Array 1 607247-599680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHWK010000001.1 Bifidobacterium commune strain DSM 28792 Ga0264363_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 607246 32 100.0 33 ................................ TTCGCGGCCACGCACGTGGTGCCGGACCCGCAC 607181 32 100.0 35 ................................ TCACTTTTTTCGGCTGTTGGGTCCCTCCGCCGCGG 607114 32 100.0 33 ................................ TATCCTGACTTGATTAATTATCTAGCAGTGCTA 607049 32 100.0 35 ................................ TTGATGGCGTCGGCCGCGTTGCGGAATGGCGCGGT 606982 32 100.0 33 ................................ GTCAGCGGCTTGCAGAACGGCGTCGTGCTGCAC 606917 32 100.0 35 ................................ GCGTCGAGCTTGGGGCGTCGACCGCCCTTGCGCCC 606850 32 100.0 34 ................................ GAAAAGTTACTCAGCGAATCGACTGTTGGTTTAT 606784 32 100.0 34 ................................ TCTATGTATGGAGTAGGAGTTCCATATTTTGGAA 606718 32 100.0 34 ................................ CCTCACGCCTAACGGTCATATACTGGTGTGCGAA 606652 32 100.0 34 ................................ GTTGTTGATAATCCTGAAATCAGTATCGAGTGAA 606586 32 100.0 33 ................................ TCGCATGGTGTCCATTGTGTCGCCGACGGGGTA 606521 32 100.0 33 ................................ CGGTACGCACCTTGCGGCGACCGCGTACCGGTG 606456 32 100.0 34 ................................ GATACATTTGTCGGCGCTCGCCAAGGGCATTGAT 606390 32 100.0 34 ................................ TATAATCATGGGAATCAACCAGTACCGTACTCCG 606324 32 100.0 35 ................................ CCTTGCGGAAAGGATAAATAGCTTGAGAAAATAAT 606257 32 100.0 34 ................................ GCGACCCCAGAGCAAACGGCATCGGCCACCGCCA 606191 32 100.0 34 ................................ TGGGAATTTGTCAAAAACGACACCATGCCTGAAT 606125 32 100.0 34 ................................ TTGATGATGGTGCTCGTATTGTGTGGTATTCAGA 606059 32 100.0 33 ................................ ATTGCATTGACTCCCCTCGTGCGGCTATAAGAC 605994 32 100.0 34 ................................ TATGAAAAGTTCCCCATCTTCTTTGCTGATTCGT 605928 32 100.0 35 ................................ GAAAATCAGTCGGCAACGGAATTCAAGGGCGGCAG 605861 32 100.0 34 ................................ GGCGTGTTCCGGCAGTTCTGTGTCGTTTTGGATT 605795 32 100.0 34 ................................ CGTGACTGTTGCCGTGCTTGTGTCGATTATGTAG 605729 32 100.0 33 ................................ GGTCTGGCGGTGCGTAGCGGGTCGGAGCTCACT 605664 32 100.0 33 ................................ GGTGTGCAGCAGTTCCTTGAGTCTGGCCAGCTG 605599 32 100.0 34 ................................ GACGGGCTAGACGAGGCGAAGCTCTGCTACCAGC 605533 32 100.0 35 ................................ ATGAACGTCTCCGGGTCGACCGTCAACCAGCTCGG 605466 32 100.0 36 ................................ GACGCCACCCCTATCATGCACGCCGAGCGCGAGCTG 605398 32 100.0 34 ................................ CCCTGACTTTCTGTCGGCGCTTGTCGGCCAACCT 605332 32 100.0 34 ................................ GTTGTTGACGCTCTGCGCCTTGGTGTGGTTGTCC 605266 32 100.0 34 ................................ ATACACATCAACGAGGCGGGTGGGGTCATAAAAC 605200 32 100.0 35 ................................ GGGATGGGGCGCCGATTCCAGATCGGACCGGTCAT 605133 32 100.0 34 ................................ CCCGTGTCTTGGGGTGACCTCGTCGCCGACCTTG 605067 32 100.0 34 ................................ CGTGACGTGATCCCGTGCACGTGGCCGCTGACCG 605001 32 100.0 33 ................................ ACAAACCGGTCCCCATGCACCCAATGCACCAGC 604936 32 100.0 34 ................................ AATTATAGCTGTATTAAGGTCTGCTATTTTCGAG 604870 32 100.0 35 ................................ GTCCTTTGGACGATGATTCCAGTATACCCCCCAGC 604803 32 100.0 33 ................................ AGACAGGCGGAGGATGACGTGAGGCGCGCGTGG 604738 32 100.0 35 ................................ AGGCTTGAAAACCTGTTGAGGTCAACCCTTGGCGA 604671 32 100.0 34 ................................ GTGCCACTCGCCATAGTCAACCCACGTGTATAAC 604605 32 100.0 34 ................................ CTTTCAACGAAAACTGGCAGGACGAGCCGAACAT 604539 32 100.0 34 ................................ ATATTTGGAAACAAATAAATGAAATATGGTGTTC 604473 32 100.0 33 ................................ ATTGTCACTCTCATGTCTCCCTTGGGAGACTAT 604408 32 100.0 35 ................................ GACCGTTGCGATCACCGCAGGCTTGACGTCAGCTC 604341 32 100.0 34 ................................ GCTGGCTTGGTTGTATGAGTTGATGGCGTTTCGA 604275 32 100.0 34 ................................ TCATGTCGCGTCCGAGTTGGGTGCCGGTCTTGCG 604209 32 100.0 33 ................................ TCCTGAGCGTATATTCACAATATGGTGATATCT 604144 32 100.0 34 ................................ ATTGTGCAGAAGACACATATGCCATTGGCGTATC 604078 32 100.0 34 ................................ ATGATTCCGCCGGGCCCAAGCTTGCTGATGGTGG 604012 32 100.0 34 ................................ ATGACATTGAGAGAAACCACACGAATAACATTGG 603946 32 100.0 34 ................................ TCGATGCTATCGAAGCAATGAGCGTGACCCAAGT 603880 32 100.0 36 ................................ GAGTGGCGCCCGCCCGCACAGTGCAATCAGCGGACG 603812 32 100.0 33 ................................ ATCGCGGACCAGTCAAAACTGGTCCGCAGCCAG 603747 32 100.0 36 ................................ GGGACATGGCAACGTCCATCATCAAACGATGAATGG 603679 32 100.0 34 ................................ TTATTTGCAAAGGAGAGAGAGAATGAACTCGGCG 603613 32 100.0 34 ................................ GTGACGGAGCCCCGGCAGTATGCTTACAGGAAGC 603547 32 100.0 34 ................................ TTCATTAAGGTCGACATTCAAGCATAAGCAATTG 603481 32 100.0 35 ................................ CGAATGTTCCTTGTCGCGCACGTCGGCGATCTTGG 603414 32 100.0 34 ................................ CCTAATGTTTTCGCAGTTAACGAGACGAGGTAGT 603348 32 100.0 33 ................................ ATATCATATGAGTTATGAAGAAGCATGTCGATT 603283 32 100.0 34 ................................ GCCGCGCCACATCCACAATGTCACAGACTCAATA 603217 32 100.0 35 ................................ CCAATTCGGTCAGGGATTGCTCTATACCCTTGGGC 603150 32 100.0 35 ................................ AGCCCACTCCCTTACGTCATCAGCCCTCGCTTTGG 603083 32 100.0 36 ................................ CCCGAATATTTTGCCGATAAGCCTTTAAGCGTGGGT 603015 32 100.0 33 ................................ GCTCAAACGATTGGAAGTCGGAACTCATGACAA 602950 32 100.0 34 ................................ CCCCACGCACAACCGCTGTCTGCAACACGCCACG 602884 32 100.0 34 ................................ GTCGAACCGTTGATGAACGGCAAGGGCAAGGAGC 602818 32 100.0 34 ................................ ATCGACGGCGTCGGCGGACGTGGAATAAGGGATT 602752 32 100.0 34 ................................ AATTTTTGCTACTGCTGTTATGAATCGTTTGCCT 602686 32 100.0 33 ................................ TGCTACTTGTAGACGGCATGGGCGCCCATGTCG 602621 32 100.0 34 ................................ TTCTGCTGGGACTATCTTTACGAGACCACGACGT 602555 32 100.0 34 ................................ GGCGTCGTCCTCGTCCAACGCGGTCGGTGCGGCC 602489 32 100.0 34 ................................ GTTAAAATTCTGTTCAGCCATTGTCTGCACCTCC 602423 32 100.0 34 ................................ CGGTAGATTGACCTGCTCACGACTCCCGTCGCCT 602357 32 100.0 34 ................................ CATCGAGGAAGGCAATCGCGGAAACTTTGCACAT 602291 32 100.0 35 ................................ GCGGCGATCGGGATAAGACCGGTCGGAGTCCACCA 602224 32 100.0 34 ................................ CAAGGATTTTGAATTTGAGAGGCGGGACCATATC 602158 32 100.0 35 ................................ CACATCTGTGTGCGGAAGCTCCATGCCTGGATCTG 602091 32 100.0 34 ................................ TTAAACGACACATGATATAATACACGATTTGTAC 602025 32 100.0 34 ................................ GTTGTTGTCGTCGGCGTTTTGTAGGGACTCTGGC 601959 32 100.0 34 ................................ CACGTTCAGTTATCACATACGGGTCCAGATTGTA 601893 32 100.0 35 ................................ CCTCAGACCGCATACGCGCTCACATGGGGTGATCT 601826 32 100.0 34 ................................ CTTGGTGCCGGTGTCGCCGTCGTCGGTGAGGTCG 601760 32 100.0 34 ................................ GCTCATGCCTTTGAGTCTGACGCTTTTGACGGGG 601694 32 100.0 34 ................................ GGGCAGCTCCCACCTGCCTGTGACGGACTCGTAT 601628 32 100.0 34 ................................ GATCGCCTATCCTGTAGGCCTCGCTCATGCAATC 601562 32 100.0 34 ................................ TCCGGTCTGTTCGGACGGTTTGCCACACAGATCG 601496 32 100.0 34 ................................ TTTTGCCGCTTGCATCAGCCCCAGACGGTTCTGT 601430 32 100.0 34 ................................ CTCGTTGTCGGGATCTCCAGCCTTGCACCAACCG 601364 32 100.0 34 ................................ CCGACCAATGACATCCATCCGCAAAAGGACGGTA 601298 32 100.0 34 ................................ TCATACCCTTGGTGACAAAAAAGGGGGGAGGTAA 601232 32 100.0 35 ................................ TTCCCACAGCGACGAGACGGGCAAGGCCACCGCAC 601165 32 100.0 34 ................................ CCTTTGGGAGATTTGGTGACAGTCGTGGCCACTT 601099 32 100.0 34 ................................ TGACCAGAACCATCACGAGCGAACTCAATATCCG 601033 32 100.0 36 ................................ CAATGACCATCATTGATTCGTTCCGGGTGGTCTCTG 600965 32 100.0 35 ................................ ATGAACACGATCCAATGCGTGCCGGTCTGCCTGGG 600898 32 96.9 34 ..T............................. AGATTGGGATAAATACGCCAGCCCTAATGGTGAG 600832 32 100.0 34 ................................ GCTATGACTCGCTTGCGCCAACATCCCGTTTCCG 600766 32 100.0 34 ................................ TGATGGCATGGCTGGCGAATGCGGGCTACACTTT 600700 32 100.0 34 ................................ TGTTGGTCTGTTGGGTCAATTGGTTGCGCGCCCA 600634 32 100.0 33 ................................ TCACAGCTCTGGTAATCGACAAGATCCACGAGA 600569 32 100.0 34 ................................ TCTACCGTGGGGAGAGAACGGCACTGCACCCGAG 600503 32 100.0 34 ................................ CTTGGGCCAAGGGGCGGAGAGGGGCCATGTGCCA 600437 32 100.0 34 ................................ GTTACCGCAGGCGAAATGCTTGACAAGGTTCGTT 600371 32 100.0 34 ................................ TAAATCATTTTCAGCTCTGACCATGATTTTCATT 600305 32 100.0 35 ................................ CTGATTGTAACGGTTGGAATTGTCGGCAACGCGAA 600238 32 100.0 34 ................................ GCTGTGACTCGCTTGCGCCAACATCCCGTTTCCG 600172 32 100.0 34 ................................ AACGATATCCACCCCAATGCCGCACTCGCTTTAC 600106 32 100.0 34 ................................ TCACCGGCCCAATGCAGACCGGTTCCCAGCGGTA 600040 32 100.0 34 ................................ GGCGAGGTTGGCGAGGATGGTGAGCAGGTGCGGC 599974 32 100.0 34 ................................ TGGTCGAGATAGGGCCTGATGACGTTGCCGGCGG 599908 32 96.9 33 ............................G... CCTGATGAGTTTATCAAGCAATCGTTCACGTTC 599843 32 93.8 34 ............TT.................. CGCATCCCAAGAGGGGTCAAGGGCGACACAAGCG 599777 32 96.9 33 ......................C......... GACACCATGAAAGCAAAACGGTACTCTGCTGAT 599712 32 75.0 0 .......T....ATAT..A........TT... | T [599701] ========== ====== ====== ====== ================================ ==================================== ================== 115 32 99.6 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : TCGTGGCCAAGGCGTGCGTCAAATTCGGGCAGCGTGTCCAAAATAGTGTTTTTGAGTGCCTTGTCTCACCTTCCGATTTGCTGCTTTTAAAGAACGAGTTGAATGGCATCATTGATCCCGAGAAGGATAGTTTGCGATTCTATAATTTAGGTACCAAATATTCGAACCGAATCGATCATATTGGAAAGGTACGGCACCTTCCTGAGGATGAGATTATGATGGTTTAAGCTCAAGCAATTGATTTCTTTCATTGTTTGTATTGCAATAGGGTGTGTAGCGTAGTCGTTGCGAGTGCGAAAGTGAAGCACTCATTTTTTTTCAGAAGGTTCGCACCTGTTTTGCAAGGTATTTTCGGACTATCATTTTTAATGATGGGTCTGATGGCTGTTTGATAATTGAAAAGAGAAGAAAAAATAACTGACTTACGGGAATTCTGCAAAGATTCGCAGCTGGTACAATAGCGCTGTTTGCATTTTGGAATATTTGATTTCAAATTTGCA # Right flank : TCAGTAGCATCAATTGAGTGTGATTTTGACGAAAGATTCTTACGTGTAGTGTATGCCTCATGGATTCTATGCCCAATTTCGGGGAAATGTGGCTGAGATTGAATGCACGCTGAAATGATTAATGAATATAGTGTGTCGGCAGATATAGCGTCATGAGGCTTGTCGCGCTTTGGAGCACGGTCTTATAGACTTGCGAGTGGTATCGGATTTGGCTGGCGAAGCATGAGAAGGCGTGAGAGTGATGGATACAGGTGTGACTGATGTGGTGTTCGGGCTCGATGGCTTGCTTGTTCAGTGGGACGGGCGGTTGCCCATTGTCGGGCAGTATCCGCAGAGCATCGCCGACATGATGCTCAATCCGAGCGACGAGTGGGGGATGGGTTTTCATCTCGCGATGCTTGAAAGCGGTTGGGATGAGGAACGGGTGCTTGCCTCGTACGAGAAGCATCACGGGCCTGCCATCGCTTGGGTGCTCAGAATGTACCTTGAGCATGAAGTGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //