Array 1 1331-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUS01000002.1 Bifidobacterium bohemicum DSM 22767 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1330 33 100.0 33 ................................. CGCGGCAGTGCCGGTCTTGCTTTGGTCGAAGCA 1264 33 100.0 35 ................................. ATCGTGGAAAAGCTTTGATGGGGAATGAATGCCAA 1196 33 100.0 34 ................................. TCTGAGGGGGAGGATTGACAACATTGTCGACATT 1129 33 100.0 33 ................................. CGCGGCAGTGCCGGTCTTGCTTTGGTCGAAGCA 1063 33 100.0 35 ................................. GACATCACCTACAGTTGCGGACACACCGGACGCGA 995 33 100.0 34 ................................. TCTGAGGGGGAGGATTGACAACATTGTCGACATT 928 33 100.0 33 ................................. ACAAACCCCTCATAATCATTAAAAACCTCTTGA 862 33 100.0 35 ................................. CCGAAGGTCAGCGCAACGACACGATGTTCAAGTGG 794 33 100.0 33 ................................. GCAAATGAAGCAGGCGCTCGCACTCATCAAGGA 728 33 100.0 33 ................................. ACAAACCCCTCATAATCATTAAAAACCTCTTGA 662 33 100.0 33 ................................. TATGGAACGCGGGCGGCAGGATCATCGAGGGTT 596 33 100.0 33 ................................. GCAAATGAAGCAGGCGCTCGCACTCATCAAGGA 530 33 100.0 34 ................................. GTCCTCCTTTTTGATGTCCTGTCTTAATGTCCGG 463 33 100.0 33 ................................. TATGGAACGCGGGCGGCAGGATCATCGAGGGTT 397 33 100.0 35 ................................. AACTTAGGCAGTCAGGCGGGCGACACATACTTTGT 329 33 100.0 33 ................................. TACCGGATAAAGAAAAACGCCGCAGCTCGAACC 263 33 100.0 34 ................................. GTCCTCCTTTTTGATGTCCTGTCTTAATGTCCGG 196 33 100.0 35 ................................. CACTCCATCCGTCTTGGCGGCCACCTCGTCGATTC 128 33 100.0 33 ................................. TGCACCGACGATAAGGGCGGCGATCTCACGAAC 62 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 20 33 100.0 34 GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Left flank : TCCCTTCACAGGGAGCGTGGATTGAAATTAAAACAATGAAAGGAAACCAACAGATGGAAACC # Right flank : TTACCGGATAAAGAAAAACGCCGCAGCTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 579934-578300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUS01000001.1 Bifidobacterium bohemicum DSM 22767 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 579933 33 100.0 34 ................................. CCCTCCTTTTTGTTTCGTGGAGCGTATCTGTCGG 579866 33 100.0 33 ................................. TGAACTCGGCCGAAGTCACCTCCGTACGCACGC 579800 33 100.0 35 ................................. AACAATGGCTAGTGAGATGTCGGCGGCTAGCGCTT 579732 33 100.0 33 ................................. GAAAAGGGACTTATCAGCGAAATAGCTGAAGCC 579666 33 100.0 33 ................................. TGAACTCGGCCGAAGTCACCTCCGTACGCACGC 579600 33 100.0 35 ................................. GACAAAAACCTGCAAAACGTCCAAGGCGACAGCCA 579532 33 100.0 33 ................................. TTTAGTTGGGTGAGCTGGTCGATGCCGATGGTG 579466 33 100.0 33 ................................. GAAAAGGGACTTATCAGCGAAATAGCTGAAGCC 579400 33 100.0 34 ................................. ACCCGAGACGGCATAAGCAACCACATGAGGACGA 579333 33 100.0 33 ................................. TGATCGGCCGACACCTCGTCGACGATCCAGGAG 579267 33 100.0 34 ................................. GACGACATCATGGCCGTCCTCGACGAATGGTTCG 579200 33 100.0 33 ................................. TGGTCGGCGGACACCTCGTCGACGATCCAGGAG 579134 33 100.0 33 ................................. CTCGGTATCCGGCTCATGGTTCACAAACGACCC 579068 33 100.0 34 ................................. AGATCCGCCGGCTGCGGGTCGCCCTTGACGGTCT 579001 33 100.0 34 ................................. TAGACATGACGCAAATCGTCGGCGGGGACATCGT 578934 33 100.0 35 ................................. GCCAAAAACCTGCAAAACGTCCAAGGCGACAGCCA 578866 33 100.0 33 ................................. TTTAGTTGGGTGAGCTGGTCGATGCCGATGGTG 578800 33 100.0 34 ................................. TAGACATGACGCAAATCGTCGGCGGGGACATCGT 578733 33 100.0 33 ................................. AGGGCAGGAATACGAGGCTACTTTGCATGGCTG 578667 33 100.0 33 ................................. TTTAGTTGGGTGAGCTGGTCGATGCCGATGGTG 578601 33 100.0 35 ................................. TTGGCACGGTACCTGCGTTGCCGTTGCGCGTGCAG 578533 33 100.0 36 ................................. TGCGAGCGCCTAAGCAGCTAGGTGTTGTTCCTGCTC 578464 33 100.0 33 ................................. AGCATCAAACTGGCTTAACAACAAACCATCCAT 578398 33 100.0 33 ................................. AGCGGGTTGGACACCTCGTTGGTCTGTTTGCGC 578332 33 84.8 0 ..............G........C.....G.TC | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.4 34 GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Left flank : CTCCCTTCACAGGGAGCGTGGATTGAAATCAACAGTCCTCACGCCAGGCGTCGAGCACCTACG # Right flank : AGCACATGTTGGCGGCTGTCCAGTTGACTCATCTCACTGACGGCAAGCAGTACGCCTTGAATGCGGTGGTGGCGAACGCCATCACCCGGAATATTGGCAGTTCGGAGTCGATGACGAGGACATGCCCACCATCCGCGAACTGCTCGGGGTCTTGCGCAACACGTATCCGCGCAACCTCATCCGCAGCGCCTACTACGACGCCAAGGAACGGTTCAGCGACTTCGACATCGGCATCCCTGACCAGATCAAGAACAAAGTGCGGGCGATGATCGGCTGACCGGAATTTGCGGTGCTCCCATTGTCCGACCTGAGCGATTTCCAAGGGTTCAGCATGCCAAGCGGGCACGACGACCACGGCATCGAGAACATGTTCGAGGACAACGAGCTCGACGCGAACGCCGGCGAGGCCATCGTCGGCGCATACAAGCACTCGTGCAGCTTCATCACCATCGACCCTGCCCGCGCCGTGTGGCAGGTGCAGGGCGGGTTCAACGGTACGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 934-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUS01000003.1 Bifidobacterium bohemicum DSM 22767 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 933 33 100.0 33 ................................. ACTATCAAACTGGCTTAACAACAAACCATCCAT 867 33 100.0 36 ................................. CCTGCCGTCCGCAGCACCGAGTACGCCATGTAGGCG 798 33 100.0 33 ................................. TTTGTCCGCGAGCGCCTTCGTTCTGATCGTCTT 732 33 100.0 33 ................................. ACTATCAAACTGGCTTAACAACAAACCATCCAT 666 33 100.0 33 ................................. GACAAGATCTGCGACGACACCGGACACAAACGA 600 33 100.0 33 ................................. TTTGTCCGCGAGCGCCTTCGTTCTGATCGTCTT 534 33 100.0 33 ................................. CGCGGCAGTGCCGGTCTTGCTTTGGTCGAAGCA 468 33 100.0 35 ................................. GACATCACCTACAGTTGCGGACACACCGGACGCGA 400 33 100.0 34 ................................. TTCGGGAAAGGTGCCACCATGACTCATTACATAG 333 33 100.0 34 ................................. TGAGACTTGCCCTCGCTGTTGATGATCGCATTGG 266 33 100.0 37 ................................. CGGCAAACCATGTCGTATGATGACACCAGGTAGAAAA 196 33 100.0 34 ................................. ACGGTCTCGACGAACTTGTTCTCGTGCCGTGACG 129 33 100.0 34 ................................. TGAGACTTGCCCTCGCTGTTGATGATCGCATTGG 62 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 14 33 100.0 34 GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Left flank : CTCCCTTCACAGGGAGCGTGGATTGAAATTTTTTCCGGCCGTTGTCAGGCCATTACGGATTG # Right flank : TAAATACGACGGCGACCGGCTCGCCTATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4149-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUS01000004.1 Bifidobacterium bohemicum DSM 22767 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 4148 33 100.0 34 ................................. ATGCCGCGAGCTCGAAGCTCAACCCGTACAACAT 4081 33 100.0 35 ................................. CATACCCTTATTGTATCTCACAGGCTACACTATGT 4013 33 100.0 33 ................................. TACTGCCCCCAATGTGGCAGACACCTAAAGGCC 3947 33 100.0 34 ................................. ATCCAAACCGAACCATGCCAATACTGCGGCAACC 3880 33 100.0 35 ................................. CAGACCATCGCCAAGGTAATCCACGCCCTCGGCGG 3812 33 100.0 33 ................................. GCGATCCAGTGGCAGTGTTTACTGGATGTCACG 3746 33 100.0 33 ................................. CCACGGGTCGCGGTTGGTTGGTGCCGGTCGATT 3680 33 100.0 35 ................................. CAGACCATCGCCAAGGTAATCCACGCCCTCGGCGG 3612 33 100.0 33 ................................. GCGATCCAGTGGCAGTGTTTACTGGATGTCACG 3546 33 100.0 33 ................................. CCACGGGTCGCGGTTGGTTGGTGCCGGTCGATT 3480 33 100.0 34 ................................. GTTCCCCTGCGGCTCCTGTGCCTCGTGTTGAGCG 3413 33 100.0 34 ................................. TGGGTGTCGGCCTGTACTTTTTCCACGTCGGTTT 3346 33 100.0 34 ................................. TCCGAGTCTACGGCATAGGGGATTACCGTGCTGA 3279 33 100.0 34 ................................. GATTTCGATGGCTTGGACATGGGCGACCTTCAGG 3212 33 100.0 34 ................................. CTCACCGACGACGACTGACGGCATCCGATAACTT 3145 33 100.0 35 ................................. TCCGGGTTAGGGTTCGCCATGCAAGGTTGCTTCGT 3077 33 100.0 32 ................................. CAGTCGAATCCTTACGCTCGACAAGACATTTA 3012 33 100.0 34 ................................. CGAACACCACATGTACAAGTAACTTGAACATTGC 2945 33 100.0 33 ................................. CAATGCCGGTACGCTATTAGCGTAAACTCAGAT 2879 33 100.0 34 ................................. TAAACGACTTGCCTCCGACTCCTGGAACCCAATC 2812 33 100.0 34 ................................. TAAGACGGGAAAGGATAATTCGTTGAGGTACTTG 2745 33 100.0 33 ................................. TTGACATCCCCACCGATCGCCATGGGTGCGATG 2679 33 100.0 34 ................................. AGCGAACTCGTCCCCAGGAACAACGAGGTCGACT 2612 33 100.0 35 ................................. AGTTGGTTTTGCTTAACGATGACGGTTCAGTTTAT 2544 33 100.0 34 ................................. ATCATGGCCAGCTGCAAACTCTGGGAAACACAAG 2477 33 100.0 33 ................................. TCGACCATTCGAGGTTTTTTCGTCGGCATTGAT 2411 33 100.0 34 ................................. AGCATACCTCTCGGCCAGCGTGCCACGGACGCGA 2344 33 100.0 34 ................................. CTGTTCGTGCCCAACAACAAGGGCACGCTGGCCG 2277 33 100.0 33 ................................. CTTTTCCTGGTTGTCGGTCTTGATGCCGGTGTT 2211 33 100.0 34 ................................. AGGTCGGGGAGGTTGAAGGTCTGGTTGCCTTTGG 2144 33 100.0 34 ................................. ACGGGATCGTCCTTGAGGGCGATGACGGCCGCGA 2077 33 100.0 34 ................................. ATTTTGCCGCCTCCTCGGTGATGGTGATGTGCGC 2010 33 100.0 34 ................................. TCCAACGCCGGGTCGATTCTATGGAACGCCGGTG 1943 33 100.0 34 ................................. CTGGCGCAGCGAAGCTGGTCGACGATGTGGGGAT 1876 33 100.0 34 ................................. AACACCTGGATCACCAAACGCGCCAAAAGCCTAC 1809 33 100.0 34 ................................. GACGGCGACCCGGTGACGTGCGAGGTGCTGCCGC 1742 33 100.0 35 ................................. CACTCCATCCGTCTTGGCGGCCACCTCGTCGATTC 1674 33 100.0 33 ................................. TGCACCGACGATAAGGGCGGCGATCTCACGAAC 1608 33 100.0 33 ................................. CCATTGCGGGGGACGGTCAACGAACGCGAGCAG 1542 33 100.0 34 ................................. GACCAACGACAGCATCACCATGTGGGGCACCATC 1475 33 100.0 34 ................................. GTCATCGCGCAGACCGCGTTCAGCCGACTCACCG 1408 33 100.0 36 ................................. TTGACGATCCGCACGATGCTGCCGCCCCAGGCGGTC 1339 33 100.0 36 ................................. ATAACGGGTAATTATTTACTCAAACGAGTGTTTTAA 1270 33 100.0 34 ................................. AATTCGGTCTGCAGGTCGACCCGTATCGCGTCCG 1203 33 100.0 33 ................................. CCAAGCCCACGAGCCCGTCTCCCAAGCCCACGA 1137 33 100.0 33 ................................. GCTTCCGGCTACAATATTGAGCATACCGGCTGG 1071 33 100.0 33 ................................. AGACGACCGCTAGATATTATCTTAGACCTGAAT 1005 33 100.0 36 ................................. CGGTTTCCAGCCGTTTCCGGCCGCGTGCTCGGGTTC 936 33 100.0 34 ................................. CTTGGTCTTGGTCGTGTCGGGCGTATCAACTTGT 869 33 100.0 35 ................................. GCGTCGTGATGCTCTGCTCGCGTCTGCCTGCGGCC 801 33 100.0 36 ................................. TGCGAGCGCCTAAGCAGCTAGGTGTTGTTCCTGCTC 732 33 100.0 34 ................................. AGGTCCTTGGCGTCGGCTCCCGCCTTGCGCAGGG 665 33 100.0 33 ................................. AACGCAATCAGAAATTTCTGGAATTCGACAATC 599 33 100.0 34 ................................. ATCCCGACCCTGACGACCAGGCTCAAGCGCACCG 532 33 100.0 34 ................................. ACCCTGGCGGACTCATGGAACCTGGGCTGGGACT 465 33 100.0 34 ................................. CTGTATTTCATTTTCCGTTGGGAGCGGGTCTCTC 398 33 100.0 33 ................................. AACGCAATCAGAAATTTCTGGAATTCGACAATC 332 33 100.0 34 ................................. TTCGGGAAAGGTGCCACCATGACTCATTACATAG 265 33 100.0 36 ................................. TGCGAGCGCCTAAGCAGCTAGGTGTTGTTCCTGCTC 196 33 100.0 33 ................................. ACTATCAAACTGGCTTAACAACAAACCATCCAT 130 33 100.0 33 ................................. GACAAGATCTGCGACGACACCGGACACAAACGA 64 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 100.0 34 GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Left flank : TGGCCAAGGCTTGCATCAAATTTGGTCAGCGTGTTCAAAATAGTGTCTTCGAGTGTCTTGTTTCGCCTTCCGATTTGCTTATTCTAAAGGATGAGTTGACTCAAATCATCGATCCGGAGCAGGATAGTTTACGGTTCTATAATTTGGGTGCTAAATATTCGAACCGGATCGATTATATTGGGCAGGTTCGGCATCTTCCTATGGACGAGGTCATGATGATTTGAGGTAAACCGTTCTGGAGACAGATTCTATTTTGTCGGATAGATGCGTGTGTCGAGAATCGTCACTGGGTGCGAAAGTAAAGCGCTCATGATTTCCTTGGAGGTTCGCACCTTCCGGGCATGATATTTTTCGGATTTTCATTTTAAGTGATAAGTTCGATGGCTGCTTGATAACATAAAAGAGTATTAAAGGCGACTCCGTTGAGACAAAATCGTTGGAGTCGATCAATGCTACAATGGGCATGTTCATATTTTGAAATATTTGATTTCAAATGTGCA # Right flank : TCTGTATTTCATTTTCCGTTGGGAGCGGGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACAGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //