Array 1 107010-109033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR590477.1 Neisseria lactamica strain NCTC10617 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 107010 32 100.0 35 ................................ CAGAAAAAAGAGAAATAATCAATAACATTTTCAAG 107077 32 100.0 35 ................................ AGTAGTAGAGCTGCCAAATGCGTTGCCTTGGGAGC 107144 32 100.0 34 ................................ TTAGGGACGAAATATATAAGATACTACTTTAATT 107210 32 100.0 35 ................................ AATTTTAGCCGCCCCGCAAACCTAGAGGAGCAAGC 107277 32 100.0 34 ................................ TATAGATTGGTTGTCATTCACGATGCACGAAGAT 107343 32 100.0 35 ................................ CGCCAGCAGTTCGGTGGCGCGTTGCTCAATACGGG 107410 32 100.0 34 ................................ CCGCCACAAATACCACCACCGCCTCGCTGCCCAC 107476 32 100.0 34 ................................ AACGAAATCAACAATTATCTCGGCGGCTTTGGTA 107542 32 100.0 34 ................................ TTTGCCAGTCAAACAATGTTGGCAGTGGTGGGCG 107608 32 100.0 34 ................................ CGGCGCGGGAATGGGTGCCGGGCGGAAATATTTG 107674 32 100.0 35 ................................ GTATTGAAGAAACCGGTTACAGATACGCAGCAAAC 107741 32 100.0 34 ................................ CATGAAAAAACCTTTTTCGATAAATACGGCGTTC 107807 32 100.0 35 ................................ TAGCACTAGAAGTTGATTTAAGCGTCTTTAAAGGC 107874 32 100.0 35 ................................ GATACGGGGGCGGTAGTCGTCCTCTGTTAAATAGG 107941 32 100.0 34 ................................ AGCGCAGCCGTAGTCAACGCAGCGGCAGCCAAGG 108007 32 100.0 34 ................................ ATCAAGCCCTATATCCAAGAAACAATAAACCACT 108073 32 100.0 34 ................................ ACACATGCAAAGCAGCTTGTAGCCTATCTAGGAC 108139 32 100.0 35 ................................ AAAAAACCATACCGACCCCCACGGCGCAGCAGGAA 108206 32 100.0 34 ................................ AGTTGACGGCGTATGCCCCGAACCTAAAAGCGTA 108272 32 100.0 35 ................................ CTTGTCTTAATAGTAACAACTGCATTGAGACCGTA 108339 32 100.0 35 ................................ TTTTTGAACAACGTTTTAAAAACAACAGAGCAGGA 108406 32 100.0 34 ................................ CGTCTTCGCCGCGCTGAAAAACGCTTATTTCGCC 108472 32 100.0 35 ................................ CATAATCGGCGGTTTTGTTCGATGCTCCGCTTGGA 108539 32 100.0 34 ................................ GTTCCGTGGTCGGCAATCTGTCCCTGATTGTAGA 108605 32 100.0 34 ................................ GTCCCATTTATAGTCGGAATTTGTCCTATCATAG 108671 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 108737 32 100.0 34 ................................ AACAAAACCAACCAACGAGTGTGCGGCATATCGG 108803 32 100.0 35 ................................ AAAATAACCTTTGAAAGGCAGAAACATGAACAAGC 108870 32 100.0 34 ................................ AGACGCACGCCCGAAGCATCAACGGCTTGGAGGC 108936 32 100.0 34 ................................ CGACAGACGGGGAAGCACCGCCCCCCAGTGTCCC 109002 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 31 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGAGGACGACATCCGCTTCCTGCGGGAACTGGGTTTGTAAACCTTTAAAGGACAATCTGATTCCCCTACGGCTTCAAACCCTGTCGGGGCCGACGCAAAAATGCCGTCTGAACTTGGTTTTAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGAGCAAACCCCGGCAGGTTTCAAACCGTCCAATCCTGCGGATAAGCCCGCTCCGGCTCCTGCCAAACCTTCTAAAGAAACCACGCCGGTCAACCAGCCCGCCGTTGGTGCGGCAATGCGGCTGCCAAGGCGGAATATCGCTTCCTATAAAAAAGACGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2020298-2019073 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR590477.1 Neisseria lactamica strain NCTC10617 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2020297 36 100.0 30 .................................... TCGTTGTCGGTGCTGATTAAAGTGATTTTG 2020231 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 2020165 36 100.0 30 .................................... TCGGGATTGACATTATAGAAAATAAACATG 2020099 36 100.0 30 .................................... CGAACTTCATTGATGTTGCGTGCGATAACA 2020033 36 100.0 30 .................................... CAGGGAAAACGCGCGCTCTTGATATGGCGG 2019967 36 100.0 30 .................................... GTAGGGAGTAACGAGCCTGATGAAGTAGGT 2019901 36 100.0 30 .................................... CCCTGACGCTCAATTTTCCCTGCCATACAG 2019835 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 2019769 36 100.0 30 .................................... AGTGTCAGCAGCAGCTTGTTCCCCTGTACA 2019703 36 100.0 30 .................................... GTAGGGAGTAACGAGCCTGATGAAGTAGGT 2019637 36 100.0 30 .................................... CCCTGACGCTCAATTTTCCCTGCCATACAG 2019571 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 2019505 36 100.0 30 .................................... AGTGTCAGCAGCAGCTTGTTCCCCTGTACA 2019439 36 100.0 30 .................................... CCGGGCAAGGAAAAAGCCCTGTTTCGTCAG 2019373 36 100.0 30 .................................... CGAACTTCATTGATGTTGCGTGCGATAACA 2019307 36 100.0 30 .................................... TCTTTTTGGATACCCCTTGCCGCCCTGCAA 2019241 36 100.0 30 .................................... CGACGACGTTGCCGATGGATTTCGACATTT 2019175 36 100.0 30 .................................... TAGGGAGTAACGAGCCTGATGAAGTAGGTG 2019109 36 86.1 0 .........................G....AA..AT | T [2019079] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.3 30 ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Left flank : CACCTTGGCTGCCATCGACAAAATGGTTTCGTCATTTCAAGCCGGTGTAACCGATAAAAACGCCAAACAACTGAAACTGCCTGAAATCCTACCATTGAAAGAATACCGATATGAGTGAGGCCAAATTTATGAGGATTATCGTCTTCTTCGACCTACCGGTTATCACGGCGGCAAAGCGCAAAGCCGCCAATCAATTCCGCCAGTTTTTATTAAAAGACGGATACCAAATGCTCCAGCTTTCCGTATACAGCCGTATCGTCAAAGGCCGAGATTCGTTGCAAAAACACCACAACAGGCTGTGTGCAAACCTGCCGCAAGAAGGCTCAATCCGCTGTTTGGAGATAACAGAAAAGCAATATGCCGCCATGAAACTGCTGTTGGGCGAACTGAAAACCCAAGAAAAAAAGGTCAATTCAGACCAACTATTATTATTTTAAGCCCATTTTTTCAGAACAAATAAAACGGGAAACCCTTATAGAATAAGGATTCCCCGTCGAAGT # Right flank : GCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAAGGCTTTCACGGTTGCATCCCTTATCCATCAGTTCTTTAACAAACAATATGCCGTATTCATACTCTTCGTTTTCGGTCTTTTGTTTCAAAGTCGGATTGCAGATATAAAAAGAAACTGTTGTGATGCATTGGGATTCGTAGACTTTATCCTTGAACACTTTCATGATGTATGCTTTGTGGAAATATACGTGTTCGGGATTGACATTATAGAAAATAAACATGATTAAGCCCCTTCACTGGCTAGAGTTAAGGGGCTTTACAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGGAGCTACAACTAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //