Array 1 84852-84420 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIO01000008.1 Paenibacillus xylanexedens strain DE0019 NODE_8_length_216301_cov_19.594795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 84851 32 100.0 35 ................................ ACAACTGTTTTCAGGTTTCCGTTTTCGAGTGAACC 84784 32 100.0 36 ................................ AAATTATCCGACCCCATGTATACGCAGAACACCGTT 84716 32 100.0 33 ................................ TGGTTGAAGTTCAACGCCGCAAAAGCGGGTAAC 84651 32 100.0 36 ................................ TATACGGACTACCGAGTGAAGGAAAGGGATTACCGG 84583 32 100.0 34 ................................ CACGCTTGGTGAAACAATTTACGGTCCTACAGCT 84517 32 100.0 34 ................................ TGGAGGAGGGCTGATCAGATCATGAGGACATTAA 84451 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 35 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : TGGCGGAAATACTTGGAATGGATAACCATTCGTTCAGTTCTGCCAGATGTTTATCCCGATTTTGCTCAAAATATGCTTGTTCTTTCATTGAAAAAGGCCTCCTTCAAATCTGCTTTCAATCTATTGTAATCCATTTTGCCCTGTTAATAAAACATTGGTTAAAAAAATGCTTCCTAATGTTGGGTTCCCATAAAGGGTCAAATATGAGTTGGTGTCTGTCTCAGCGTCCATTGAGATTAGTTTATCCGAGTCTATGTTAGCTAAGACTATTAAAGGTGCTTTTATCGGATTAGAACTGTTTATCCTGAGGTGCGAACCCCAAGCACACATGATTTCCCCGGGAGATTCGCACCAAAATATAGTCCTTTTGTTCCCTTTTGGTATCATATTTGTTGAATTATTTGTTTGCTTTGTATAAGATGAAGGTGAAATCTTGGTTAGAAAGTGCGGAGTTACGGAACATTTTCGTGTTTGAAAATGTTTAAACGTTATTTTTCGCT # Right flank : AATCAACGAGCTTCACGATTATTTCTGTTTTCACAATATTCAACACCCGTAATACCGTTTAAAGCATTTGAACTAAAACATCCCGTTCTTATTTTCTTTTGTGAACAAAAGTGCTCTGACTTTTATGTTAGAGCATTTTTTTTATTTTGTAAGAAGGGGCATATTCGGAGAAAAATTTACCTGTCCCATTATGTACGCAACACTTGATACATGCCAGTGGAGCTACAATAGACATTGTCCAAATACAATCCTTTTGACCTATTTAATTATTGATAGTTCTTTTGACTTATGTATTAATGAAAGAGTAAGATTATTACTTTTATATGGAGGAATATGGTGTTGAAGAGAAGAGAAACATATCCAAAATTCACTACAATTCTTGGCATTTCGTTCTTGGTACTTATTGCGTCAGTACTTATGTTGCCGAGGGTTGCGCTAGCAGCAAACGATCCAGCTTATACTGAGTGGGCTAAGCAACAGGAACATGTGGGATTAAGCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 238454-238756 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIO01000002.1 Paenibacillus xylanexedens strain DE0019 NODE_2_length_701740_cov_20.102280, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 238454 33 100.0 34 ................................. CTTTATCTTTTTGAAGTTTTTCAGCAATTGCCGA 238521 33 97.0 35 ...................A............. CTGCAAGAGCTCAGCGTTCAGGTCGGACACATCTG 238589 33 97.0 35 ....................T............ AAATTCGTAGCAATCGTAGAGGGAATCCTATTAGC 238657 33 93.9 34 ..............A....A............. TCACCAGCCGCGTCATTATCCGTCCCGATCACGA 238724 33 81.8 0 ....TG...T..T.A............C..... | ========== ====== ====== ====== ================================= =================================== ================== 5 33 93.9 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : CGCTCTGATGATGCAGCCGGATATCCTTCTTTTTGATGAGCCGACTTCGGCTCTCGACCCGGAGCTAACGGGAGAAGTACTTCGCGTCATCAAGCAATTGGCACAGGAAAACATGACGATGATGATTGTCACGCATGAGATGAGCTTTGCTCGCGATGTTGCGGATCGTGTCTTCTTCATGGACAATGGCGAAATTGCCGAGCAAGGCCCGCCAGATCAACTCTTTGGTTCGCCAAAGCTCGCACGTACCCAGACGTTTTTGAAACGGGTGGATATGGAAGAGTAACGGTGGAGCGTGATTTAAAACAGGTGCGAATGCCAAGCTCCCATGAAATCCCTGGGGGATTCGCACCTGACCATAGGCTAATTTGAACCCTTTTGGCAAATTACCTTGAATATTTTAGGTTTTTTATATTAAGATGAAACTGATTAGTAGATGAATTAAACGAGAACACGTAATAAAGTATACAATCTATGCTTTTATTACGTGTTTTTTTGCT # Right flank : TAGGATATGGAACTTTAGATATCATGTCTGATTTTCCCGGCTTCGCTTACACCTAACACGCTAACGATCACACAGGAGCTTATTTTGCGATTTCAGCGACCATTGAAAATCTAACGATCACCACAAGCGCTATTTGGGCTCAAATCCTCAAAATGTAGCGTGAATCGCTGTATTTCAAGTAAATAAGGTTTCTGGTGATCGTTAGAATTTTAAAATGGCTGAAAAGGGTTAAATAGGGTCTCTGGTGATCGTTAGAATTCGGGAAGCCGGAGATCGTCCACAGTAGGGGGAATCTGGTATCTGGTAAACCGGAGATCGCCCATACTAGTGTTCATTTAGAACGAAAGTTTTCCAAAAAAAATATAGGTGGGAGAAACCTCCAGTTCATATACTCTACCCGAGAGACACGCTTCACCATTTTTGATAAAACTTTGAGCCGGTTGGTTCATGCAGTCTTTAGTGTTATAGTTTTGACTGCGGGTGTATTTTACATAACATAT # Questionable array : NO Score: 6.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 243257-243492 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIO01000002.1 Paenibacillus xylanexedens strain DE0019 NODE_2_length_701740_cov_20.102280, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 243257 33 100.0 35 ................................. TCCCGGGTCCTTTTGTCATTGAGGTGACGATATGA 243325 33 100.0 35 ................................. CTTTTCCATATTCTCAGCTGCAGCTACGCTTGGTA 243393 33 81.8 34 ..A..................A......A.GTA CGAAGAATCTCGGCAATTTCCAAATTGTGAAAGT 243460 33 90.9 0 ...A................T.......A.... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 93.2 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : AAATGGTGAAGCTGGTTGAAGCACAGGTTGAAGCAAGTTGAAACAATTATGACTGGTTTTTAAAAGGATGAACCTAACCTTTCGATTGACCAGTTTACCATTTTGGTCAGTTGGTCGTTATTTAATGTAGCACTTGTGTATGAGGATGGATGTGATCTATGTCATAGTTTGGAAAGTGAACGTTGTGATGGTGGGGTGGGGAGAAGTTGGAGGAGTAGGGAAAGGGGGAGACTTGAAAAGGATAGTAGGAGTGGGAGGTACATAGAAACGTAGGAAGATTAAGTAGAGAGTAGAAAGTGATTTATGCGGTGTGAATGTGAAGCTCACATGAAAACCCCGGGGGATTCGCACCTTGAAAGTAGTGAAAACAGGGCATTTTGATACCTTTTGGCATCATTGAGCTGGAAAAAGATTGAATTCGTTGGCGGGAACACATAGAATAGTAGTGTAAAAACGTAGTTTTGTGACGTATAGGTATGTACTATACGTGTTTTTTCGCT # Right flank : TCATAGAGGGTAGTCGGTATCAAAATGAGCAATCGGCTACTCACTCTGAGCAATCAATCGGAATTTGATAAAAGATCCAAAACTAACGACAAGGTAAAAGTATTCCCTCATTGGTTAGCTGCTACCATTGTTCACAAGCAATTTGAAGTGGATCAAGATGATGCGCGTACCGATGAAGCTAGACGTGAAGAGGAGAGATTTCAACGGAGATTAAGCGTTACAAAAATATTAGTCAGCAGAAAGCTCAACTCAATTTCCTCTAGTATAATTAAACTGGTTAGTCATGCTACCAATAGATTCGGAGTTTCGAAGATTAGAAGTTTGGAAGATGTTATCCATATATCAACCGATGAGGAGTGTCAGGACATGTCCATACATCACATAGGTCACAAGGTTACTTTTGCCGATATCAAAACGAGGTTGCCTCACGAGAGCTGGATGTATACACAGAATGAAGCACATGATGGTGAATTTGATGCCGAGGAAGTATGGCTGCATTC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 101578-101813 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEIO01000005.1 Paenibacillus xylanexedens strain DE0019 NODE_5_length_265679_cov_22.714494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 101578 33 100.0 34 ................................. GATTGAATCTTGTAATCCGAATTGTGGTGTTCGT 101645 33 100.0 33 ................................. TTATTATGCTTCGCATCAAGACGCGCGTTGTAA 101711 33 100.0 35 ................................. TTCGTATCATCTTGATATACATCATAGTACGTAGC 101779 33 81.8 0 ............GG.....AT..AC........ | T,A [101797,101803] ========== ====== ====== ====== ================================= =================================== ================== 4 33 95.5 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GTTAGTTAGTGGCGTGGCTGTATCGCTTTAGAAGTTCTAACGATCTCACAGAACCTTATTTTGCGCTTTTTGCGGTGTGTACAAATCTAACGATCACCAGAAGCGCTATTTGTGCGAAAACCTGCAAAACTGGGCTAAAAACGTGGCTTTTCAAGTAAATAAGCTCCCTGGTGATCGTTAGAATTTCAAAGTAATCAAAAAGGGGCAAATAGCGTCGCTGGTGATCGTTAGAATTCGTGGAGTCCCATTTGGCACTTGATGATTGTTTGATGTATGAATGTAGTGTGTTTACTGAAGGAGATTTCGTGGTGCGAACCCCAAGCTCACATGATTTCCCTGGGAGATTCGCACCAGTATTTTGATGTTTTCGTGACCTTTTGGCAACAGTTTGTGATCAAATTGGAGTGTTCTGGAAGTCAATGGTAAGGTTGATTGATATAATATGAAGAAGATACGTCATGCGAATTAGATGTTACAACTTTACTGCGTCTTTTTTCGCT # Right flank : TCGTATCCAGCTACTGGATATCATTCTTAGTTGCATATACCCTTTCCCCTAAGGGAGCACGTAGAATAAGGTATGTTACAATACTATGAATGCCAGCATTTCTATCAAATAGAATGAGGTGAGCTCTATGCGATGTAATGGGATTATGGAGTATATTTTTGATAATGAGTAAATTCAATCAAGTGTTGCTGATGTTTTTGATCCCGATGCCCTTCACTATTATCAATTTTAGTTCATATCTAAAGGGGTATTCCCCTAACATCGTTCAATTCGTAGCGTCTTTGTTATTCCTTCTTGTATGGTTTGCTCTAGGCATGAAGAGCAGGGGGAACGAGTTTGTACTGCGATCCACGCTGTTTTGGTTAACGGGGGCGGTCTTGCTTCTTGTTGGGTTTTATCTGGACTTAGCCATACTCTTTATACCTGCGTCCATCGTTTGGGCGGGGCCTGCTTATGGAATCAGGTACGTTCTAAATCTTCCGTCGGATGTGATGTTCGCC # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //