Array 1 1-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDFR01000033.1 Lacticaseibacillus rhamnosus PEL6 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 67 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 133 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 199 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 265 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 331 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 397 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 463 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 529 35 83.3 0 .......................AA.C...-..T.A | AA [550] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : | # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 829-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDFR01000008.1 Lacticaseibacillus rhamnosus PEL6 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 828 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 762 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 696 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 630 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 564 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 498 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 432 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 366 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 300 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 234 36 100.0 29 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCC 169 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 103 36 100.0 29 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGG 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //