Array 1 128825-124630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFQS010000004.1 Streptococcus sp. zg-86 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 128824 36 100.0 30 .................................... CAAAAACAGCCTGATAACGATAAGCCTTCA 128758 36 100.0 30 .................................... CAAAATATTTATAAACTATACTGAAGAATA 128692 36 100.0 30 .................................... TCTTCATTTACATAAACCACATCGTTATCT 128626 36 100.0 30 .................................... ACACGGTCAAACAAAGCGGACTTTGAAAGA 128560 36 100.0 30 .................................... GCAATGAGATGAGCAGGTCTGCACAGTTCA 128494 36 100.0 30 .................................... CGCAAGCATATGACGAAAGGGCAATCATAA 128428 36 100.0 30 .................................... AATCAATCCAAAAGATATCCAAATACGCAT 128362 36 100.0 30 .................................... GAACCATTGCTATTCTAGCCTTATCCTCTT 128296 36 100.0 30 .................................... GAGACACTCATATTCTGATGTGCATGTGTA 128230 36 100.0 30 .................................... TTCTAGCTTCTACTGGTTTAAGAACACCAT 128164 36 100.0 30 .................................... AGTACGGATTCACAAGTTTGGCGATTTAGA 128098 36 100.0 30 .................................... TAGAGTTAGCTTTTTGGTCAATAGCGGAGA 128032 36 100.0 30 .................................... AATTCTTGCCGTACGATTTCCAAGATGTTT 127966 36 100.0 30 .................................... ATAAGGAACGATATACGCTTGCCCTAAACT 127900 36 100.0 30 .................................... TTGACGATACGATTTCGTTCAAACTGGATA 127834 36 100.0 30 .................................... CGCTGTACGATGGTCCATGCGCAGGAGTTA 127768 36 100.0 30 .................................... CTTGCGTGGAATCGAGTGTTTGGTGGAATA 127702 36 100.0 29 .................................... TGCGATACCATTCAATAACAGCATCTCTA 127637 36 100.0 30 .................................... ACAAGAGCTCTATTTCATTCATTAACTGAT 127571 36 100.0 30 .................................... TAAAAAAGTAAAAAAGCCTGACGGCAATCA 127505 36 100.0 30 .................................... TTGAAGCTGGATTGATGGAACGGTATTTGC 127439 36 100.0 30 .................................... CTTTAATTCTATTAATGTAAAGTACTGACT 127373 36 100.0 30 .................................... TAATTTTCGGTTCAGTAGCTCGACGTTATC 127307 36 100.0 30 .................................... TGGTGATAGTATGTTGCCACGCTACGAACC 127241 36 100.0 30 .................................... AAGATACGAGTCAAACCGTCCCAAGCGGAT 127175 36 100.0 30 .................................... GTTCCGTTAGTTATTCATGTGCACGTCAAG 127109 36 100.0 30 .................................... ATTAATGTGGTTTTTACCGTCAACATAAAT 127043 36 100.0 30 .................................... CGAATATCTGGACGAGCTATTGACACAGCA 126977 36 100.0 30 .................................... GGACTATATTGTTTCTATCTTCAGCGGGAT 126911 36 100.0 30 .................................... TTTCACGGTCAGCTCCTTCCGTCTTTCCTT 126845 36 100.0 30 .................................... CTAATGATTGTCACTTGCGCATGTCGGAGA 126779 36 100.0 30 .................................... AGATTGTAGCATATGAGACTTTATCAAGTT 126713 36 100.0 30 .................................... TTTAGCTTACAAAAATATAATACACCTTAT 126647 36 100.0 30 .................................... TCAACCAAAAAAAGAAATGAATATAGGGGC 126581 36 100.0 30 .................................... TAGCTTCTCTGCTTCTGCTAACGCAAGGCG 126515 36 100.0 30 .................................... GGACAATCGCTTGTTTTGTGAGATTGTCAA 126449 36 100.0 30 .................................... GATTGCCATGATTGGGGATAACAAGCATTA 126383 36 100.0 30 .................................... ATACCAAGCACGAGTACAACATTGGAGATG 126317 36 100.0 30 .................................... TGTTACAGTTCTTGGAGAATACCAGCCTGT 126251 36 100.0 31 .................................... ATTTTTTCTCCTCACACTCAACGTTTGGCGA 126184 36 100.0 31 .................................... TTACATAACAGCCTACGGACGTGTATATCTA 126117 36 100.0 30 .................................... GCCACACTACGATTATGCAATCGGTGTACG 126051 36 100.0 30 .................................... TGAATTTTTTTCTTGAACTTTTGTTCAATG 125985 36 100.0 30 .................................... TGCGATGCCGCTTTCTAAATCTTCGAGGGC 125919 36 100.0 30 .................................... GGCCAGAATTACGTGGTGAGTGAAGCGGCT 125853 36 100.0 30 .................................... GACCGAGCAGAAAAAGCTAGTCCAAATCAC 125787 36 100.0 30 .................................... CGATAATCTGCATCAGTCGCAATACGGTTG 125721 36 100.0 30 .................................... CAATAAGCCGCTTGTGATGACGCTCGGGAC 125655 36 100.0 30 .................................... AGAAGGCAGCACCAATTGATGTCACTCCTC 125589 36 100.0 30 .................................... TGGTATCATCGTCCACCTCCTCAATTAGCT 125523 36 100.0 30 .................................... ACTGGCAAATCGAGGTCTTGACTGCGGTTT 125457 36 100.0 30 .................................... ATAATTTTTATCCAATTTACGATTGGACGA 125391 36 100.0 30 .................................... TTCCAATTCCTAAGAAAGTATTTACTCCTA 125325 36 100.0 30 .................................... TTACGAAAAAATCAATTATTGTTAAGTCTT 125259 36 100.0 30 .................................... ATTTCCCAAAAAGACAAGCACTCCGATACT 125193 36 100.0 30 .................................... TACAAGTTAGTCATTACCACAAGAAAAAAC 125127 36 100.0 30 .................................... CACCATTAATAGCGGGATTCGACTGTTGAA 125061 36 100.0 30 .................................... CGGTATATCACCGTGTCTAAACACAATGCA 124995 36 100.0 30 .................................... TATAATAGATTTACCAGTTATTACATCACA 124929 36 100.0 30 .................................... TTTATTTTGTTTTGTATTTCGGTATAATTT 124863 36 100.0 30 .................................... GCGGACTTCTAGCTTTTGTCGCCCTCTGGA 124797 36 100.0 30 .................................... AGGAACCCCCAAAGGCGCTGCAGTTGATAT 124731 36 100.0 30 .................................... AATGGTATTTTTACAAAAACGCTTCAAATC 124665 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 64 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Left flank : TCAGTTGAATGAAAAACCTGAAGTGAAATCTATGATTGAGAAATTAGCATCAACTATTACAGATTTGATTGCCTTTGAATGTTTGGAGAATGAATTGGATCTAGAATATGATGAGATTACTATTTTAGAGTTGATCAAGGCATTAGGAGTACAGATTGAGACGAGGAGCGATACAATTTTTGAAAAATGTTTTGAAATTTTACAAATCTACAACTACCTACAGAAAAAACGGATACTTGTCTTTTTCAATATTGGAGCTTATTTAACAAGAACAGAGCTAGTGAAGCTATTAGAATATATTAGCTTATCGAATCAGACAGTCTTGTTTTTAGAGCCTAAGAAATTATACGATTTCCCACAATATATCCTTGACCAAGATTATTTCTTAACTGTTGAACATATGGTATAATAAGATAGAATAGTTGGAATCGGTTGGAACGAGAGTCTAGCTGAGACGAATGGCGCGATTACGAAATCTAGTAAAAAATTTTTTCTACGAG # Right flank : TGAAACTTAGAATGATTTTCTAACAAGTATAAATGGATTGGGTGTCAATCTTAATTAGAGGAGTATTTTATTCTAAGATAGTCATTCCTCATAATGATATATTTATTTAATGAGGAACATGGTGAACCACCTAGAGCGATCTAGGTGCTTTTTTCATACAAATAATCTACAGGGAATGGTCTGTATTGTTATTAGTAAATCAGCATGCAGGTGAATGACTAGATGGTGCTTTCCTAGTCATTTTCCACTCTTTTTGGTATAATAAAGAACGGAAAATACAAGAAAAGTTTGTATCTTGTTGTGCTGAATATAGCTTAGGTATTGTGTAAAAAAAGACAGAGCTGTTCTAGCTTTAGTTAGTTGCAGTCTTGCCTCCCTTTAGAGAGAATCTTTCCTAGAATCAAGGAGATTCTTCGTCAAGATTCCTAATTTTTCTGTAGCTGTTGCGAGCTTGCTCGCTTTACAGATACGGATGCCCTAAGGGTATACAGTATGTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 4588-3498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFQS010000008.1 Streptococcus sp. zg-86 Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 4587 29 100.0 40 ............................. TTACTGTTTTCATGATATTCATGAGGTTTCCTTCTTTCCT 4518 29 100.0 38 ............................. GAAATCAAAATCAGAAAAATCAACTGTTTTTTCAAAAT 4451 29 100.0 42 ............................. TGAATAGGAAGTTCATTTGTGACTTCAACTGGAGCAGGTGTG 4380 29 100.0 46 ............................. TTAATACGTTTGAACGTTTTGTTCATGATAGGTTTCCTTCTTTCCT 4305 29 100.0 43 ............................. TGTTTCAAGTGTTACTGTGTATGACATAATTTATTTCCTCTTT 4233 29 100.0 38 ............................. GCATGAGCGCTGTAATATTCATAATATTTCCTCCTTAT 4166 29 100.0 43 ............................. AAACGGCCTTTAGTGATTTGAACATGATGTTTCCTTCTTTCCT 4094 29 100.0 38 ............................. TCAAATCCGAAAAGAGATTTTAAAGTAAATGTAAATGT 4027 29 100.0 38 ............................. GTATTCACTAATGTGTCCACCTGGTGAACATACGATTC 3960 29 100.0 53 ............................. TTGCTCCTTAGCCACGTTAACTAACGATTGGATTTGGCGTTCGATGTCTGTGT 3878 29 100.0 38 ............................. AGTCTGTCTTGGTTTTTGATTTTATCTAACGCTTCAAC 3811 29 96.6 37 ...............C............. GCTTTAAAAATTCGTTTTTGAAATACTCAATAAACTG 3745 29 100.0 46 ............................. AATTTAGTTTCCGTTTTCTTTCGTTTCATGAAAAATACCTCTTTTT 3670 29 100.0 43 ............................. CAAGTTCCACTAGAACTTTATCTTCGTTAGATTGAATAATTGG 3598 29 100.0 43 ............................. CAGCAATAAGAACTTGATTTGCAAACATAATTATTTCCTCTTT 3526 29 82.8 0 ......................AAA..TT | ========== ====== ====== ====== ============================= ===================================================== ================== 16 29 98.7 42 GTATTACCTTACCTATAAGGAATTGAGAC # Left flank : CACGCTTCGAACAATCGGCCTTATTCGCTTCATCTAGATTTTGCTGATTATTTCAAGCCTATTATTGTTGATAGGGTCATATTGTCTCTGATTAATAGGCATCAAATCCACATGCCACAACACTTTGAATATAAGGAAGATGGGGCGGTGTGGCTTAATTCAGCTGGTAAAAGAATCGTTTTGGAAGCTTTGGAGAGCAAATTCCATACTCGGCTCGTTCTGAAGCATACCACCTATACCTATCATCAGTTAATACAACGTGATGTTCAACTGTTTAAAAAATTTATTTTAGGTGATAGGGATGTAAAGCGCTTTACACCATTTAAATACTACTAAAAGTCGGTCGAAGATTTTATAAATTGTATTGCAATTTATAAAACAGCAGTAGCAAGCTTTTTGCCTGCCGACCATTAAGCGATTGACCGACTTTTAATACGAAATACTTGAATAGTTTGCATATTTGTACTATAATTAAAGTGTTGACTGCCCTACTTGCAGTT # Right flank : ACTTATCTTGTCTTAGCAGTGTGTAACTGGTGCATTTCATTCTTGACATCATAAAAAATCAGAGGAGGAACTTGAATCCGACCTCTGATTGTCTATTTCTAGAAAGGAGTTACCACTTGTGGTAAAATCAGCCTATAGCTACCATGTTTTTATTCTTCCTTTTCTATTGAAAGGCATAAACAAGGGAGCAATAACAACAAAACTCACTCGCCAGAATTGGGAGCGAATACAAGTCATGGGAGAGTTGCCCTATTTAAGAGAGGATGAAACCATCCACTATGCGCATCATTTCTATTTCAATAAGGAAGCAAAAGAATTGATTCACAGCCCAGTTGTTGAGGGCAAGGAGACAGATGAATTTTCCTATCTCGTTGAAAATTATATTTATAAACCCACTTCTGAAAAGGAATATTATTATCGGATTTCTTATTTTGCTTCAGATGCTGTAGCAACTAGCTCACTTCACTTTTTTGACTTGAAAGTTGACTATATTTTATTGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //