Array 1 2730462-2729432 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP025222.1 Listeria monocytogenes strain ATCC 51775 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   2730461	    36	 100.0	    30	....................................	ATTTTTTCATTCCAAACTCCTTCCACAAAC 	
   2730395	    36	 100.0	    30	....................................	CTTAATAGCGGATTGATTGGTAGCGATGTA 	
   2730329	    36	 100.0	    30	....................................	TGACCTTTTGTTTTCATTTCCGAGTCAATA 	
   2730263	    36	 100.0	    30	....................................	ATAATGTCGACACGTCCGATAGATCGAATA 	
   2730197	    36	 100.0	    30	....................................	CAATATTGGTAATAACTATGGCATTCCCAT 	
   2730131	    36	 100.0	    30	....................................	AAAAGTACTAAAGTCACCAAAATAGAAAAC 	
   2730065	    36	 100.0	    30	....................................	GAACACTATCTCGATATTCATAATATATGA 	
   2729999	    36	 100.0	    30	....................................	TAATTATTGATGAATTCCCGGTCAATTGTT 	
   2729933	    36	 100.0	    30	....................................	TCCGCACCTTCAATTTAATTTTAAAGGTTA 	
   2729867	    36	 100.0	    31	....................................	TGCTAGGTTACTCAGAAGCTTACACATTCGA	
   2729800	    36	 100.0	    30	....................................	ATTTCTGCTTGGATTGATTGCGGATTTTCT 	
   2729734	    36	 100.0	    30	....................................	GTAAGTAAAACCGGACGACTCGATGTGTCG 	
   2729668	    36	 100.0	    30	....................................	AAAAGGGGTGTGCTTGAAATGGGTGTCTCC 	
   2729602	    36	 100.0	    30	....................................	AAAATCGGCGATACCCTAACCTACTTCGGT 	
   2729536	    36	 100.0	    30	....................................	AGACAAAAAAGGCGAGGTACATTGGACGAA 	
   2729470	    36	  86.1	     0	.............A.....C.....A.A.......G	|                              	C,A,T [2729435,2729438,2729443]
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.1	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   ACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATCCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAGG
# Right flank :  ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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