Array 1 101321-100705 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOC01000137.1 Rhodoplanes piscinae isolate Rhod_genome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 101320 37 100.0 34 ..................................... GCTGTTCTACCCACCCCACGTGAACGAAGACCGC 101249 37 100.0 38 ..................................... CCCTGGGCTCCCGCCTCAAGCGCCGCACGGATCAGCGG 101174 37 100.0 37 ..................................... TCTGCGACCACCACGGGTCGCGGATATTCCCTCCGCT 101100 37 100.0 34 ..................................... AGACCGGTCATGCCGGTCGTGTCGAGCGCGAGGC 101029 37 100.0 33 ..................................... AACCATCTCGGGCGCAGCCGTCAAGGCAGTCAC 100959 37 97.3 40 ..............A...................... GACGACGACTTCGCCACGCCGACGGCGCGGACGAAGTCGG 100882 37 100.0 33 ..................................... AACCATCTCGGGCGCAGCCGTCAAGGCAGTCAC 100812 37 97.3 34 ..............A...................... CCATGGCTCCAGCACTGACGATTTGGAGCCGATC 100741 37 97.3 0 ................T.................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.1 36 GTCTGCCGACCCTCCGCGACGTGAAGCGGATTGAAAC # Left flank : CAGCGCCGTCGACAGCGCCGCGAGGCGCTCCGGCGCCCCGACCGCGAAGGCCGTGACCGTCATGCCGTCGCCGCCGGCGGCGCCTTGGTTGCGCCACACCCGTTGCCAGCCGTCGCCGAGGCCGGCCGGGGTGGTGGCCGCCAGGAACAGGGCCTGGCCGTCGAGGGGCAGTCGCTGGTGATCCGGGCGGGCCATGGGTCTTCCCCGAGTCGAGCGCGCGGTACCGTGCTGAAATTGCACTGGCCAAAAATTCTCGCCACCTGCGGCTGTCCCGGGCGGCGCTGTCGAAGGTTATAAAACACCACCACGATCATTGATCGGAAAGGGAAATCTTGGAAGACCCATGCTGGAAAATCCATAAGCCTTTGTTTTGAAAACTCGAAATGCCGTTTCAGGGGACCTTGTTCGTGCTTTGTGCGATCGGCCTTGACGGCCCGGCCGGGGTCATGCTGGAAAGCCAGCTTAATTCTTCAGCTTGACGAAAGGGTTGGGAAGGAACA # Right flank : CAGGTCGGAGCAGTCGCCCGACAGGTCGGAGCAGGTCTGCCGACCCTCCTGTCGGCCTGTCACGACATTGACGCGAGTCGAGCGTGCCGCTACCCTTTCCACGTTAGGGGTTGCGGGGATTTTTCGATGCCCGAGCTGATTGTCCGGGTCGAGGCGGTCAATTTTTCCGCCACGATCGACGATACCAATGATTTGTCGACCATCCGGGGCGGCGGGCTGGCCGCCCTCTATGTCGCCGAAGCGGTCGGCGCGGTTCTGCGACAAAAAGGTTTTGAGCCGCGTCTGGAGTTTCGCGGCGCGTCGCAATGCGCCTTTCGCATCACCACGACCACGAGCGAGGACGCGGCGGCCGCGGATATCGAGCAGACGATCCGCACGGCGCTCGCCCGCGCCGACGGACGCGACGCCAAGCCCCCCTACAGTGCGCCCCCGCACGCCGTGATGATGCATGTGGTCTCGGTGGCGCCGATCGAAATCCCCGCCGGCACCGGCGAGAATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCGACCCTCCGCGACGTGAAGCGGATTGAAAC # Alternate repeat : GTCTGCCGACCCTCAGCGACGTGAAGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 1 271-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOC01000158.1 Rhodoplanes piscinae isolate Rhod_genome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 270 36 100.0 35 .................................... CCTTCGTGGGCGAACGTGAGGCCCAAGGCCTCGGC 199 36 100.0 36 .................................... CACGCGGCCGGAGTAGGGGTTCACCTCGTAATCGGC 127 36 100.0 35 .................................... CCTTCGTGGGCGAACGTGAGGCCCAAGGCCTCGGC 56 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 36 GTCTGGCGACCCTCCGCGACGTGAAGCGGATTGAAA # Left flank : TTCGCCATCGGCGACATCAACACCTATCCGGGCAAGCTCAAGCTGATCCTCTCCGGCTTCCACGAGGGCGCCCTGATGGCGCAGGCCGCCGCCCGCTACGTGTTCCCGGATCGCCGCCCGGTGTTCCAGTACACGACCTCGTCGACCAGCCTGCAAAGGAAGCTCGGGGTCGAGTGACGGAGAGCATCGTCCGCCGACGTGGGCTCCGGTTCGCCGTCGAGAATGCGATCCAATATGAACTTCTGGAGCGCGAGGCCCCGGGCGCGCCTCGCGGAACCCGGGACGGGCGCGCAGGTGCGCGCCGGCAGAGCCCTTGTTGTTTCAGGGGTTTTTCGTGGGACCCATGCTGGAAAATCGCCAAGTCCATGATGTAAAAGGCGAAAACGCCCTGCGATGGGGGCTCGTTCCGGGTTTGTGCAAAACCCCTTGACGGCTTCGGCCGGGGCTTGCTGGAAACGCCACCCAATTCCTGAGCTTGACGCGAGGGTTGCAGAGGATCA # Right flank : ACACGCGGCCGGAGTAGGGGT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCGACCCTCCGCGACGTGAAGCGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 4718-4469 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOC01000058.1 Rhodoplanes piscinae isolate Rhod_genome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4717 37 100.0 30 ..................................... CCTTTCTCATGAATCCCATGACCGACGATC 4650 37 97.3 31 ....A................................ GTTCAAGAACGGGTCCATGGTGGTCTCCTTG 4582 37 94.6 40 ....A.........T...................... TGTTCGTCGCGGCATCGACGCACGACGCCGTCTCGTACCA 4505 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 98.0 34 GTCTGGCGACCCTCCGCGACGTGAAGCGGATTGAAAC # Left flank : TTGAAACTGTTCGTCGCGGCATCGACGCACGACGCCGTCTCGTACC # Right flank : GCTCACCCCCAGCATCATGCGCCGCATCCGAACTCGGTCTGGCGACCCTCTGCCCAATACCAACGGCAGCACTCTCGGACTGCATCCTCCGGCACAAGGCCGGGCACGACGAGTCAGCATCAGCGGCTATCGGTATGAGAGAGTATGTCGCGAGGCCTCGTGCCCCGGACGCGGCGCGCAGTGCCGCGAGCCGGGGCCCAGAGCCGCAAGCGCCGTGATCGCCGCTCCTGGGTCCCGGGTCTCTGGCGCGTCGCGCCTGCGCCCGGGACACGCGGGATGCGACCAGATAGCTCGAGTCTGCCAGCCCTCCGCGACGTGACGCGGAGGGTCGCCCGGCGTGGCTCGCGCAGCGGGATGGCCGGGACGAGCCCGGCCCTGACGAAGAGAGCGGTCGGAAACCGCTGCCCGGTCAGTACACCTTGCCGATCATCTTGATGTCGGCCCACACCTCGCGGACCGTCTGGGTCATCTCGATCTTGCGGTCGGTATACCAAGTGTGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCGACCCTCCGCGACGTGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 15394-3071 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWOC01000133.1 Rhodoplanes piscinae isolate Rhod_genome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 15393 37 97.3 37 ....................................T AGCCTCATGGACTTGAGCGTGCCGAAGCCCAAAGCTT 15319 37 97.3 39 ....................................T GAAGATGTCCGGCGTATGCGGCTTCGGCTGGCTCGCCCG 15243 37 97.3 38 ....................................T ACGTCACACCTGAAATGGCGGCGGACGACGAAACGGTC 15168 37 97.3 38 ....................................T GCGTTGACGACAATCGAGACGGCGATCGGGCGGTTGCC 15093 37 97.3 38 ....................................T ATCGACCGCGGCGCCGTGGTCACCTGCAAGCTCTACGC 15018 37 97.3 39 ....................................T CACGCACGCCCATTGGCAGCACGCCCCCGCGTAGTACTC 14942 37 97.3 38 ....................................T CATGATCGGCTGGTGCGTGACGTAGAAACGCGCGGCGT 14867 37 97.3 37 ....................................T TTGCCGCCGCCGGCCTTCCCGCTGCCCTTGCTGCCCT 14793 37 97.3 39 ....................................T CCCAGCCTCGGCGTGGTGCCGGAGGGCGGCGAGTATCAG 14717 37 97.3 36 ....................................T ATATGTCAGGGGCACTCGGAGAGCGTGTTCCGGCGG 14644 37 97.3 36 ....................................T TCGAGACATGCTCGAAAATTCGGTCAAGAAAGAGGG 14571 37 100.0 38 ..................................... GATCAGGTAATCAGGGGGGCATCAGGGTGGCATGACGG 14496 37 100.0 36 ..................................... ATCCCGTTCGACCGAGAAGAGGCCGAGGACATGATC 14423 37 100.0 37 ..................................... TCGAAGTCGCGCCGCACCGCGAGGCCGAGAATGCGAC 14349 37 100.0 37 ..................................... GGTGCGTTCGACGAGTGGCCGGAAAAACAAGACGGGC 14275 37 100.0 36 ..................................... TTTCTATTTTCGTATATTTTCGTATATTTTTGTATA 14202 37 100.0 36 ..................................... CGCAAAATCTGCGGTGTACGTTGCCGCCATGAAACA 14129 37 100.0 36 ..................................... GTCGGAGAAATCGCCGACCTTTGGCGCGGTGCGAAG 14056 37 97.3 34 ...........C......................... CCCGCATATTGGCCGTCGATGATCTCGGCATCGA 13985 37 100.0 37 ..................................... TTCGTGGCGTGTTTAGGATGCTCGCATCGAAGTTGAG 13911 37 100.0 36 ..................................... TCGAAAATAAGTCTGAGATAGAGGCTTAATCGGGTC 13838 37 97.3 36 C.................................... TCGTTGATCAGCTCCAGTTGCCTGTCGTTGACCTGC 13765 37 97.3 38 C.................................... GACAGTAATCCTAATCCGGCCGTAATTGCCGGAAAAAC 13690 37 100.0 36 ..................................... AACCGAACCAGATCGTCCCACGACCAGAACTTGAGA 13617 37 100.0 39 ..................................... GAAAACCTATGAATTACCAATTCTTAGACGTTGGTACGC 13541 37 100.0 37 ..................................... CCGCCGAGCAGCGTCGTCCCGCGGAACAGGTTGGCGA 13467 37 100.0 36 ..................................... TAGGGTAGCCGCTCGATGAGCGTCAGCGATCCGGTA 13394 37 100.0 36 ..................................... ACATGCACCAGCACACGGCCTCTGGAGGCAACGAGA 13321 37 100.0 36 ..................................... GATTATTCGCGCGACGCTGATCCTCGCCTACGAGGC 13248 37 100.0 39 ..................................... GTGTCTAATTCGGTATAGGTAAGATTACCGCCTTTTCCG 13172 37 100.0 39 ..................................... GAGTACGGTAACGTTAACGCCATGTTGACACCTTGGGCG 13096 37 100.0 41 ..................................... GACAATAAGTTGCCGCCGGTTGACATCGAAGGTCTGGCCGA 13018 37 100.0 36 ..................................... ATGTATTTTTCCTTAATGACGACTAGCGATAATACC 12945 37 100.0 35 ..................................... GCCGTATCATTATCCATTGACAATCGAATATTTTC 12873 37 100.0 38 ..................................... CGGTTCGGGCAGTAGAGCTTCTGCACCACCGTGTGGTC 12798 37 100.0 38 ..................................... TACAAAATCTACTGATTATGATGCACCGGGGTATTAAT 12723 37 100.0 35 ..................................... ACCATTCCGGAAGATCTGATCGGGAGCCGGTTCGC 12651 37 100.0 35 ..................................... GCCCACAGGGGCGCGGCTGTCGTTTCCGCGCCGCG 12579 37 100.0 36 ..................................... GCCTCGTAGGCGAGGATCAGCGTCGCGCGAATAATC 12506 37 100.0 37 ..................................... CGAGAGCCGCCACGACGGCAGCCTCGGCGATCGGACG 12432 37 100.0 36 ..................................... ATCGGACCGTCCGAAATCCGAAGCGATGCCGCACTC 12359 37 100.0 41 ..................................... GCTGAATATCCGACGTCTCGACAAGCTTCGCACCGAGTGCG 12281 37 100.0 36 ..................................... TCGTCGACACGCCGGATGCCGTGAAGCACCGACGTG 12208 37 100.0 40 ..................................... TAGAAGATGCCCTTCGTGAGAGCGGCCAGGATCGCCGACT 12131 37 100.0 40 ..................................... CCCAACAACGCCGCGGCGCTGCCGCAGGCCGCGGAGTGAC 12054 37 100.0 35 ..................................... GTCATCCCCACCGCGCACGCAGACGCGATGTGCCG 11982 37 100.0 35 ..................................... GAGCACGTCTCCGCCGTGTCGGGCGGCCTGAAGCG 11910 37 100.0 38 ..................................... TGAAGGATCTTCAGGAAGCCACGCTCGAAGCCGGACGC 11835 37 100.0 38 ..................................... GACAGGACGAGGTCCCCTGCGAACTCAGCATTTTCGGG 11760 37 97.3 36 A.................................... CAGCACGCGGCGACACGTAACTGCGATGGAACGTGG 11687 37 97.3 37 C.................................... CTTGTAAGACCGTGTCGCCGAAGATATCGGCAATTAA 11613 37 97.3 37 C.................................... AATATACAGGCCGTGGTATCCGCCACATGACACCGGC 11539 37 100.0 37 ..................................... AAATGCTAATTAACGAGGGGTATATCGTACCTCCAAT 11465 37 100.0 37 ..................................... TTGTAATACGGTGAAAACCGAGCTGTTGGGCATTGAG 11391 37 100.0 35 ..................................... ATCGAAATGATGGTTAAGTTTTCGTGCCTCTTCCG 11319 37 97.3 36 A.................................... ATCGCAATCGGCGGTAACCTTTATGTTCAAATGACG 11246 37 100.0 36 ..................................... CGAACAATGCGGAGCATATAATCATCCGCGTGTCAA 11173 37 100.0 40 ..................................... ACGAGCCGCTACAACCCGTGATCGACGACGCGACGGGCGA 11096 37 100.0 36 ..................................... GCCAGCGTGTGGCAGCCTACTTCGTCGGCGGCGTCT 11023 37 100.0 39 ..................................... GCGTGTGCGGGCTTCGGCTGCGGAGCCGGAGCCGGGGTG 10947 37 100.0 37 ..................................... TGAATGTTGATGCCAGCTCCGCGCAACCACTCGACAA 10873 37 100.0 36 ..................................... GCGCATCAGCCGCATTACCGTTTTCTGTTATACTTG 10800 37 100.0 36 ..................................... GACGTAGCCTGAGTGACAGTGCCACCTGCACCAGTG 10727 37 100.0 37 ..................................... GGGCGACGAATGGCGTGATCATCGCCGAAGCATGGCA 10653 37 97.3 36 C.................................... GTGGCGCTACGAGGATCATGGCGGCCCGAAGCCGAC 10580 37 100.0 38 ..................................... AGCATATCTTTTGTCGGCTCGTCGGCCGGTATAGTCGG 10505 37 100.0 36 ..................................... TACCAATCGAAATTTGAACACTATCGTAGAAAATTT 10432 37 100.0 35 ..................................... AAAATTGCCCAACCTGTAATTCGACATTAGACGAA 10360 37 100.0 37 ..................................... CTCTTGGCCTCTGCGGCCTGCTCGGGCAGCGGGTAGA 10286 37 100.0 37 ..................................... TCATTCAAACATCGAAACGGAACACTCACACAAAAGG 10212 37 100.0 35 ..................................... TTATCCATGTAATTTGTGAACCCGGTGTTGGTGCA 10140 37 100.0 37 ..................................... GAAAATGGCAGTTGGCATTGGGCGGCAATTAAGGAAG 10066 37 100.0 36 ..................................... CTGCCCGCGGCCGCGGCGCGCGCCGGGTCGACGTTA 9993 37 97.3 37 T.................................... CTTTGAAGTAAGATATCCTGATCTAAAGGCGGACAAG 9919 37 100.0 37 ..................................... CATTAAAAAATACTCCTGTGATTAATTAGTGAACCCA 9845 37 100.0 40 ..................................... GCACAAACAAGGGCGATATTATATCGTCCACTTCAAGGAA 9768 37 100.0 35 ..................................... TTCTCCAATTTCATTATAAACAAATTTTGCTCTGT 9696 37 100.0 35 ..................................... TCGTGAGCCTCCCGTGTGCGGCGCTCGCGATCGCT 9624 37 100.0 36 ..................................... ATGTAAACAAAAAGTAAGACGGTCACACAAATTAAC 9551 37 100.0 37 ..................................... GGCGCATCAACCGGGCCGACTCGCGCCATGCACCGCG 9477 37 100.0 37 ..................................... CGGTCTCGACAAGCTTTGACCCGTTTCCGGTTGTCGA 9403 37 100.0 37 ..................................... TCGCTAAACCGTAACAATTCAGATACGTCAGCAAGGT 9329 37 97.3 35 T.................................... GCGAGTATTTCGGCCGGCACGGTGGGCCTGGCGTG 9257 37 100.0 39 ..................................... GCGCGACGACAGGCCGACGTCACGGCGAGCGCAGCGGGG 9181 37 100.0 37 ..................................... CCGCTGTTCTGGCCGCTTGCGCCGCCACCGCCGCGCG 9107 37 100.0 36 ..................................... AACTCCTCGAACGCCGTCATCAGGCCGTTAACGGCC 9034 37 97.3 41 T.................................... GAGGTACAAGCACCCGACCTCGTCGGCCTGGGTGGCGTAGC 8956 37 100.0 38 ..................................... GAGCATCCGCAGATAGTGATGCGGAATGCTGACGCGAT 8881 37 100.0 38 ..................................... CGGGATGGTTTCTTGGCATCTCTCCACACACATCACGG 8806 37 100.0 35 ..................................... TACTTCTCGCCGGTGGGCGAGGTGGAACACTTCCG 8734 37 100.0 38 ..................................... GTTCGAAAGCGTTAATATACGATCCGATGGTTTCGGCC 8659 37 100.0 37 ..................................... ACCTCATAGTCCGCCGAATTTCGATAATGAGCTATAT 8585 37 97.3 38 T.................................... AACGTGGTCACGTCGAACTTGCTGCCGCTGTCGTCCAG 8510 37 100.0 37 ..................................... CAACAATGTGCTTGAGGCTGATTGGCGCCACTGCACC 8436 37 100.0 37 ..................................... GTGTCCGCGTCAGCCGCGCGGAGGTCGATCGTCTCGG 8362 37 100.0 37 ..................................... AATTCCCTGTCGGAAGACCTCGGCGGCTGGCGCGAGC 8288 37 100.0 37 ..................................... AGCCTCTCCGAATAGATGGGCCTCGGCGCCGGCGCCG 8214 37 100.0 36 ..................................... ATCGCCTCGTGGTCGCCGGACTTGCGCTCGACCACG 8141 37 100.0 36 ..................................... CTGACCAGCGGCGACAGGTAACCGTCGTCGATGCCG 8068 37 100.0 38 ..................................... GATGTCCGCCTTCCATTGCCCAAGGGCGCGGCGGGCGA 7993 37 100.0 41 ..................................... ACGGCGAGGTATAAGCACCGCCTCAATCCCGTCGCGTGCAT 7915 37 100.0 36 ..................................... GACGACATCATTCGCGACATCGGCATCACGGCCGAT 7842 37 97.3 35 C.................................... TCCCACTTGAACCCCTTGATCCCGACCATATACGA 7770 37 100.0 37 ..................................... TCCACGACGATCGCCGGCCAGATCGCGGCCAAGCTGA 7696 37 100.0 38 ..................................... CGTGCCGCGCTCGGCGTCGTCGTCATCGCGCCAAACAG 7621 37 100.0 36 ..................................... ATCACCATGGAGCGCCGTGACGAGCTGCTGCAGCGC 7548 37 100.0 37 ..................................... ATCTCGCTTCGAATCCCGCCGTGGCCGGAGGTGAAAC 7474 37 100.0 36 ..................................... TGCCCAACCAGATGATGGCCCCACACGCGCTCGCGA 7401 37 100.0 35 ..................................... ACCTCGGCCCACGCCTCCACGAGGCGGGAGGACGA 7329 37 100.0 38 ..................................... GACCACGACGCTGGCACTGGAAATACTGCATCGATGCG 7254 37 100.0 36 ..................................... CGGCCGAGCCATCTTCGACCTCGCGTTGCGCCGGGA 7181 37 100.0 37 ..................................... CAGCGACGACGATCGTGGTGCCGGTTGAGCTCGACAC 7107 37 100.0 37 ..................................... AGATTGCGGGAGAGGTGAACGCCGCCGGCCCGGGCCG 7033 37 100.0 39 ..................................... CGTCCTGATCCCACACCGATGAGCAGGACGGGCAGGTCG 6957 37 100.0 36 ..................................... GCGAACTCGCACGCCTCGGTGGCGGTCCGAAACCCG 6884 37 100.0 36 ..................................... GGATCTAACCAGCAAGCAAGCTCAGAACTCGGGGCT 6811 37 100.0 35 ..................................... GTCGAGAACCCATAGTGATCGGCCACGGCTTGCAG 6739 37 97.3 39 C.................................... GGGATGCCGCGCCTCGGGTGGAAGTCCCTTATGTCGCGC 6663 37 100.0 39 ..................................... GATCTCGGCCGAGATCGCCGCATGGGCGAGGTCCGCCGC 6587 37 100.0 36 ..................................... GCGACGATCAGATCGCCCACCGCGTAGGTGGTCAAC 6514 37 100.0 35 ..................................... CCGACGATCGCCTCCGCGATTGCTCAGAAGGGGTT 6442 37 100.0 36 ..................................... TAAGTGGGTCTGCAAAACCGTTTACGCCGGTTCAAT 6369 37 100.0 37 ..................................... TTGACATCTGGTGCAGCCTCGTCGCTGTCATCGACCT 6295 37 100.0 43 ..................................... TGCTTGGCCAGCTTGCGCCCCCCCGCCGGGTTGGTCTCAACCA 6215 37 100.0 38 ..................................... ATGTGTTGCGCTTCATCTCGGCCGAGCTGGCGCTGGTC 6140 37 100.0 36 ..................................... TGAGCCAGCGAGACCTGCACTTGCTCGGCTGTCTCT 6067 37 100.0 36 ..................................... CAGCGGCGATCTTGGTGTCGCTGTCGCCTCCGTCCA 5994 37 100.0 35 ..................................... AACAAGACCCCGAAGCCTGAGAAGCTTGAGATCGC 5922 37 100.0 40 ..................................... CAGGGCGGAACGCAACAGCATGGCCGAGCAGACCCAGCCC 5845 37 100.0 38 ..................................... CTTAATGAACTTGCTGATGAGCACCCGGTTGCTGGAGC 5770 37 100.0 39 ..................................... ATTTAACCAACTTCGGTCTGATAAGAGCGGAACGGTTAC 5694 37 100.0 36 ..................................... AACAACACCTGATCCTCACCATCGTAGATGGTGTAA 5621 37 100.0 35 ..................................... CGCGGCAGGAACAGCGCGGCCGGCCTGCCCGGCAC 5549 37 100.0 37 ..................................... AAATTGATCGATGAACCTCTCGTGGGGACACCGATCG 5475 37 100.0 40 ..................................... CTGACCGTGCGCTTCAACAGGCGGTGATTACCGCCAAGCT 5398 37 100.0 37 ..................................... TGGTGTCGGGGAGGGGGCGAGCGCAGGGGCCGGTGGC 5324 37 100.0 37 ..................................... GAAGGTGAGGCGCAAGGAAAGCCCTAGGGCCTGACTG 5250 37 100.0 37 ..................................... CGGATGTCCGCGTCGCCCGTCGCGTTGAGCCCTGCCG 5176 37 100.0 35 ..................................... AATTAATACTTTCATCAGGCACCATTAGTAAATTT 5104 37 100.0 35 ..................................... TGCAATAGCATTGGCTTCACGTTCTAGCTGGAACA 5032 37 100.0 35 ..................................... TCGTCATCCAGGTGGCGATCGTGCGGCCGGGGCCG 4960 37 100.0 39 ..................................... GGTGACAAGCTACAATTGACGGCGGACGGCACCATCACG 4884 37 100.0 36 ..................................... CAGGGCGTCAAGCGGTACGATGTCCTGCGGCACGAA 4811 37 100.0 37 ..................................... GACGAGCCGGCAGCGCTGTTTCGGCATCCCGACGAAG 4737 37 100.0 38 ..................................... CGACCCACCTGATTCATGATGTTTCCTCCCGCTGGCGC 4662 37 100.0 37 ..................................... CGTGACCCCGCCACCAGCTCCCGTGGCGTAGCCGATG 4588 37 97.3 37 C.................................... GACCTCCGGATGTGGACGATGATGCCATCCGGGGTCC 4514 37 100.0 37 ..................................... TATACAATAACATTAAATAATTGGGAAACTCCTGTAG 4440 37 100.0 37 ..................................... CCGGATGCAGGGTCACCCAATGGTCAACGCGCTCAAA 4366 37 100.0 37 ..................................... GCAGCGGCGCCGACCTTGCGCTTGGGCGGCACCGCGA 4292 37 100.0 38 ..................................... TATGCGAATGCGGCCCCGGTGACGGGATTGCCCGCCTC 4217 37 100.0 36 ..................................... TCGACGGCAAAATGGGCTAGATACCTATACTCAATC 4144 37 100.0 38 ..................................... TTCGCAAGAGGTTAATACTACGTATAACGATTACGGAG 4069 37 100.0 36 ..................................... CCTCTCGATCAGGCCGACTCTGGCCGCCCCGCAAGG 3996 37 100.0 39 ..................................... TCGAGCGCGGACGCAAGCGCGTGCATCACGTCGAGATAG 3920 37 100.0 38 ..................................... ATAGTCACGAGCCGACGAAAGAAATTTTGCGCCATCGC 3845 37 100.0 36 ..................................... GTTAACCGTATGTTGGGGAGGCTGATTTTCGTGGTT 3772 37 100.0 35 ..................................... TCCTGCCTTCAGCGCGGCCCCGAGGCGCGGGCTTG 3700 37 100.0 37 ..................................... GTCGCCATCACGCCGCCTCGCGCCGCCCGACGACCGC 3626 37 100.0 37 ..................................... GTCGCCATCACGCCGCCTCGCGCCGCCCGACGACCGC 3552 37 100.0 37 ..................................... GAGACGGTGGGGTGGGTTAGCGGGTTTGTGGCGCCGC 3478 37 100.0 38 ..................................... CGGCTGAATTCCGCCCCGCCATTGCGCTTCTGGACGGG 3403 37 100.0 36 ..................................... CATGTTATCGCAGCGCAAAAGCTTGACCGTATCGAA 3330 37 100.0 38 ..................................... TCGTATTCGCCGCGAAGATCACGCAAAGCGCCGCGTGT 3255 37 100.0 39 ..................................... ACCTTGGCAAGACCCCACACAATCTGGCCGCCCTTAAGA 3179 37 100.0 35 ..................................... CACCACTGCGCGTTCTCGCACACTTCGAACCAGTC 3107 37 78.4 0 .........C.C.................TCC.GGC. | ========== ====== ====== ====== ===================================== =========================================== ================== 167 37 99.5 37 GCTTTCCGCGGTTTCACCGCCGCGGCCTCATTGAAGC # Left flank : GTCCCGCGGTGGCGGGCGGCCGATCTTCGCGTGTGGCGCGACCCGGCGTCGCGATGCCCCACCTCGCCGACCGCGATGGTCGCGGTCGGCAAGACGGAGCGGCGCGCCGCCACCGAGGCGGCGGGACGGCCGCTCCCAAGGGGTCATGGAAGACCAAACCGGCGATATGGCGCGCCCCGGCGGCCGGTTGGACCGAAGGGGCCGGACCCAGCGAGCCAAGGGCCTGATGCTGCGGATTTGATCGCCCAGACCATGCCGCGACCTCCCAGGGTGTTATGATGGCCGGGCGTTGTCGGCAGGTCGCCGCTGCCGCGCGAGCGCTGCGGTGGCGGCGGAATCCCGGGGACCGCTCGCGGGCGGGATTCGGCTTGCACCAGCGCGGGTTGTTTGACATCGTGAAGGATCGGAGCAGCCCTTCGGCGGGCGCTCGGCCGTCCATTCCGGGAGCGCTCGCAAACGCCGTCGAATCGCTTGCCGCTCCGGCGGCTTGCAGGCAGACG # Right flank : CGGCGACCGTGCGGAGATCGGCCCCGCGCTCAGCGGATCGCCCATTGCTGCGACAGGCCCCAGCGATGCGGCGCGCCACCACCCGCGGTGCCGCCGCCCGGGGTGCCGCCGGCCGGCACCGCCGCCGGGCCGGCCGGGCCGGCCTCCGCCCGCTGGTCGGGCGCCGCCAGGATCAGCGCCCAGAACACCTTGTACTTGGTGCCCGGCGCGAAGGCGGCCGCGATGCCCATGCGGGTCGCGTCCTTGGCCAGCATGTTGGCGCGGTGCGGCGGCGAATCGCGCCAGCCCGAGAACGCCTCGGCGAGCGTGTGGTAGCCGGCCGAGACGTTCTCGACCGCCATCCGGGCGTCGAAGCCGGAGCCGGCGATGCGGGTCTTGAAGTCGCGCCCGACATTGTGGTCGAGCTTGTTCTTCGCCGCCATGGCGCGCGCCTGCTCCTCGGCGAGCCGCATCAGGATCGGATCGATGGTGACGGCGCCGAGGCCGTTGTTGCGGCGATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTCCGCGGTTTCACCGCCGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //