Array 1 2305285-2308076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033707.1 Yersinia pseudotuberculosis strain FDAARGOS_584 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2305285 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 2305345 28 100.0 32 ............................ AATTATTACTGTTGATAAACTTATCGATACTG 2305405 28 100.0 32 ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 2305465 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 2305525 28 100.0 32 ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 2305585 28 100.0 33 ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 2305646 28 100.0 32 ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 2305706 28 100.0 32 ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 2305766 28 100.0 32 ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 2305826 28 100.0 32 ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 2305886 28 100.0 32 ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 2305946 28 100.0 32 ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 2306006 28 100.0 33 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 2306067 28 100.0 32 ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 2306127 28 100.0 33 ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 2306188 28 100.0 32 ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 2306248 28 100.0 32 ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 2306308 28 100.0 32 ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 2306368 28 100.0 32 ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 2306428 28 100.0 32 ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 2306488 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 2306548 28 100.0 32 ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 2306608 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 2306668 28 100.0 32 ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 2306728 28 96.4 32 .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 2306788 28 100.0 33 ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 2306849 28 100.0 32 ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 2306909 28 100.0 32 ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 2306969 28 100.0 32 ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 2307029 28 100.0 32 ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 2307089 28 100.0 32 ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 2307149 28 100.0 32 ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 2307209 28 100.0 32 ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 2307269 28 100.0 32 ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 2307329 28 100.0 32 ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 2307389 28 100.0 32 ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 2307449 28 100.0 32 ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 2307509 28 100.0 32 ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 2307569 28 100.0 32 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 2307629 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 2307689 28 100.0 32 ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 2307749 28 100.0 32 ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 2307809 28 100.0 32 ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 2307869 28 100.0 32 ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 2307929 28 100.0 32 ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 2307989 28 100.0 32 ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 2308049 27 85.7 0 ...................-A.A.C... | T [2308073] ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGTTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGGCTATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGAATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3242042-3240213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033707.1 Yersinia pseudotuberculosis strain FDAARGOS_584 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3242041 28 100.0 32 ............................ TATGTCGGATAGTAACATCGAGGGGTTCCGAT 3241981 28 100.0 32 ............................ GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 3241921 28 100.0 32 ............................ GCAATATCTTTTAGCTCTAATGTAAATTGCTC 3241861 28 100.0 32 ............................ TCTTGATTGCCTATCGAGCTATCAAGGTCAAA 3241801 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 3241741 28 100.0 32 ............................ GTATCAAGGGGCTGATAGACACGACCCTAAAA 3241681 28 100.0 33 ............................ CGCCACGGTGAAAGAGGCTTACATCAACGCATT 3241620 28 100.0 32 ............................ GCCTCGTCGAGCAGGACATCAACAAACAGCAC 3241560 28 100.0 32 ............................ TTACCGCGCCGCCGCAGAATCTCAGCGTAAAT 3241500 28 100.0 33 ............................ CTAAACCCAATGTCTGATTATATAATCTAACCC 3241439 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 3241379 28 100.0 31 ............................ TTTACGAGGACTATTTCTGTATGTATATTGA 3241320 28 100.0 32 ............................ ATCGAACAAACCAGCTCTGCCGATCATGAAGA 3241260 28 100.0 32 ............................ AGATTATTTAATGAGTGTCGGAAATATGAATC 3241200 28 100.0 32 ............................ GACAAGCTAGATAAACAACCAAATGAAATATC 3241140 28 96.4 32 .................C.......... AATTCAGCCGACCGAGCAAGAACCAAACCAGT 3241080 28 96.4 32 .................C.......... TTCTGCAACAGTTCCAGTAGTCGGCGTAACGG 3241020 28 96.4 32 .................C.......... ATGCTTGCTCCGCCTTCGCTGCGTCCATGACA 3240960 28 96.4 32 .................C.......... AGAATCCGCCGTACACATCACGCTTACTTAAT 3240900 28 96.4 32 .................C.......... ACCATATTCATCCAGCGGGACCGCTGATGTTT 3240840 28 96.4 32 .................C.......... AGAAATGAATCTGGAATTTATCAAATAGATGG 3240780 28 96.4 32 .................C.......... AAAAAAGTTGTCGATATTAATGGAAAAACAAC 3240720 28 96.4 32 .................C.......... AATCGTATACATATCAAACTTATTAACTCCAA 3240660 28 96.4 32 .................C.......... GCACTGCCGGTATTCGAATCAAGGGAGAGGGT 3240600 28 96.4 32 .................C.......... AAGGGATTATTACCAGATACAGGTGAAACCAT 3240540 28 92.9 32 A................C.......... ATTTAACATCATATAAATCAATCACAGATAAC 3240480 28 96.4 32 .................C.......... CTGCAAGTTCCTTAACACTAATCGAATTGAAT 3240420 28 96.4 32 .................C.......... ATTAAAGGTGAGACTGACGGAAAATTAAAAAC 3240360 28 96.4 32 .................C.......... AACTTGAAACCTTCCCAGCAGTGACACTGGAT 3240300 28 92.9 32 A................C.......... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 3240240 27 85.7 0 .................C...CC.-... | T [3240215] ========== ====== ====== ====== ============================ ================================= ================== 31 28 97.6 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGATTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //