Array 1 1642-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000194.1 Nostoc muscorum FACHB-395 contig194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1641 36 94.4 35 .......T............T............... TCTATGGAGTTCCAGTCCAAAGTTTATCTCCAATC 1570 36 97.2 37 .......T............................ TTTAATCTGTGACATAATAAGTATGACCTAAAGAATT 1497 36 100.0 35 .................................... AGCTTTCGCTGATTGGTGAGGGTTTCATTTATACC 1426 36 100.0 39 .................................... ACCCCAGGTGCAATGGGGTGATATTGGGCAAACTCCTGC 1351 36 100.0 41 .................................... TCACTCAAACTCCATTCAGTACCATCGAGCTTTACTGCAGA 1274 36 100.0 39 .................................... ATGTCCTTGATAGGCTTCTGGACTTTACCCCAGACTAAA 1199 36 97.2 41 ...............................A.... ATAACGTCCTCATACTCGATCGCGTCATTAGATTTCATAGG 1122 36 100.0 41 .................................... TCCCACACAGCGTTTAAGTCTGCCCACTCCATACAAGCAAG 1045 36 97.2 39 ....................T............... TATTCTGATTCGGGGATTTTGACCATTATTTTACTGGCG 970 36 86.1 0 .............A......T........A...G.T | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 97.2 39 ATTCCCACTCGCTGGGGATACTAATTGAATGGAAAC # Left flank : GTTCACTCCATCTAACCTACAAGGAATTGAGATTCCAATTAACAAGGGCGTTTTCAAGTAAATCAGGATCGTGCCTGAGTTGAGTAGGATCGATATCTAATCTGCAAGACCACCATTCTGGAACTGATGCAGAAGCATGAACATAGCAGTAACAAGAACTACACCATTGCCAAAGCTCTCCATGAGCCACATATTTTCTTGAATCAATTACTCTTTCTTGTTTACGTGTTGGAAAGTAGTAGCAATGAAGTATATTGCGTCCACAAACTGGACAAGATGCAGAAAGGTTAATTCCCTCTTGTGAATTATAAAAAATCATTGCCCATTTTTTATATACTTCCGGTGGAACATCTCGCCATTTATTATTAATATTTGACATTTTATCTATTGCCTATTCTGTGTTTGAATGTCAGTTGACTACCGAAAAATATCAAGATTTGCGTCGTCGTTTATGAAAAAACTTGAAGTTAAAAGCTGCGCTACTGGTACACCAAGCCACC # Right flank : CACATTAGATAGTAAATCTACAAAGTTACCTGCTGTCTTACCACACGTTACAGCGCTTCCGGCTATTATGTAATATCGTTTTCTCCTTGCCCCTCTCCTATCATTGCTTTCAGCTTTTAGGATGTACCTCATAGCTGGCGGAAGTGCTGTATCACTTTCTATTTTTGGGAACTATAACTAAAGGTTTAAAGAATAGGAAATGTTGGCAAAAAATCAAATTCGTTGGCGGCGAGTTCTGCTGGTAACAGCTTTAGGGACAGTAATTATATTTGTGATCGCTACAGCCTTCCGTTATTGGCAAGTAAAAACACAGGGTTGGTGTATCCGCTTTGCTCCAAATGGCACTCAAAAAGTTTTGTACGGTAACGACTGTTTGAAATAAATGTTTAGTGACAAGCTATTTTACGTCTACGCTAATCCAACACAGGAGGAAGTAGAACAAAGTAATCCCACTTCGTTGTTAGTTGAAAATTCAGTTTTAGGTGAAGAAGTCAAAGCAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 64912-65958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000001.1 Nostoc muscorum FACHB-395 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 64912 37 100.0 34 ..................................... TTAAACTATCTTCTCCACCCTGACAATTTAATGA 64983 37 100.0 33 ..................................... TACCGCCCCTACGGGGCAGGTAGCCCCCTCCCC 65053 37 100.0 39 ..................................... CGCCAATACTGCAATGATTCCCGATGTAAAATCACGTGG 65129 37 100.0 33 ..................................... TAGTAAAGTGGACAAATCAATACAGGATTTTAT 65199 37 100.0 40 ..................................... GTGGCTTGTGGGAATGCTGCTAATCTTTCACCAATCACAG 65276 37 100.0 36 ..................................... TTAGAATGGATGATTTATTCCTTTGATTTCTTCCTC 65349 37 100.0 31 ..................................... GCTTACCGTTTGCCCTCTTGCATGGAAAGTT 65417 37 100.0 39 ..................................... TTATAAGGCTTCCTGACCCGTATATCATGGGTACTTGAG 65493 37 100.0 34 ..................................... GGGGAAATCATTGCGTGAACACTGAAGGGGCGAT 65564 37 100.0 34 ..................................... CCAATACTTTATTAAATAGGATTGTTATATGTCT 65635 37 100.0 34 ..................................... TTTTCATTAGAAATCGCGTAACTATCAATAGCTG 65706 37 100.0 34 ..................................... AAAATTGGCGACAAGTTGGCGGCGATGCAGTGGA 65777 37 100.0 33 ..................................... CCTTAATCCCACTCATCATACACACCCAAAATC 65847 37 100.0 38 ..................................... GCCTTAAATGGTATCAGTTTGTAGATTTTAATCGTGAT 65922 36 89.2 0 .........C..............T....-......T | C [65940] ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 35 ATTGCAATTAATCAAAATCCCTATCAGGGATTGAAAC # Left flank : TTCGATTCTCAAGTCTTATGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCCTACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAATTGATTAAACCCGATACCGATAGCGTTCGTTTTTATTTTCTCTGTGGCTGCTGTCAGCGAAAAGTCGAACGTATTGGCGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTGGCTAGGTTTCTGTATTTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGCCCCAAAAAAGTGCTTCTATCCCAACTCCAGTAAGGCTTTCAACCCATTAGTCGCTTAATCCTTATCCGCGCAATCTCTGAAATGCGTATCAAAATACGATTTCAGCCTTTAAATTTTCTTGGCGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGTACCTTGAAAACTAAATACAGCTTGGCTTTCAGCCTCCCACT # Right flank : TAGTTGCTCCCTGCCCCCTGCCTCCTTTAATTTAGCTTAACGGTATAGCCAAACACGCAAGAGTGAAAGCAGTTGTTCAGTATCTACGGGTTTGGTGATGTAGTCTGATGCACCCGCTTCAATACACTTCTCGCGATCGCCTTGCATGGCTTTAGCTGTCAGTGCAATAATCGGCAAAGATTTAAATTGCTCGTTTTGGCGGATTAAGCTTGTTGTTTCGTAACCGTCCATTTCTGGCATCATTACATCCATCAAAACGACATCAATATCGGGTGTATTTTCTAACACGTTAATCCCCTCTCTGCCGTTTTCAGCGTATAACACTTGTATTTGATAACGCTCCAGCATACTTGTCAGCGCAAAAATATTCCGCACATCGTCGTCTACAATTAGCGCTTTTTTGCCAGCGAGTAAGTAATCTATGGAATGCAATTGTTCAAGTATTTGTCGTTTGGGTGCTGGTAAATTTGCTTGGACTCGGTGTAAAAATAATGCTGTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 76898-77065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000020.1 Nostoc muscorum FACHB-395 contig20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 76898 26 100.0 44 .......................... CAAGGCTAAATGTTTGCTCACTGCTTTAAACAGTTTCAATCCCT 76968 26 100.0 46 .......................... TTGATTGCAATTTTGTTGAATAAGAAGGAAAGATTACGTCTTATTC 77040 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================== ================== 3 26 100.0 46 AATAGGGATTTTATTTGATTGCAATT # Left flank : AGTATCTACGGTCAAAAATCGCTTGCGCCCTTTGACCTTTTTGCCAGCATCGTAACCCAAATCTCGGTTAACCATCGCCGCCGTTTTCACACTTTGACTATCGATTATCGCTTCTGATGAGCTAACCGCCCGTTCGTTGTCCACTCTCACCCAGTCTCGCTGTTGATCATGAATGCTCACCCACGTCCCATCTTGCCGCCAAGTCCGAAAGTAGGTATATACCGTTTGCCAATTCGGGAAGTCTCCTGGTAGGTTTCGCCAACTGCAACCTTGTATCAACACATAAAAAATCGCGTTGATTACTTGCCACATATCTACCATTCTAGGATGACCACCTTTTTTGCCTGCTGGAATTAACGGTTCTAATAATTCCCACTGGTCTGGAGTCAAGTTACTAGAGTATGCTTTACTCATCGCTCTCAATGGTGCTGTATGTAAGTATTTACAGCTTAGCCCTGAGAGCTTTTTTTACTCAACTACCGACTTTTCAAACCTCCTCT # Right flank : TTTGATTGCAATAATCCCTCTATTTCTTCATAGGAAGATACCCTAAGTTAACGACCCATGAGCTTACTACAGACTTTCTTTGATTTCTAGCAAAAACAATTGCCACCTCTCAAACCTCTGCATTTTACTTTTAACGCTCAATTTCGTTATAAAACTTAAAATTTTTCCTTAGCAGCTAACATCTGTAAAATCTTTTCTACATGATCCAACTCTCCAACGATTCGCCGAATTGGGTGCGGCCAAACTTTGACAAGGGTAGGAGTTGCAGAAACTTGATTGAGTTCTGCTTGTTCTGGATGACTTAAAACATCAATTACTTTCAGAGTATAAGGATGTCCGAGTGATCGCTCCAACAATTCGTGTAAATTTTGCAGAATGCGTTCGGTTGTACTGCTATGTCCTGCAACAAACAAGCGGAGAACATAGCCTTGTGTGATAACTTCCTTTTTTTGTACTATTACTGGTTGGTGGTATTTTGGCACAGGTTCAGAAAGGTCTAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGGGATTTTATTTGATTGCAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 3280-4342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000021.1 Nostoc muscorum FACHB-395 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3280 37 100.0 35 ..................................... CAGACAATGCTTTTAATTGGGCACGAGTCCAACGG 3352 37 100.0 37 ..................................... GCGGAAGTTTGGGAGAGATGCCAAGAGGTCGGATTGC 3426 37 100.0 34 ..................................... TTTGTGATTTTGTAAGGTGTTCCAGTACTATCGA 3497 37 100.0 34 ..................................... TCAGCATCAATTGCTAATTCAGCGACTTGAGCGC 3568 37 100.0 40 ..................................... TTATAAGGCTTCCTGACCCGTATATCATGGGTACTTGAGT 3645 37 100.0 38 ..................................... TTTGTGCCCCACTAAAATGCAAGCAATAGAAATCACTA 3720 37 100.0 36 ..................................... TTCTAGTAGCGGCTCAAAAGACACAAATCTAGTCGC 3793 37 100.0 35 ..................................... CCGTTCGGTCGCTACCGCTAACGCTAATGCCGCTG 3865 37 100.0 39 ..................................... AGCATCACCGCTCAAGATGAAGGGGATTACAAAATCGAA 3941 37 100.0 35 ..................................... CGAAATATCAAGGAGAAGTTCTAAGCTGTGGGCAA 4013 37 100.0 33 ..................................... TCAAAGCTTTGCAGGCATTGCCAAGACCTAAAA 4083 37 100.0 37 ..................................... TCTAATCACCTTGGGGCGATACCAGTAGACGATTTCC 4157 37 100.0 35 ..................................... AGAGCGGCCGCGAATTCTATTACTTCAAAAACATT 4229 37 97.3 40 ................................T.... TCAATCGGGATAGTGAGAATATTATTTCTATAAGCTATTG 4306 37 94.6 0 .......................C........T.... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.5 36 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTATTTCTTTCATCATCTCTACCTTAAATTGGCGGAAACTTTATTGTTGGTTATCAGTACAGTAGTACGACAACAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAATGTTTTTTCTGTGTGGCTCTTGTCAGAGAAAAGTCGCCTGTATTGGCAAAGAAAAGCCACGGGATAAGCAATTTTCTGTACTGAGTTACTTTCTGGCTGGGTTCTCATATCTCAAATGCGCGGAAGAGTAGGTGTAGAAATTCTAAAGTCCCCAAAAAGTGCTTCTATTCCAAATACAGTAAGGCTTTCAACCCATTAGTCACCTAATCCTAATCCGCGCAATCTCTAAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCCCTTGAATCGCGCAACTGTACCTTGAAAATTAAATACAGCTTGGGTTTCAGGCTCCCGCT # Right flank : CCAATGAGAAAAGGGTGGACAAGTAGCCCACCCTAAACCATTATTTAATTAGTATTACTTGACGGGTGCTTCAGTAGCAGACTTACCAACTAACATTGCGGTATTTTCGTCGCTTTCGAGGATACCGAATTCAATCAGCAACTCTTCTAACTCTTCCATCTCAATAGGAGTGGGGACAGTGAGCTTGTCGTTGTTGATAATCTTGGTAGCCAATGTCCGATATTCGTTACTTTGATTACTATCAGGAGCGTACTCGTTAACAGTCATCCGGCGCAATTCTGCGTGTTGAACGATGTTGTCACGAGGTACGTAATGAATCATTTGGGTGTTCAAACGTTTTGCCAAGGTTTCGATTAAGTCGATTTCCCGGTCAACGTTACGGCTGTTACAAATCAAACCACCCAAGCGCACGCCGCCAGTGTGAGCATATTTGAGAACACCACGAGCGATGTTGTTAGCTGCATACATCGCCATCATTTCACCAGAGGTAACGATGTAGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 85263-85941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000003.1 Nostoc muscorum FACHB-395 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 85263 37 100.0 36 ..................................... AATGGCTTTGGGGGAGGGGGCTACCTGCCCCGCAGG 85336 37 100.0 34 ..................................... TCTCTAGCTCTTCCCATCATGCGCCTTTGGTTGC 85407 37 100.0 34 ..................................... AAAAGTTTGAAGTTTCTATATTATATCATTCCTT 85478 37 100.0 36 ..................................... AATTACCAAAGCATTTAGGTCTATTACAGGAGTGCC 85551 37 100.0 35 ..................................... GCCCCGGCAGAGATACCAGCAAGAGGGTCAACGCC 85623 37 100.0 33 ..................................... TATACTTGCTGCTTTCTGGCGTTCTAGACCTTC 85693 37 100.0 33 ..................................... CTGAGTAATCTACGGTCGATCGACTGTAGAATA 85763 37 100.0 33 ..................................... AGAGCCAAGCTGAGATTTTTCCCATTACCCAAT 85833 37 97.3 35 ................................T.... TTTTATAAATTGAAAATAATCATCATTGAAAGGAT 85905 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 99.7 34 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : AAGAAGGTGTGGTGCATTATGGCGTTCCCAATATGCCAGGAGCAGTACCTTGGACAGCAACTCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAACTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCTAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCGGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTCTGTAAGAATTAGGCGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAACGAGAAGGGGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGGCACTAGTATTTTTAAACCATCCGCGCACCTTATGGGGAATGGCTTTCAGCGATTTGCCTCTAGCCGAATCACAATTCATCGTGTTATCATTTCAGCATTCGCGCAACCGAACCTTGAAAACCAAATAGGACAAAGCTTTCAGAAGCCAGCG # Right flank : CAGTGCGACTCATTCTAAAGTAAAAAATATCAATGGATATATAACTTTAGGTGAGAATAACTTGGATAAAACCTAGGAAATTCGATAACTAATTCTCGGATGTAGGTGAGAAACCTACCCTGGAAAGGAAACAGTGACTCCCAATCTGTCCACACCAAATAGACTCAGAATTCTATAGAGTGAAGGTGGAAACAGGACACAATCAAAGCCAAAAACAGATATGGCACACTCGTGTTAAAGGGGAGATTACATGAATCGCCTATAGTACTTACATCTGTACATAGAGCAACGAAGAAAGCATTAAAGCATTACCAAACTACTTTGTGTTTCTTCCTCTAGTTCATAACCATTAGCTAATTTTTCAATTGCTTGGTCAAGCATACCCAAACCTTGATCTACCTTTTCAACTAAACTTAGCTGTCCTCGAAGTTCGGCAGCACCAACGAAACCCTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGCACGCCGCGATCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 1363-2969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000210.1 Nostoc muscorum FACHB-395 contig210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1363 36 100.0 35 .................................... AAACTTCTTTTAACAGCCGTAGCATCAGATTTCAA 1434 36 100.0 37 .................................... TGATAAATCCAACCATTTTCGCAAAATGCCCGTATAA 1507 36 97.2 39 ......G............................. GTTCCGGTATATAGCTGATTAGGCATAATATTAATAGGA 1582 36 97.2 37 ....................G............... AAATAACCTAGACTATAGATTCTATATCCATAGTCAG 1655 36 97.2 36 ....................C............... TTGATACCCTTCCACTGCTCTTGTGGGCTTATAGGC 1727 36 100.0 44 .................................... TTCTGAAGAATGTTTACGCGATCGCATCTCACCTCCAATCCCGA 1807 36 97.2 37 ....................C............... CCGTTGTTTGTTGCACAGTCAATTTCAAAAACATTCA 1880 36 91.7 47 ...T...........A....C............... TCTTGATCAGCCTCTCTAGTCTTGCCATCAACGTGCAACGCAGATAT 1963 36 94.4 50 ....................C.T............. AAGTCGTTACCTTTGAAATCCCATTGTCCATCACCTTTTCTAGACTTCAA 2049 35 91.7 38 ......-.............C.T............. TGACTGCGATCGCGCTTCGTCGTTGGGCTTGGTTTCTG 2122 36 100.0 43 .................................... TCAGCAGCTTTGAGAGCCGCTTTCTCAACAACATCATTGATAA 2201 36 100.0 44 .................................... TCCAGACTGCGCGATCGCTTCATTCAACTTTTCTTCAAATTCAA 2281 36 100.0 37 .................................... GTGGTTTTAGTAGGCGGTAAGGAAGTACAACGTTTTG 2354 36 100.0 34 .................................... CGATCGCTACAAGGCTCCAAAAAACTTGTCAGCA 2424 36 97.2 37 ....................C............... TTAATAGGCTTGGGAGTACGACACATAACGGTTTCAT 2497 35 94.4 38 .............A...............-...... GCAATTTCTCAATATTCCCTTGAGTTAGCAATCTGGGG 2570 36 97.2 34 ....................A............... TTTTGTAATACTGATTCAGGTACTAAGTTCATAG 2640 36 97.2 36 ....................C............... TTGATACCGTTCCACTGCTCTTGTGGGCTTATACGC 2712 36 94.4 37 ....................A.T............. CGATAGCGATCCAAGACATCTTGGGTTAAAATCATAA 2785 36 97.2 38 ....................C............... TAATCAATTGCTAAATCAGCAATATTCCTCTCATCAGT 2859 36 94.4 39 ...T................C............... CAGCAGCTAACAAAAATAAACAAGAAGCAAAAAGATGGC 2934 36 94.4 0 ............A.......C............... | ========== ====== ====== ====== ==================================== ================================================== ================== 22 36 97.0 39 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : ACATTGAAAACAAAGTTAAATTTATTACTATATATATTTCACATCGGTCTGCTACTGTACGTAATGCTTTAGTCTCTGTTGTTAATAATGGTGTAACTTTGGTGAGTTTATTAATTGCACCTATGGGTTTGACGGTAGTAATTATTAATACTTGGTTGATGACGTTTGGTACTTATATTATTTCGAGTGCAGCTGATAGGGTAGTGAAGTGGTTGCAACCAGGGGGAAAGGCAGAATTAATTTCCCCTTCTCAAGTAGAATCTTAGGGTGTGGGGTCAGCTGTGATTGAACCGCCTAGTTCGGTGATTATTTAATGATGTTACCGAGGTTCAGGGAAAATAGCTGAAATGCTTATTTGAGCGTTGTGAGCTTCGGTTGCTTACAGGGTAAGGGTTTGGGGTATGTTAGTGATTGATGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTTTAGAATCGAGGA # Right flank : CTGCACAACTAATGCAATTTGTCAAAAAATAAAAAATATTTAGCTAAAACCTAATCAATTAACTCAAAGCTTTGCCAAAAGGGAATTTGAGGGATTTAGCTCTATTAAAAATGAATATTGACTATTATTGGACATTCCCAATATAAATTTATACAATCAAACCGGACACCATAGAAAGGGATTCACCCATGTCAGAAGCATACTGGCAAGCAAAAATATGGGGATTACTCCATGATCCGGTGCTAAAAGCGTTACACAATAACACTGGGCGCGGTGACAATAGCTTTTGGCAACAATTAGAAGTGATGCAACCTTGGGTGCAGAACAATTATAATCCTGAAGAGTCCGGGCGTAAAATCTTAAAACATATACATTTGGCTGATTACATTGCCTCCGCCAGTGATAGAGGTGCAATTGGCAGCGTTGCCCAAAGTATAAATTATGCACCTGGAAAGGATTTGCAAAAAGGGTTAGAAATCTCTCATTTGCTGTCTGGCGAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : ATTCCCACTCGCTGGGGATACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 124302-124097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000009.1 Nostoc muscorum FACHB-395 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 124301 25 100.0 35 ......................... CGCTAGCTGGGCGGACATCACCAAACTCCCCTGTG 124241 25 92.0 35 .................A..A.... CACTAGCTGGGCGAACGTTGCCGTAAGACGATATA 124181 25 100.0 35 ......................... GACTGGCTGGAATAACGTTGCCGTAAGACGCTGGG 124121 25 96.0 0 ........A................ | ========== ====== ====== ====== ========================= =================================== ================== 4 25 97.0 35 TCTGCGGGGTCGCCGTAGGGGTCTT # Left flank : TATTAAATCAGTCGCGGTTGTTGCCTGTAGCGGCATATCTGCAAGGTGAATACGGTTTAGAAGATGTTGTAATTGGTGTTCCCTGTCGTTTGGGATGCGGTGGAATTGAGAGTGTATTGGAATTGACACTCAGCGATGAAGAAAGAGAGGGTTTGCATACTTCGGCTCAATCTGTGCGTCAAAATATTGAGCGATCGCAGGAAATTTTGGCTAACAAAAATAATTCCTAATTCGTAATTCAACATGTCATATAGTGCAATACGGTTCGGTTAAGGGAAGAGACGCGATAAATCGCCGTCTCTACAAAAGACTGATTATTGTAAAGACGGCGATTTATCGCGTCTTTGTGGATAATTTATTTTTTGCAACTCTCTTACTACATAAAACTGTCCCTCTCCGACTCGGAGAGGGACAGACTTGAACTTTAGTTCAAGGCAGGGAGAGGTTTGTCAAACTCACCAGAATATTTGTGCCGTTCGCGTTAACGACGGTAATCCTCA # Right flank : CGCTGGCTGGGCGGACATTGCGATCGCGGAATTCAGCATTTTGATCAGCTTGATCGCTGTTCGATCCCAAGAGTAAATCTTTCGCCTTTCGGAAAAATTCATTTACCATAATCTAGTCTCCTGATTTAAGTTCGTGTTTCCGACGTGCGCGATGGCGTTATCCTCTGGGAAACCCGCTTTATATTTACACACGCTTCGCTGATCTAGAGTGCTGGTGCTGCGGATGAAGTTATACCAGTTAGATCGCGACCTGTGGCACTCCGGTTATAGCCCTGGAATTCCCGATACTTTTGTGCTTCAGATTCGGGTACTCGGATTCCTTCTGCTGGTGGCGTTACCCAGTGAGCGCGATGTTCAGCATCGCGGTAGTATACGCGCCCGTTCTTGGAAAGATAGTACTTACCTTGCGCTCCTTCTTGGGGAGCATTCTTATGCTGGTTGTACATGTAGTAAAGTGCCGCAGCCCCCGCCAAAAGTGCCACTTTTTGACCTGTACCCAA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGCGGGGTCGCCGTAGGGGTCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 1710-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000129.1 Nostoc muscorum FACHB-395 contig129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1709 36 97.2 34 ....................T............... GCAGTTGGCGGCACAAGGTAAACAAGTTTGTTGT 1639 36 97.2 35 ....................T............... TCAATACCTTCAGCAATGCGATGTTCATTATCAAT 1568 36 97.2 37 ....................T............... TTGGTGAAGTAATCCTTTGTCAGTGTGTGTTTATTGA 1495 36 97.2 35 ....................T............... GCTTTGGGTTCCCTGCGATCGTGTCCTTTGTCAAT 1424 36 97.2 41 ....................T............... TTGCCCCATTCTTTTTACAGAACTTAATTGCTTTTACTGGA 1347 36 94.4 41 .........T..A....................... TTGACTGCGAAATCAGAGAGGTGTTCAGCGATCGCCGCCTC 1270 36 100.0 36 .................................... TATATGAACCGTCGCATCAGATAAGATATTTAACCA 1198 36 100.0 37 .................................... CGATAGCGATCCAAGACATCTTGGGTTGAAATCATAA 1125 36 97.2 36 ..............A..................... ACAACTATGCGTAGAGGGATTTTTTCGGGATCTGGA 1053 36 94.4 40 .........G..........T............... CAAACTAACTAACCAGTTATAAGTACGTAATTCCTCTATT 977 36 94.4 43 .........G..........T............... TAAATAGTTACGTTAGTCAGTTTTTGTCATTTCAGGCGATAAG 898 36 97.2 37 ....T............................... TATCAGGAAGCACATGGATAGCCGAGGTGTTAAATAA 825 36 100.0 39 .................................... AACTGCCTCTTTAGCTTCCTTCTAGGCACTAATGCAAGG 750 36 100.0 43 .................................... CTGCACGTCTCATAGCGTGATTCAATGTACGCTTTGACCTTAC 671 36 100.0 41 .................................... TGTGTTCCCGTTCTATTTAGCTTTAGAGCGCTAGTCAATAT 594 36 97.2 43 .............A...................... ATTGAAAAGGGCGTGATGCAGTTGGTTTTGGATGATGGCACGG 515 36 100.0 45 .................................... TCATTAAAAGCTTCTTTAGCTAAATACTGTTGGTTGTCTTCAAAC 434 36 100.0 38 .................................... CAAGTAATGATGTCTTCCGCTCTCACGTATTGTATAAA 360 36 100.0 37 .................................... CAGAAAATGTCGGCGTTGAGCAGTTCGCGGGCGATTC 287 36 100.0 37 .................................... TCGTCATCTTCTACAACTTCTAAGCCGTCGTTGTCAG 214 36 83.3 0 .........T...A......T........A...G.T | ========== ====== ====== ====== ==================================== ============================================= ================== 21 36 97.3 39 ATTCCCACTCGCTGGGGATACTAATTGAATGGAAAC # Left flank : CTTCCTACAATTGAATTGAGGAAGTGGCGCAAAAGTTGTGCCGAATTCGGGGCAGAATCCGGGGTTTGACTTTTTGCAGGAATGCTGGGAAGATCCGGCTTTGCAGATTGTGATCAAGAAATTGGTAGCGAAGTATCCGCAGTGGGGGATTGCTTCCGTAGACGGACAACTGGTTAACTGCGGTTAATAGCGAGGAAAGTAGCAACACCTTCTCTGAACCTACGGCGATACTTCCTCGCCCATAACTCACCCAAGAGGTCTTTTATAATTGAAGGTGAAAGTCTTACGATTTTTAATCTCTTGTCATTATTTAACTGTGTTACCGAAGTTCAAGGAAAAAGCCTGAAGTGCCAGTAAAGTGGTTGTGAGCTTCGGTTAATTGTTGGGTAAGGGTTTGGGGGTTTTTAATGATTGATGGAATGACAGTTTGGCGATTAATATTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTGCTGGGTAAGGGTCTAAAATTGAGGG # Right flank : TCACATTAGATAGTAAATCTACAAAGTTACCTGCTATCTTACCACACGTTACAGCGCTTCCGGCTATTATGCAATATCGTTTTCTCCTTGCCCCTCTCCTATCATTGCTTTCAGCTTTTAGGATGTACCTCATAGCTGGCGGAAGTGCTGTATCACTTTCTATTTTTGGGAACTATAAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATACTAATTGAATGGAAAC # Alternate repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10730-10046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000101.1 Nostoc muscorum FACHB-395 contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 10729 37 97.3 35 ........G............................ TTGGAACGAAGGCAAAATTATGTGCAGCGTAATTA 10657 37 97.3 35 ........G............................ TACGAATATACCTAGCTTCATGTAATTCGGATATC 10585 37 97.3 36 ........G............................ CAGTCTTACGAGATTTACCATTAATCAAAACGGATG 10512 37 97.3 35 ........G............................ AGCCTGGTGCGACCCGGAGGCACTCAAAATCACAT 10440 37 100.0 33 ..................................... GAAGAATTGGTTGCATCTAGAGCTAGACGAGCA 10370 37 100.0 35 ..................................... GAATGTAGCTTTTGTGTTGGCTGCTATCGTTGCAT 10298 37 100.0 34 ..................................... TTAAAATTCTGGTTGAAAGGAATGGTATTGAACG 10227 37 100.0 36 ..................................... GCAATAGTGACTAGTAGTTCGCCAACCCAAAATTGC 10154 37 100.0 35 ..................................... GATGCTTCTAACGCCGATCTACCCTGCCTTGCGTG 10082 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 98.9 35 GTTGCAATCTAACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATGACCCTACTTTGCAGATTGTGATCAAGAAGTTGCTGGCGAAGTTTCCGCAGTGGGGGGTTGCGATTGTGGATTGAATGTTGGTAAAGTGGAATGAATAGCGATGCCTACAGCAAACCTTTCAGGAAAAGCGCTTTAACCGCTAGCATATTCTAGTACAGTAATCAATTTTGAGAGTAGCGTAACTTCAGAAGCTATAGCTATTTATATCGTTATGATATGAAAAGTTCATTGGCTCACTGTAAACACAACAAGATTATTTCCCTTGCGGAATGCGCGGGTAGGTAGGTGTTCAAAACCAAAAATAGGGAAAGAGGTTTCAAATGCGCCTAGTGCAAGAGTTTTAGCCAAAATAGTTGCTCAAGCACCCGCGCACCTTACACAGACTAGGTTTTAGCTATTTCTTTACTACTCAATCTAAATTCTCTATGCTATGATTGACCTATCCGCGCATCGGAACCTTGAAAACCTAATAAACACACGGTTTTGCGACTGTATCG # Right flank : GGCTTTAGAGTATAATTTTAGAGTTTCAGGAAACGAATAATGGCGACAACTAAATATCAAGCTTATACAAATGTGCCAAAGCCGAGTTCAAAACTGGCAGAAATAATAAAGCAATCGGGGACAACTTTATATTTAGATGCAGGGGCAATAGTTCAACTCATATATCCAGATAAATCGGTATTAAAAATAACTGTAGGTAGACAAGAAAGCATATTTAAATTGACGGATATTCGTGCGATTATCGCAACAGAACCAGAAATTAAATCGTCAGCGCTCACAAAAATCCTGCAATGGCGCATTCCAGTAATTTTATTTTCTCAATCTGGTGAATTCCTGGGAAGGATTGAACCAGATTATCAAATCAGGACAGATATCATGCAGTCCCAGGTTATGATGACCGATGCTATGAGAGTCGAGATTATGCAAGGTGTAGCCTGGGGTCGCCTCCGTCGCCTTCGGCGTTTTCTACAACGCTCTGGGCGTGATGGTGCTGTAGAAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCTAACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAATGTAACTTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 35418-36102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000018.1 Nostoc muscorum FACHB-395 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 35418 37 100.0 33 ..................................... CCTAAGCTTGATTGATTAGGGGTTTTTTTAAAC 35488 37 100.0 36 ..................................... ATATCTATAGTAACCTTTATACAGAAAGAGGTAAAA 35561 37 100.0 35 ..................................... AAGGTTCAATCGGGATAGTGAGCATATTCTTTCGA 35633 37 100.0 37 ..................................... TACAGTATTCTTGATTGTGATTTAGGGATTGATGAAA 35707 37 100.0 34 ..................................... GAGAAAGCTGCGCTCAAAGCTGCTGAAGGTTATG 35778 37 100.0 33 ..................................... GACATGAGTATCCCTGCTGAAATCAGGCAGCAA 35848 37 100.0 35 ..................................... TAGATAGCGCCACATGGAGGCAAGTTTACAGTTTA 35920 37 100.0 36 ..................................... AATTAAGTGCCCTATTCTTCCGCAATTATCAATATA 35993 37 100.0 36 ..................................... GCGCCGATTAGAAGCTGATATTAGGGCGGGGTTACA 36066 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.7 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCCCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCAATTGAATTAGATAATATAGTAGCGAATGACAATATAAGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTACGTGTTGAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACAGTATTATAGGGTTTTAAGTCAGTTTTTCTTTGCTGAGTCACCTTTTCGTTAGTTTCCTGTATGTCAAATGCGCGGAAGGGTAGGTGTACAAATTTCACAGTCACCAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCTCACTAATCACCTTATTCCCATCCGCGCAATCTCTGAAATGCTTGCTAGAAATGGGTTTCAGCTTTCAATCTGTCCCGGCACTCTTTCCAAACGAATTCTCTAATGCTATGATTGCTCTTGAACCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGACTTCAGGCTCCCGC # Right flank : CTAGCTGTTTCTACTTTTTGCAATATCTTACGTTCTATATTGAAACCCAAAAATTGCTGCTAATACTGGGGAGAGAAGCAAAAATGTATGAGTCAATGGGTTTATAATTGGAAACTGTGACTCAGCGAGAAGTTTGGATCTAAGGAATTCCTGGCTCAAATCTCCTTCCAAGGGGAGATGCCAAAGGCGAACGGTGACAACTCATAATTGGAGCGAGGCGACTGGTGAGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGCGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAACATCTGGGTTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACAGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGTGAAGCAGGGTTTCGCCAAATAGAAAGTGACGTGCTTTCGCAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGGATTGTATTACGGCGAGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 1636-3245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000182.1 Nostoc muscorum FACHB-395 contig182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1636 36 91.7 35 A..............A..........C......... ACTGCTGATTTAACACTTGCTGAAGTTGCCGCTAA 1707 36 94.4 37 ...............A..........C......... AAATGAAAAACCTTGCAGTCTTTACCAAGCTACAAAA 1780 36 100.0 38 .................................... ATTATCATGGCTACTGTAATTCCTGCTGAAAAATTCAA 1854 36 100.0 40 .................................... CTTAAAAAATGTCTGCTGTTTTAACTAACGTTACTTTAAC 1930 36 97.2 40 .........................G.......... AAGACAGACAGGAGTTAATGCGGCGTATTGCTCTGTGTGA 2006 36 94.4 39 ...............A..........A......... AACTCAGATCATGGCTATTCAAATCAACACTTCTTCTAA 2081 36 97.2 41 ................................A... TAACCCTGACCTTGAAGTTTCACTTTTAATCTCTGAATCTT 2158 36 100.0 40 .................................... TTTATATCCCAGAGCATTGGAAAATTGCTTACTTACAAAA 2234 36 100.0 38 .................................... TCGCTACATCAGGAGAAAAGACATGGTTGCTTACAAAA 2308 36 100.0 40 .................................... AACCTGAGCCAATTAGCAGAGGTGTTGGGAGAAGAGAGAA 2384 36 100.0 36 .................................... ACTAGTTATCTTCGATCCCCATTATGACGTTGACGA 2456 36 100.0 35 .................................... CTTTTTCTTACTGCTTCTATCATCCTAGCTTCAAT 2527 36 100.0 49 .................................... ACATTATGGCAAGAGCTAAAAGCACAGTTACAGCTACTTCTAATACTAC 2612 36 97.2 36 .........................T.......... TTAGGAGCTTATCATGCAGTCAATACTAACACAACT 2684 36 97.2 50 ...............A.................... TTGAAGTCTAGAAAAGGTGATGGACAATGGGATTTCAAAGGTAACGACTT 2770 36 100.0 41 .................................... TTGTGCGACGGAGAGGCGCACGTTTACTACTTTGGGTTTAA 2847 36 100.0 37 .................................... CATTTTGGGAAGTAGTCAGACCAGCAATGTCAGATAC 2920 36 94.4 37 .....................T........A..... TGACAGATCCGATCTATGTTAGCGCGGATAGTGTAAG 2993 35 88.9 38 ...........-...A.C................T. TCAACTTGGTTGGTCTGGGGAGGAACATTTGCATCAGA 3066 36 94.4 37 ...............A.......T............ GCTAATAGATCATGCTAAAAATCAAAGATAATGTACA 3139 36 94.4 35 ...............A.......T............ ATCACATCTGCTTCAGGCAACACTTCTGCTTTAAT 3210 36 88.9 0 ...............A........C.A.....A... | ========== ====== ====== ====== ==================================== ================================================== ================== 22 36 96.8 39 GTTTCCATTCAATTAGTATCCCCAGCGAGTGGGAAT # Left flank : TTGCACCAGACAGCAAATGAGAGATTTCTAACCCTCTTTGGGAATCCTTTCCAGGTGCATAATTTATGCTTTGGGCAACGCTGCTAATACCACCTTTATCACTCGCCAAGGCAATGTCAACAGCCAGATGTATGTGTTTTAAGATTTCATACTCGGACTCTTCAGGATTATAATTGTTTTGCACCCAAGGTTGCATCACTTCTAATTGTTGCCAAAAGCTATTGTCACCGCGCCCAGTGTTATTGTGTAACGCTTTTAGCACCGGATCATGGAGTAATCCCCATATTTTTGCTTGCCAGTATGCTTCTGACATGGGTGAATCCCTTTCTATGGTGTCCGGTTTGATTGTATAAATTTATATTGGGAATGTCCAATAATAGTCAATATTCATTTTTAAGATTGCTCAATCTCTTAAATTCACTCATGGTAAGGCTTTGAGCTAATTGGTTGGATTTTAGCTAAATATTTTTTATTTTTTGGCAAATTGCATTAGTTGTGTA # Right flank : TTACTGACCCTTACAGCATCTACGGCTGTTATGAGGTACAATAGCAGCAACTAGCAAACCAGTTTCTTAAATGTTGAGGATTTATTAATTCGAGTGCAACTGAGATGACTGTATCAACCATTTCTGTTGTAGTTGGAGCGAAACTGCGTAAAAAAGATTTAAGTTGTGACCACCATAGTTGAATTGGATTAAAATCGGGGGAATATGAGGATAAACAGATAACTTTCGCACCTACAGCTTCAATCATTGGCACAATTGAATCTAGTTTATGTGCGGATAAATTATCCATCACCACCACTGCTCCTGACCATAATTGTGGTACTAAAAACTTTTCAACAAATAATTCAAATGCAATGCCATCCATTGAACCATTCATTGTCATTAATGCGACTACTTTTTTAATACTAATTGCTCCAATTACTGTAACTTTTGATCCCCGGTAGAAGGGGTTAAGAGAGTAAGCTCTTGTTCCCATTTGTGAACGGGCATGAGTTCTCATT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTATCCCCAGCGAGTGGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [9-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 5015-4300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSF010000182.1 Nostoc muscorum FACHB-395 contig182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 5014 36 100.0 31 .................................... CAGCCGGTCGAGGCGGGTGGCAGGCGCAGAG 4947 36 100.0 46 .................................... TTAGACCACTTACCAGTTGTACTATCCCAAACAGCTTTACCAGCTT 4865 36 100.0 40 .................................... GGTGATTGCATTATTTAAATCCAAAATGTTTACCAATGAT 4789 36 100.0 37 .................................... CCATCAACGATGCAATCATCGCCATTCATCTCTACCA 4716 36 97.2 34 ...................A................ GAGAAGACAATACGGCTGCTGTCATGTTATTCAA 4646 36 94.4 36 ...................AC............... CTAGAATCGCCATTCTCTAGTGCTTCTTCGTCGTAT 4574 36 97.2 51 ...................A................ CGACCAAAGGAAAGCACTTTATCTAATTCAATAGGTAGCGGCATATTTAAA 4487 36 94.4 41 ..........A........A................ TAGGGTGTGCGATCGCAGAGCTTACGGGCAAACACCAAATT 4410 36 91.7 39 .........T.........AC............... ACGCCTTGAGAAAATTCACCGTTTGGAAAAAATTGTAGT 4335 36 86.1 0 .......T.T......A..AC............... | ========== ====== ====== ====== ==================================== =================================================== ================== 10 36 96.1 40 ATTCCCACTCGCTGGGGATGTTAATTGAATGGAAAC # Left flank : CATTGAAAACAAAGTTAAATTTATTACTATATATATTTCACGTCGGTCTGCTACTGTACGTAATGCTTTAGTCTCTGTTGTTAATGGTGGTGTAACTTTGGTGATTTTATTAATTGCACCTATGGGTTTGGCGGCAGTAATCATTAATACTTTGTTGATGACATTTGGTACTTATATTATTTCGAGCGCAGCTGATAGGGTAGTGAAGTGGTTGGAACCAGGAGGAAAGGCAGAATTAATTTCCCCTTCTCAAGTAGAATCTTGGGGTGTGGGGCTATCTGTGATTGAACCACCTAGTTCAGTGATTATTTAATCTATTTTGCCGAGGTTCAGGTAAAATGGCTGAAGTTCCTATTTTGGCGTTCTGACCTTCGGTTGCATACAGTACAAGGGTTTGAGGTATGTTGGTGATTGATGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAGGG # Right flank : TTTTAATGCTTCACCAAAAGCACGATACAGCACTTGCGTCTATTATGAGGTACACTAGATTAAAATATAAATACTTTTAAATGAAATCCTACTCTGTCGATCTTCGAGAAAAAATAGTTGCAGCACATCTTGAGAAAAACATTTCAATCAGGAAAGTGGCTAACATTTTTTCAGTCTCAAAGAGTTTAGTACAAAAGCTTGTAAAACAACAAAAAGTTGAAGGAAATTTACAATCTAAGCCGCGAGGAAAGCCACAATTTAGTCATTTAACAAATGCTGACACAGAGTTGAGAGAATTAGTTGAATCATATCCAGATGCAACATTGATAGAGTTGTGTGAATTATTTGCAGACAAGACTGGCAATTGGGTAGGTCAAAGTGCAATGTGTCGTGCGTTACAGAAATTAGGATTAAATCGGAAAAAAAAACAAAGCGTAGTACCCAAGCAGGCACAGAGAGAGTCTTGAATTTAAGACTAGATTATTGGGAAAAGGTCAAAC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATGTTAATTGAATGGAAAC # Alternate repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //