Array 1 220818-220584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJDO010000003.1 Streptococcus pyogenes strain NS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 220817 36 94.4 30 ....AC.............................. ACTTCGACGCGACCTAAACGTTCCTCGTGT 220751 36 100.0 30 .................................... AATCTGCGTTAGATTTGTTTTGGTGTAAGT 220685 36 100.0 30 .................................... AACAAAAAGACGTCCATGTGAACGCCTCCT 220619 36 86.1 0 .......................G.....T.C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : TTGATACAATTATATATTATTTTATTTCACAAATAAAGTTTTTGGGCGAAAAAATCACTATATCTTGTGTCCTCAAACAAAATTATATACAATTTGTTGTATTTTGAATAAAAACCAACCGCTCAGATAATTTCTGGGCGGTTTTTTTGTGTTTCACACACATTGGCATATCCGTTATAACGGACTTGTTAAAATTAGTCCATTAAACCAGACTTTTTACGAATATATAAGTAGGAGGTGCTTATGCTAACATACGACGAATTTAAGCAAGCAATTGACAATGGATATATCACAGCAGACACAGTTATGATCGTGCGTAAAGACGGACAGATTTTTGATTATGTGTTGCCAGGAGAGGAAGTCAGGCCATGGGAGGTGTTGACAGAGGAAAAAGTGGAAGAAGTGATGAGGGAATTAGACAAATAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGGTGATCCAATCTATTGATATAAAGCCTTTTTA # Right flank : AATATTGCCAATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGAGGGGTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGACAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 34888-34719 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJDO010000010.1 Streptococcus pyogenes strain NS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34887 36 100.0 30 .................................... TGTTAAAGAAGTGACAACTTTAGACAACAA 34821 36 100.0 31 .................................... CCGGATATTGCAAACACAGCTGTAACGCTTT 34754 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 31 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTAGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGACTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAT # Right flank : CTATAGAGGCTCAGCGTTGTATGCGTCAATGTTTTAGAGCTATGAAAATCTTTTATTTATGATATAATGATTTGTGTGTAAATATGCGCTTCTACGGCGTGTATTTTTTTGTTTCCAAAATATTTTCTGCGTATTTTACCGTGCTTTTTTGCCTTCTGTCGGGGAATTCAGTCGGGAAATATTATTGTCTAAAAAAGCTGAAAATGTGTCTGTAACTTGAACAGATAGTTCATCGTGTACCTGATTATATTTATCAGTCATATACATTTTTGTGTGGCCCAGTGCTTTACTGAGAGCTTCCATGGGAACCCCAGCAATTATGCTTTGAGTGGTAAAAAAGTGTCGCATCATGTGAGGGGTGACACGAAAACCAACACTCTCATTAACTTTCTCAAATTCATCATTGAGTTTGTTTGGATTAATGAGATTACCGTCTTCCTTAATGCTTATATAATCCCATTCTTTGTCTTTGATGATGGAAAGTCGTTTTTTGATAGCAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //