Array 1 117561-116935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCL01000007.1 Bacillus pumilus strain B4127 NODE_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 117560 32 100.0 34 ................................ GTATATACTGTATTTGGAGGTGGCGCACATGTGG 117494 32 100.0 33 ................................ AAATAGGTTCCTCATTGCTTTCATGCTAGTCTG 117429 32 100.0 33 ................................ TGTAGCACATTATCATTCGGCAACCCATAAATT 117364 32 100.0 34 ................................ ATGAAAACGAAATGTTTGATGAAAAGGGTGTGTT 117298 32 100.0 35 ................................ TAGCCTGAAAATACCAAATGCGAAGCTATTAAGTT 117231 32 100.0 35 ................................ AACAAGGTTAGGGAATGTTGCTGCTAACTGTTGTG 117164 32 100.0 33 ................................ TTCAAGACGTTTGATGTAAGCACGTATATAATC 117099 32 100.0 34 ................................ AATCATTGTGTCGTTTATATCTTTTGTCAGGAAC 117033 32 93.8 34 ..............A.....A........... AACCACGGTTTCCCAACCGTTGTCACCATCGACA 116967 32 93.8 0 ....................A..........T | G [116938] ========== ====== ====== ====== ================================ =================================== ================== 10 32 98.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Left flank : CCATTTCTTTGGAAGTAGGTGATGTTTTTTATGATGGTTGTAGTTACATATGATGTCAGTACAATTGATAGAGATGGGCAACGGAGACTAAGAAAAATATCGAAAATTTGTCAAAACTATGGTCAAAGAGTACAACATTCTGTATTTGAATGTATTGTAGATTCAACGGAATTTGCTATATTGAAGAATCAGTTGTTGCAAGCTATTAATGAAGAAAAAGATAGTATTCGATTTTACCAAATTGGTAACCAATATCGAAAAAAAGTAGAACAGGTTGGTGCAAAGGAAACAATTTTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAAATTCCCTGAAGCATTCGCACCTAAAAAGAAAGATTTTTCGACAAACACTATCACTTTGTGCCTCAATAATTTATACTTTTTATAAAAAGAAGAGTCTTTTTTATCTGATTTTCATAAAAAAAGCTGTTTTATTTGTTTTTTTTACTGAAAATCGCA # Right flank : TAATGGTTTCTTTGACATGATCATCATTCAACAGTCGCATTCTAAAGGGACTGACCCCATGAGATGAGACAAATAAAAAACACCTTCAAGTTTGCAAATGGATCATTGTGATCCGAAATTAAACATGGAGGTGTTTTTTCTATGAGGACAAGAGTGAGTTATCCGGTTGAAGTCAAACAGAAGGTTGTAGAAATGAGATTGGCAGGCGTGCCTATGAAAGAGATCATACAGAAATTGAATATCAAGAATAAGACGCAGGTTCAGACATGGATGAGGTGGCATAAGGCTAGGGAAACACACCGGTTTGAACAGCCTGTTGGAAAATAACATACCTATGGAAAAGGTCCCGGGTACTCTTCAGAATTAGAGAGAATGCAGGTGGGACGATATCTGAGTCAACAAGTTGTGGCCTCAAATATGCTGAAGAATGCAGTTTTGTTTCCTTATCCATGATCAAGTATTCAGATTACAGTATAATGAATGGATTGAAATAACAGTTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 126038-125808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCL01000007.1 Bacillus pumilus strain B4127 NODE_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 126037 32 100.0 35 ................................ ATGTGTACAGGTACGCATAGTTCAGGTAAATTCGC 125970 32 100.0 33 ................................ CAACCACTCCATACGTTATTGTTAAGGTAATTT 125905 32 100.0 34 ................................ CTAGTAAATATCATCAATCTCAAAGATGAATTCA 125839 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Left flank : GGTTCACACCGACTCACTTTAGACCGCCATATGGAGGGACAAACGGGCAAATTAACGCGGCTGTCAACATGAAAGTCACGCTTTGGGACGTAGATCCTGAAGACTGGAAATATCGCAACAGCCAGTACGTCGCGAGCTACATTCTCACACATGCGTCTAGCGGAGAAACCGTCTTAATGCACGACATCTATGACACCTCGGCAAATGCAGCTGTCACGATTATCAAGGAATTAACCAAACAAGGATATCAATTATTAACAGTTTCAGAGCTTGAGCAGTGGAAGGAAGCGCGGGCGAAGAAAATCAAACATAATAAATGATCATAAATATGGTGCGAACCCTAGGTGAACATAAAAAGCCTAGAGGATTCGCACCATTATTTTCGACAAAAAACATTCATAATTTTACAATTTATTTATTTTTTCATTAGAAATCATAAATTTAAAAAGAATAATATATAAAATAATGAATAAAATGGTATAATTTACATTGAATAAGCA # Right flank : ACCTTTATTATTCCTCTTTCCACACGAATCTTTGTCGCACTCTACAGTTCAAGTGTTTTTAAACGGTCTTATACAGAAGCAGAAGCGTAAAAATCAATCAAGGAGTTAAGTATGAACTATATCGCACATGTGAGAAAAGAAGACGGCGCTATTCAAACCGTTTCCGATCATTTATTAGAAGTGAAGGCATTATGTGAGAGGTTTGGAGATAAGCTAGGGATTCGCCATATAGCTGGATTGGCAGGAGTCCTGCACGATTTAGGGAAATACTCCAAGGAGTTTCAGGATTATATTCGTGAAGCAGTTGATTCTCCTGATCACCCTCCGCAGAGAGGACGTGTCGATCATTCAACCGCAGGGGGGCGAATGTTGTACAACATGTTTCATGGTCCACCACACAATCGCTATTATACTCTTTTGGTGGAAATTGTATCTAACTCAGTGATTTCTCATCATTCGGATTTGCAAGATTTTTTAAATCAAAAGGCAGACTCGCCTTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18910-18215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCL01000010.1 Bacillus pumilus strain B4127 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18909 32 100.0 33 ................................ CCTGGTAAAGAATCCACAAATTCAATGAACTCT 18844 32 100.0 34 ................................ CATTCATAATCAACACATGCTGCGTGAACTCCCA 18778 32 100.0 35 ................................ TCCTCGTCATCCATTTCCGCACTATATAACCAAAT 18711 32 100.0 35 ................................ AATTTGAAAAAGACAAGGAAGCCGTAAAGAGTTAC 18644 32 100.0 34 ................................ TTAGTGTAATAACGATGACAGTCTTTCCATCCAA 18578 32 100.0 35 ................................ GTTTTTTGGCGTCTCAACCGTTGGTGCATCGGCGT 18511 32 100.0 35 ................................ TGGAATAGTCGTAAGTGAAACAAACGGATACCTGT 18444 32 100.0 33 ................................ TGCGCTTTACCTAAGTGGCCGAGTTTTTCGTTT 18379 32 100.0 34 ................................ GATGTTCCTGATCATTGTTCTAGCTCCTTTGTTT 18313 32 96.9 35 ............C................... GCCTTCCGAGTTTGTCGGGCTCGCTCATCATCAAC 18246 32 78.1 0 ............C.......A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATCTCACAATCAACAAAGGATGCTTTACATGGTCGCACTCTACATGAGTGCGTGGATTGAAATAATGGCTTTTTGACCCGGATCATCGTCCGGAGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTATAACGGTAAAGGTTGACGCACCATATAACACGTCGCACTCTACATTAGTGGATGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTAAATAAATAGATTTCAAACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGAGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : GTCTTTGTTTTATACAAATTCAACTACCTATCCAGTTCAAAATCTACACAAAATGAATAATCAATAATGTACTTCCCCCCCTAAATCCAAGCTCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19445-19215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCL01000010.1 Bacillus pumilus strain B4127 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 19444 32 100.0 34 ................................ TTCATCTCACAATCAACAAAGGATGCTTTACATG 19378 32 100.0 34 ................................ AATGGCTTTTTGACCCGGATCATCGTCCGGAGCA 19312 32 100.0 33 ................................ TATAACGGTAAAGGTTGACGCACCATATAACAC 19247 32 87.5 0 ..............T....GA......A.... | T [19218] ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCGTGGATTGAAATCCTCTCCTATTGCTTCGAAGTCTAGGTATCTGTTGTCGCACTCTACATGAGTGCGTGGATTGAAATAAATAGGTAGCTGTCACTCTCTTTTAGAGCGGTTAAGTCGCACTCTATATGAGTGCGTGGATTGAAATATTGATTCTCTATGTTCTGGTATTTCAATGGCGTCGCACTCTACATGAGTGTGTAGATTAATAATTACGAAAAACATAACTTTGCCTCTCAGTAGTCATGTACTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTAAATAAATAGATTTCAAACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGAGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCCTGGTAAAGAATCCACAAATTCAATGAACTCTGTCGCACTCTACATGAGTGCGTGGATTGAAATCATTCATAATCAACACATGCTGCGTGAACTCCCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCCTCGTCATCCATTTCCGCACTATATAACCA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 20228-19732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCL01000010.1 Bacillus pumilus strain B4127 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20227 32 100.0 33 ................................ AATCCAGCTTTAATTAGATAATTAACTCTTCTA 20162 32 100.0 35 ................................ CGACCAAATCTATACAGGTCATGAACCACAAGCAC 20095 32 100.0 35 ................................ TTTCTCTATCTTCTTAAAGGTTTTCCAGTCATAAC 20028 32 100.0 34 ................................ AGTTAGGTTCAAACTATGTAAGAACGTTACCAGT 19962 32 100.0 34 ................................ CCTCTCCTATTGCTTCGAAGTCTAGGTATCTGTT 19896 32 100.0 36 ................................ AAATAGGTAGCTGTCACTCTCTTTTAGAGCGGTTAA 19828 32 96.9 32 ...........T.................... ATTGATTCTCTATGTTCTGGTATTTCAATGGC 19764 32 90.6 0 ...................T..A....A.... | T [19735] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACGGTAGGAGAAGCATTCAAAGTAGATGTCATGACCCCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATAAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCGGGTTATGGAAGGCTTAAAATGGACCACGTCATTTCGTAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTTAAAACAAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TACGAAAAACATAACTTTGCCTCTCAGTAGTCATGTACTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTCATCTCACAATCAACAAAGGATGCTTTACATGGTCGCACTCTACATGAGTGCGTGGATTGAAATAATGGCTTTTTGACCCGGATCATCGTCCGGAGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTATAACGGTAAAGGTTGACGCACCATATAACACGTCGCACTCTACATTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 29084-28530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCL01000010.1 Bacillus pumilus strain B4127 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 29083 32 100.0 33 ................................ GAATCAACAATTGCCTATGCAATGAGTGTTAAC 29018 32 100.0 33 ................................ CCCTCATAGAGACTGACGTCTATTTTCGCTGTG 28953 32 100.0 34 ................................ ACAATTTCTGAGACAAATAATCTCTGATACAAAA 28887 32 100.0 34 ................................ ATAACAATGTCTTCAGGAATTACAAACCTTTTAC 28821 32 100.0 32 ................................ CTCATCAAGATTTTTACCGAGTAGATTTTCAC 28757 32 100.0 34 ................................ AAGCTGAACAGGCTGAAGGTATAGATAAATCAAA 28691 32 100.0 33 ................................ CAAAATAATCTCTCCTTAAATGGTTGTTTTAAT 28626 32 96.9 33 ...................T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 28561 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ ================================== ================== 9 32 97.6 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCGGCTAGGCGAAACGAGACAAAACATCTCAAACATTCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATACGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATTCCTGGAACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGCATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTTCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTAAAATCTCCGATGTTGTAGATGCTGAACGTTTTGTCGCACTCTACATGAGTGCATGGATTGAAATTCCACAGCTTATACACAGCCTCGTAACGTGTATGTCGCGCTCTACACGAGTGCGTGGATTGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //