100.0 32 ............................. CCACCGGGCACCCCGGCATCACCCAGATCGTG 16385 29 100.0 32 ............................. TAGGAGATCCGTCATGTCGAGCACCTACGGCA 16446 29 96.6 32 ............................T TCAGCCTCCGGTGCCCCGGCCGCTGCCGCGCT 16507 29 96.6 32 ..............C.............. TCCGGGTCGTCGAGGGTGTCGTCGTCCCAGTA 16568 29 100.0 32 ............................. GCGTCGCCGCAGGCGGACACCTTCTCGTCGAC 16629 29 100.0 32 ............................. ATCGTGACGGCGGGGTGCTGCGGGCTGGCCTT 16690 29 100.0 32 ............................. AGGCCGGCACCCGTACCCACCAAGACGTGAGT 16751 29 100.0 32 ............................. TCGTAGCGGGCGTTCATCGCGACGACCGGGAC 16812 29 100.0 30 ............................. CCGCGGTTGGTTGTGCACCGTCTTGTTCAC 16871 29 100.0 32 ............................. CGGCCCCCGAGATCCAGAGGGAGCGTGAAGGA 16932 29 100.0 32 ............................. ACCCACGACTCCGTGACCACCGGCTTCAGTGC 16993 29 100.0 32 ............................. TCGCGCAGGAAGTCGGCCGCGTCGCGCAGGCC 17054 29 100.0 32 ............................. TCGCGCAGGAAGTCGGCCGCGTCGCGCAGGCC 17115 29 100.0 32 ............................. TCGCACGAGCCTTGCGAGAACGACCCGTCGTA 17176 29 100.0 32 ............................. TCGCCGGTGCCCTACTTCAGCGGGAAGCAGCG 17237 29 96.6 32 ............................T TGGTCGCCGGTCCAGAGGCCGTTGTCGTTGAG 17298 29 100.0 32 ............................. CGACCGTGAGCAGCGGAATGCCGGTGGTCATC 17359 29 100.0 32 ............................. GCGCGGCCATGGCGGACGAACAGATTTCCGCG 17420 29 100.0 32 ............................. ATTTACCGGTCGCAGGGCATGAACGCGTGGGA 17481 29 100.0 32 ............................. ATTTACCGGTCGCAGGGCATGAACGCGTGGGA 17542 29 100.0 32 ............................. CCCAACGCACCGGCGATACGGGCGCTTCGTCG 17603 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 41 29 99.8 32 GTGGTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CCGTATCCGGGGTCCCTCTGCACGAGCCCGTGGTACAGCTCCGGAACCTTCACTTGGAAGGGCGGACTGATCTTTCCGATGTCGTGCAGCCCAGCCCAGAAGGACACCAGCTGCCGTAACTCCTGCGGCGCCTTGCCGGTCTCTTCGCAGGCTCTCTCGGCGCCGGGCCCCTCGAACCATACGTCCCACAGCGCACCCGCCATCGCCGCGGTGTCCAGCAGATGGCACACCAACGGATACGGCCGAGGGAGCCCCTCATGCTTGCCCCAAAGGCGACAATCAACCTGCCCAAAGCTCACGCTCGTCCCCCCAGCCCTGACTGTCCGGCCATCAGAGCACGCACCTCTGACAATTGGGCCGATCAGGCGAAAACTCATATCACGAGAGAAGAGAGCCATACAGTGAAACCAGGCGAATTAGGCGCAGCTGTTGACAGGCAGGGTCTTGAGGTGCGACATAACGAAATGGCAAAGGCCGACTAACCTTGCAGGTCGCGAAGG # Right flank : GCTGCCCGCGACATTCCCTTCGACATCGACCGGGCGTGACAGGACGACACCGGTGCCGTGCACGTGGAGGGCGGTTGCGACTGGGTGAGCCGCACAGCGTCACCACCCGCATCCAGCTCGCCACATGAGGAGGCCGTCATGCCTGCCTCCCCGCGGTGCTCCGACTGCGACCAGCTCACCCAGCCCTGCGGCTGCTGCGGCTGCACCAACTGCGGCACCGACTGCGGCCTGGACTTGCTCGAGCAGCCCGTCACCTGGCCAGTCGCCACGCTCGGCAACCTGCCGGTGGACTGCCTGCCGACACTGCCGTACCGGCCGCGTGGGACCGCAGCAGGCTCACCTCGGCCACTGCGGGACCTGTGTGACCGGGTTTCGCCCGCGAGCAGCGCGGCCTCCTCGGCCCCGCCGGAGTGCTCGTCGAGGCCGAACTGACCACAGCGTTCGCCCGCCAGAGACAGCTCGCCACCTCCAACTGACCCACCGATGAAGGGACCATCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54464-54980 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIX01000491.1 Streptomyces sp. Ru87 NODE_5_length_80809_cov_60.572_ID_12659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54464 29 82.8 32 ACCA.......G................. TCGCGGTTCGGCACCGGGATGCGCGCGGAGAT 54525 29 100.0 32 ............................. GCGTTGAGCTTCTCGGGGCGGAGGATCGCCTT 54586 29 100.0 32 ............................. TCCTCCGGGCTCATGGCGTTGCGGATCGCGGT 54647 29 100.0 32 ............................. CGGCTGATGAAGGCGAACCCGCCGGTCATCCG 54708 29 96.6 32 ............................T CGCCCGCTTGGCAGCGGCCTGCGCCTGCTTCG 54769 29 100.0 32 ............................. GACGCCCAGGCCGAACCCAAGGTGCGCGGGCT 54830 29 96.6 32 .................A........... GTCAACTCCTCTACAGGTGGTGGAGGAGGCAA 54891 29 100.0 32 ............................. TTCATCGACGACTGGCAGGGCACGGAGCAGCG 54952 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TTCTATTGGGGTATAGCAATGTGGTACTCAGGAAATCAGTAACAGACGCCCTAGACATGCTGCGACATGCTGAATTTGGCGTCTGGTGACGCCATCGCAGACCTGACGACGGCCGACCGGTACATCGAGATGGCGTCGCGCCCCCGAACCGGCCCTGCTCGATCTAGCCGCGCTCGCGATCTGTGGGGGAGTGAAGCGGTAGGCAGCGGTTGTCAGTGCCGTATGGGGTGGTGCGTTTCAGACCTGCCTATGGGAAGAACCATAAGTACTTCGGACCGTCGTTCGTACATTAATTGTGATGTTGGTTAGCCGTCTGTGATCAGGCCGACGTCGGCCGGACTTCTGTCGGCCAGGTCCGAGCGGTACTGGATCTGTGCAAATCCCCGACGAGCCTGGTTCGCCTGCCCGGTCTCGCCGGGGATCACTCTTTCCGGTGGGGACCATCCCCGCGGGTGCGGGGAGCAGAAATTGGTCGCGGCGTTCGTATCGCGCCAGCAGGG # Right flank : CGGCGTCCGGCCATCACGCCGCCCCTGGGACCTGGGACAGACACCTCTCCCACAGGGCACCGCGCCTTCGTTGCACCCCACAGCCCCAGCCATAAGAGGTTCACCGGAACGCTGAACTGCCGGATACGGCGCGGTCGCCGGTGGGAGTGCCCCGTCTGCGGGTCACGCCAAGGGGCTTGACCCCGCCTTGACCCAGGCTGAGGAGAAGGCTGCGTCGGAAACGACCCGGGTGGCGTGCAGGAATCGGCGCATGAGTGGCAACTCCCGGGGCCCGGCGCCCCGTCGCATGAGGAGCAGGGCCGGTGCTCCCAGTCGGGGAAACCGGGTCGGGAGCGGGCAAGGGGTCTTTGGCTGTTCGCCGGCCGGGCCAGGCCGGCACGGGTGGGTGATCGCGGGGTCGGACGGTTGACGACAGCGCCCAGTGGCGCGGTAGGGCGCGGAACGTCGACCGGATCGGGTGACGGACGAACCGGGCATGGTTGACCCGTCTGCGAGGTGGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //