Array 1 486833-487775 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJT01000002.1 Salmonella enterica subsp. salamae strain CCUG 30039T contig_0000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486833 29 100.0 32 ............................. GGTCGGATCAGCTGCGGCGGATAGTCCATTCA 486894 29 100.0 32 ............................. ATTAGCGGCGTTTAACGTCATCAGGTTTTCAA 486955 29 100.0 32 ............................. AGAACTGACTGTAGGTAGCATTGTTATTGTTC 487016 29 100.0 32 ............................. GGACGTCTTTTTATTTCATCTCCTTTTCTCGC 487077 29 100.0 32 ............................. GTTTAGGGGGAACAAATCCGGGGTGAGGAATA 487138 29 96.6 32 ............................T AGATGGCCGCAAGACTCAGACGCGGCGGATCA 487199 29 100.0 32 ............................. AGTATGCAAAGTTGATTCTGTCGAATAGCGGG 487260 29 100.0 32 ............................. TTTGCGCGTGAACGTGGCTCTTGCGGTCGAGA 487321 29 93.1 32 ...........................TA CTTTTTCGCCGGTTAACGGTTCAAAATCCTGC 487382 29 100.0 32 ............................. AGATTATCTACCAGGTCGCTGGGGGCCGGTGC 487443 29 100.0 32 ............................. TAAACCCCTGTTTATAATCTTTGCTCACCTTT 487504 29 100.0 32 ............................. AAAATACAGTGTGGGAAAAAAGTAAAAACAAT 487565 29 100.0 32 ............................. AAATCGAGACCGATAGGCTGGCGGCGCACCCG 487626 29 100.0 32 ............................. ATGGCTATTTCTCAAAACTTTAAAACGCAGGT 487687 29 100.0 32 ............................. GGGGCAGGGAGCCGCCTCAGTTGTACCAGGAA 487748 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTTTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503923-504746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJT01000002.1 Salmonella enterica subsp. salamae strain CCUG 30039T contig_0000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 503923 29 100.0 32 ............................. TTGTTCATTGTTTGCTCCATAGCCCCGGCGAA 503984 29 100.0 32 ............................. CCTGAAATCGCAGCAAAACGCAGCGATACTGT 504045 29 100.0 32 ............................. CACTTCATGAACCGCGATACAGCGATTCACCG 504106 29 100.0 32 ............................. CGTTTTGCCGCTCTGCCACTGACCCGGTCGCC 504167 29 100.0 32 ............................. CGCACAGTGTCAGTAAGGAAGCGTGGGAAGTC 504228 29 100.0 32 ............................. TGACAATTTCAACGGGTAGCACGGTTGATCTG 504289 29 100.0 32 ............................. TTCGCGAGCCAGTGAGTAATCGTGAAATCGAG 504350 29 100.0 32 ............................. CGTTTTAAAAACATTTGTTAACTTTTAATATT 504411 29 100.0 32 ............................. CGGCTGCCAATATCCGGCAGGCACGCGCTATG 504472 29 100.0 32 ............................. TCGCCGTCTGCATTGATCGCAGCTTTAGCGAG 504533 29 100.0 32 ............................. TGGCAGGCGTTTGAGAGCATCTACCCGTCGCT 504594 29 96.6 33 ............................A GCGCGTCTAAAAAATGCGCCGTATTCACCTCCT 504656 29 100.0 33 ............................. ATGCCAAGCTCGTTCGCCTTGCTTGATGACCAC 504718 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCCCTTGAAAATCAATGAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGCAGTAAAAAATCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1158210-1156412 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXJT01000001.1 Salmonella enterica subsp. salamae strain CCUG 30039T contig_0000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1158209 29 100.0 32 ............................. GCTCAAAAATCAGTTACAGACAATACTAACGC 1158148 29 100.0 32 ............................. TCTTTGACGCTGGCAATCGCCACGTTGTAGAG 1158087 29 100.0 32 ............................. CTGCATACTCCAGCAATTGTGCGGCGGCGTTC 1158026 29 100.0 32 ............................. GCCCAGGTCATTTTTAATGAGGAATGGATAGT 1157965 29 100.0 32 ............................. ATCCGCTGAAATCCCGGTGGATAACATACCGA 1157904 29 100.0 32 ............................. AGCTGCGGGACGTTGAAAAGGACGGCTGCGGC 1157843 29 100.0 32 ............................. CCAGTTCTTGGCCTCGTAAATATCGCCCTGTT 1157782 29 100.0 32 ............................. CCAGATACCGCGATCTGTGCGAAAGCGTTTAT 1157721 29 100.0 32 ............................. TAACTTTGTGTCGCTGCATACGGCAAAGAGTA 1157660 29 100.0 32 ............................. TTGACGTAGTTAGCGTGGATGATGTCGGTTAT 1157599 29 100.0 32 ............................. GGGCGACCTCCGTTAAATTATTTATTTGAAGC 1157538 29 100.0 32 ............................. GCTTTGGCCTACATTCACTGCAAAACTTTGCT 1157477 29 100.0 32 ............................. AAACAACGCTGTCCCAGATGCCGATGACGGAT 1157416 29 100.0 32 ............................. TTCATCCATACGCTCACTGAATCCACGCTCCC 1157355 29 100.0 32 ............................. CTACATTTGGGGGCTATCTATTCACACTCTGT 1157294 29 100.0 32 ............................. GAAAAACCGGATGTACAGGACGGGCTTGCTGC 1157233 29 100.0 32 ............................. CGGCTGGTTAGACGTTATCCGGGTTCAAATCC 1157172 29 100.0 32 ............................. CTGTTATCATTGTTATTATCACTGATTTTATT 1157111 29 100.0 32 ............................. CGATCAAGATGGATAAGCGCCTCTTCGCGGGT 1157050 29 96.6 32 ...........................T. CCGAAATTGCTCAGAAAGTTTCCACCGCAGTA 1156989 29 100.0 32 ............................. GCCACGACGCCTGACCCCATCGGGACAGACTT 1156928 29 96.6 32 ..........T.................. CGACCTGTTCCGGAAATACCGCGCCCGCCGTG 1156867 29 100.0 32 ............................. CGACGCTTCCATCGTCTGACAGGCCTGCTCGT 1156806 29 100.0 32 ............................. TTGCTCATTGGGCTCCCCCCTCAAACAAAACC 1156745 29 100.0 32 ............................. TTGTAGCCTTTCCAGTTGAGTTTGCATTGTTC 1156684 29 100.0 32 ............................. TAATGCTGGCCACGACAGCGCAGCAGATTACA 1156623 29 96.6 32 .........T................... CAGTGAAACGCGCTGTCGCGTATGTTGGGTTC 1156562 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 1156501 29 100.0 32 ............................. ATACTGCGCGTTTCTGTAGCGCCGTAATTCAG 1156440 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCGTACAGAGAGATATGAGACACTATGCTTAACGGGGATAAGATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTTCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCGGGGGTAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //