Array 1 11456-12095 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNP01000138.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24359 SEEH4359_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11456 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 11517 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 11578 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 11639 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 11700 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 11761 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 11822 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 11883 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 11944 29 100.0 33 ............................. AACAGGAACAGGAAAAAAAAGAATTTGTCCGGT 12006 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 12067 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97238-95574 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNP01000133.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24359 SEEH4359_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 97237 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 97176 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 97115 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 97054 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 96987 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 96926 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 96865 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 96804 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 96743 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 96682 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 96621 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 96560 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 96499 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 96438 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 96377 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 96316 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 96255 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 96194 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 96133 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 96030 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 95969 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 95908 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 95847 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 95786 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 95725 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 95664 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 95603 29 96.6 0 A............................ | A [95576] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113888-113494 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNP01000133.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24359 SEEH4359_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113887 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 113826 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 113765 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 113704 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 113643 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 113582 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 113521 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //