Array 1 429074-427444 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFG01000001.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 429073 28 100.0 32 ............................ TTTCTGTGGTTATACAACAGAAGCGATGCATT 429013 28 100.0 32 ............................ ATTCTCCGCCGCCGACATGAATATAAGAGCTT 428953 28 100.0 32 ............................ TAACACTCCAAAAAAAGTCGCTCCACCCGCTT 428893 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 428833 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 428773 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 428713 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 428653 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 428593 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 428533 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 428473 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 428413 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 428353 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 428293 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 428233 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 428173 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 428113 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 428053 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 427993 28 100.0 14 ............................ CATACCAGAACTAG Deletion [427952] 427951 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 427891 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 427831 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 427771 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 427711 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 427651 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 427591 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 427531 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 427471 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 730-1237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFG01000102.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 730 28 100.0 32 ............................ TTTATTGGCGGTTCTCGTGTTGTCTGAAATCA 790 28 100.0 32 ............................ ACAAAGCAGACGAGCGCAGCGGGAAGCGGTGC 850 28 100.0 32 ............................ AATGGCCGGTCAATTAGCTGGAGGAGTAGTGG 910 28 100.0 32 ............................ AACCTGATAATCCGAGCCGACATCACCCCACC 970 28 100.0 32 ............................ ACATAGCTAAGCACTTGCAATTACTTGGTTGG 1030 28 100.0 32 ............................ CGGAGTCATAACTGTAGGTTTCCACCCTAGTA 1090 28 100.0 32 ............................ AACGTGAGATGCAGTTGGAAATGAGAGCCTCA 1150 28 100.0 32 ............................ ATATGATTTGACTATCTATATTACGCGCCATT 1210 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTTGATGACCGAATTCAGTGAATAGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATACTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAATTATCCTCTTCTCTTAAATTATCGAGCATGCTGCCACATAGGTAGTTTAGAGCATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTGAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58824-60349 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFG01000027.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58824 28 100.0 32 ............................ CTGTTGAAATGTCGCCCCTTTTGCGCCGATGC 58884 28 100.0 32 ............................ AAACAGCATTGAAGCGGAACAAAGCGTTCTGG 58944 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 59004 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 59064 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 59124 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 59184 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 59244 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 59304 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 59364 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 59424 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 59484 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 59544 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 59604 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 59662 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 59722 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 59782 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 59842 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 59902 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 59962 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 60022 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 60082 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 60142 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 60202 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 60262 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 60322 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25881-25433 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFG01000035.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25880 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 25820 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25760 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25700 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25640 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25580 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 25520 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 25460 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29262-28813 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFG01000035.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29261 28 100.0 32 ............................ TCTTGAGTGTAGGTTAGGATAAAAATAACCAA 29201 28 100.0 32 ............................ ATATTCGTTCAGCTGCAAACACAGTAAGTGAA 29141 28 100.0 32 ............................ TCAGTGGTTTCACCATAAATCTTGATTGGCGC 29081 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 29021 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 28960 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 28900 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 28840 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27753-26405 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFG01000004.1 Photorhabdus laumondii subsp. laumondii strain M-TT01 M_TT01i_2_scf0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27752 28 100.0 32 ............................ ACAGCTCACGAAATGCAACACGATGCATGATA 27692 28 100.0 32 ............................ AACCCGCTTCTGCTGCGGATGCTGCTGGAGTT 27632 28 100.0 32 ............................ TGGAATAAGAGAGTAAATGTGGAGGAGTAGCT 27572 28 100.0 32 ............................ AATCAGCAACCCTATTCACCGGAGACGTTCGA 27512 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 27452 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 27392 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 27332 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 27272 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 27212 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 27152 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 27092 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 27032 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 26972 28 100.0 32 ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 26912 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 26852 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 26792 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 26732 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 26672 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 26612 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 26552 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 26492 28 96.4 32 ...........C................ ACTCCACATCCGGCGCTTGATTCACATCTACA 26432 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //