Array 1 1041555-1038984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFB010000002.1 Bifidobacterium pseudocatenulatum strain YIT12053 YIT12053_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1041554 36 100.0 37 .................................... CTAGGCATCGACAATTCGACCACGGAAAAAAAGGAGA 1041481 36 100.0 36 .................................... CCATGGTCACCGTCCTAAAAATAATGGAGAGAGTTG 1041409 36 100.0 39 .................................... GACGTCAAGGTGGCAATGGGGCTCCTGAGTGCTACCACA 1041334 36 100.0 37 .................................... ACATCCAGCACGCCGATTGGGACGACCCTTTGAAGCT 1041261 36 100.0 36 .................................... ATCCTCGGAGACATCAGTTCCGGTGGTACGTGGAGC 1041189 36 100.0 38 .................................... TCGGTGGCGTATCCAAAATCGTTAATCGTCAAATCAAT 1041115 36 100.0 39 .................................... TCAGCCAGCTTTCGCCAGCGGTATCGGCTTTATTCGTCA 1041040 36 100.0 34 .................................... AATATGCTTTGTCTTTCGAGCGTTGACTTTCGAC 1040970 36 100.0 38 .................................... TGATAGCCATGATGCTGATATATCGTCATTTCGGCGCG 1040896 36 100.0 35 .................................... TTCAATTTCGTTAACGTGTAATATGCATTCATCCG 1040825 36 100.0 37 .................................... CGGTTGTCGGCGCTTGGTTTGGCGGCTGGAAGACGGG 1040752 36 100.0 36 .................................... TTGTTGTGGACTTGGCCGTTGGCGTCGGGGATGACG 1040680 36 100.0 35 .................................... ATTGACATGACCGACGAGCACAAGTATCTGCTTGG 1040609 36 100.0 40 .................................... GCCGACTATGCCATACGTAACAAATTTCGCGATGAATCGG 1040533 36 100.0 37 .................................... GTGACCTTGCAATCCAATATGCTTTTCGCACGAAAAA 1040460 36 100.0 37 .................................... CATTACGCGATGGGGCATGACGCTAACGCGGAAGCTG 1040387 36 100.0 35 .................................... TTTTACCCAATGGATTGACCAGACCAAAAACCGTT 1040316 36 100.0 37 .................................... GCGGACCTGTGGGGCACGGTATTCGGCCGGTCGGTCG 1040243 36 100.0 38 .................................... CTATTGGAAACTGCACGAGTTGTATGTAAGGTCGAGCA 1040169 36 100.0 36 .................................... GTAGCACTCGCGCCAGCCGACAAATCAGCATGGTAC 1040097 36 100.0 35 .................................... ACGGACGATACGCCAATGGACTTGCGAGATGGCTA 1040026 36 100.0 34 .................................... GCGTAGATCCTTGCGGCCACGGCCTCGTACTGTT 1039956 36 100.0 37 .................................... GTGGCGTTTTCGGTGGCGTCAAGTCAGTCGCGTCCGA 1039883 36 100.0 37 .................................... CGTCCACGCGACATGTAGGATGGCCATTCGTTATCCC 1039810 36 100.0 35 .................................... TTATATCGTGACGCTTGCGCGAAAGGTACCGGCAA 1039739 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 1039666 36 100.0 34 .................................... GGAGGATCATGCGGGCTTGGCCGATCAGGTCGTT 1039596 36 100.0 36 .................................... AGAGCGGTAATGCGAGGTGTTGTGTTGTATTGTATT 1039524 36 100.0 35 .................................... AACAAGAAATCAGGCGGAATGGAAGCCACGTTCAT 1039453 36 97.2 36 ........................A........... CTGCCCGTGCCTGTTTGGGTCAACGCGTATGCGCGA 1039381 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 1039308 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 1039236 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG 1039164 36 100.0 37 .................................... GGGGACAATGACCCCGCTGATTTGAGAGACGGGTATA 1039091 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 1039019 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================== ================== 36 36 99.8 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATACGGGCGCGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATTGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //