Array 1 22281-21783 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816075.1 Lactobacillus sp. HMSC075D02 Scaffold361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22280 36 91.7 30 NNN................................. GATGAAGAAGAACTGACAAAGATGATCAAG 22214 36 100.0 30 .................................... TAAATCAGCGTGGGCAAGTTGTTTACACGG 22148 36 100.0 30 .................................... TATAGCCCTTGCAATCATAAACAAGTATAT 22082 36 100.0 30 .................................... CAAAGTCATATGTATAAAGACCCTAAAGGT 22016 36 100.0 30 .................................... TGTTAATGCTAATGAAATTGCCACAAAAGT 21950 36 100.0 30 .................................... TGGCTTCCCATGTATTTGACACATTACCTT 21884 36 100.0 30 .................................... GCCGTAACGGTCTGGTCAAATTCACTCACA 21818 36 91.7 0 ..........................A.....A.A. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : ATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCAGGATCAGACTGTTACCTATGTTTACACGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCTGGCCTACACACAAGAAGTAGTCAGTGAGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTACCGTGAGTGCCGTTTGGGACTACCAGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCACCAAGACACCGGTTACCACTCCTAAGGGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTTAACATTGCTAAACTATCCATTATTTGGGTCTCCTATAGTTGTGGAAGAGGAAAGGAAGTAATTGAAATAGAACGACAAAAATTATACAAGCGAGCAATGGACATGTTGTTAGATGGCTATGCTCCGTTAGACGCAGAGACATTAAGAGTTATGAAGGTACGCGAAGTTTATAGTCCTATTAATCGCGTAGACATGACAGCAGAGCAGTTAGGTGTTTGCTTTCCATTAAGACTAGTCAATAGAAAGCAATTGCGTGAGCTTAGAGAATTAATTCCACGTGACTTAACCCCGACAGAGATTTTTCTAAGAACAGCACGGTTGAAGGGTCAGGCAAAGCCATTGCACAACTATGCGCCTGATTCCGATGTCTGGCTTGATGGCATTATCGGTTCTTTATATTTTGGCGGTTCGGATGATGGGCATGATGATTTCTATTGACCAGACGCTGAAACTTGGTCTGGTAGTCCATCCTCTGAGATCGATATACGCCACAACTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 22674-22374 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816075.1 Lactobacillus sp. HMSC075D02 Scaffold361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22673 36 88.9 30 NNNN................................ CAGGATCAGACTGTTACCTATGTTTACACG 22607 36 100.0 30 .................................... CTGGCCTACACACAAGAAGTAGTCAGTGAG 22541 36 100.0 30 .................................... TTACCGTGAGTGCCGTTTGGGACTACCAGC 22475 36 100.0 30 .................................... ACCAAGACACCGGTTACCACTCCTAAGGGC 22409 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : AATGTTCATTTTGATGAGGAAGTAGTCACGGAGCCCTCCTCAAGAATTGAAGCAGCAATTCAGACTTTGGTAAAACTTGAAGAGAAACGGCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGAGGGTATGAGCAGGTTGTTAGATCAGGTTAAGGATACATCGTTGGAATTGCTTCTCATTGAATTTTCAGATGTCGATCGTAGAAAGTTCTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTTATGGACAGTCGAGAACTGATTGATTAAGGGACCGTGTGAAAACACCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCGTTATTTGTCGCCCCACGTACTGCTCTATCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCGATGAAGAAGAACTGACAAAGATGATCAAGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTAAATCAGCGTGGGCAAGTTGTTTACACGGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTATAGCCCTTGCAATCATAAACAAGTATATGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCAAAGTCATATGTATAAAGACCCTAAAGGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTGTTAATGCTAATGAAATTGCCACAAAAGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTGGCTTCCCATGTATTTGACACATTACCTTGTCTCAGGTAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815945.1 Lactobacillus sp. HMSC075D02 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 33 91.7 30 ---................................. TGGGACAGTCCGGCAGAATACTTTGGCTTA 64 36 100.0 30 .................................... CACGAAGACTACACGCACGCTGATGACTCA 130 36 100.0 30 .................................... CATGCCGCAATCATTTGGGTGTCGTCATTG 196 36 100.0 30 .................................... AAGCCGGTTAGACGTGACATGCAAGAGCTG 262 32 88.9 0 ................................---- | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.1 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : | # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //