Array 1 2728486-2729188 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP060286.1 Caproicibacter fermentans strain 7D4C2 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
   2728486	    33	 100.0	    34	.................................	TTTAAAGGGGGTAAATTATGATTGCAAAAGTAAA  	
   2728553	    33	 100.0	    33	.................................	ATTAATAAGTGTAGCTAAAATCCAGTACATTTC   	
   2728619	    33	 100.0	    36	.................................	GCGTGATGAAACGCGCGCCGACAAATTCGGAAATTG	
   2728688	    33	 100.0	    34	.................................	TCCTTCCCATAGCGCCTCCATCTTTGCGATTTCG  	
   2728755	    33	 100.0	    33	.................................	CCCACCGTTTTTGATTCAGCCACGTCGACGGAT   	
   2728821	    33	 100.0	    33	.................................	ATCTGAAAGAATACGATGCGCTTTATCGCGAGT   	
   2728887	    33	 100.0	    34	.................................	CGCAACCCTCCGATATTGATAAATTAACATCTGA  	
   2728954	    33	 100.0	    34	.................................	GGTGAAAATGATGGTGGTTATGGCGTTTTGGCTT  	
   2729021	    33	 100.0	    35	.................................	GGTATTAAGAATCTGCGGAGAATATATGACAAATG 	
   2729089	    33	 100.0	    34	.................................	TTCAATGAAAATCCTGGGTCAAAAGTATCAAGGA  	
   2729156	    33	 100.0	     0	.................................	|                                   	
==========	======	======	======	=================================	====================================	==================
        11	    33	 100.0	    34	GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   TGGCCAAATATATTCGGGGTGAAATCGAGACTTATCCAAATCTTGTCTGGGGGTAGAATATGTTTGTCATTGTCGCCTATGACGTGAACATCACTTCCGAAAAAGGCAAAACACGGCTGCGAAAAGTCGCAAAAGAATGTGTCAATTACGGTCAGAGGGTACAAAATTCGGTGTTTGAGGTTAATCTCGACTACGGCAAATTTTTACAGATGAAAGACCGTCTTATCAAGCTGATTGACCCTGATAAGGACAGCCTGCGTTTTTATTATTTGGGGGATAACTGGAAAAAGCGTGTTGAGCATATCGGTGTGAAACCGGGATATGACAGCGAGGGGGTGTTGATTTTCTGAGTGCGAACGTGCGGTGACTGCAAAAATACCGTGCGGTTCGCGGATTAAATTTTGTCCGTCTCCATAAAGGAATCTTCATAGCAGATAGATTACTTGTTATTGTTGTCCGCCCCGTATGCGGAATGCAACTCCATATGCACAATATATAGA
# Right flank :  TGCAAGAATCCGCAACGAAAAAGAAAAAAGCGGCCCGCATGTTCATTTAGCCGTCTTCGAACCGGGATAAGATGGTTTATGTATGATGAAACAGTCTTACAGCAATTCCAGTTGCATTGTAGAATTTTCTTATGTCCATATTTGCAATCTAAGTTCGGAAAAGCTTTAGGATGCATGCTGTCACAGATGATGCTCTTCTGTTCAGCCAACGGGGTCAATCACGATTTTTCCGTCCGCTTCAATCGGAACGGCGCCCGCGTCCCGCAGGACAACAGCGACAGCGGCGTCCAGCCGCGACGGGAGCTCCGGCCATTTCAGGGAAGCCTTGAATTTTACGGATTCATTATCGGATTTGAGCAGTTCTTTCACGATTTCCCCAATGGTTGCCCGGCCGACCCGGCGATGCGCGGCAAGAATCTCTTTTTTCATCTCTTTATAGTACGTGCAGAAGAAGTCAAAGAAGGCCTCGCTGTCCGCACTGTTGGCGGTGTACATTTCCA

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.20,-3.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.37,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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