Array 1 48908-46439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKY01000102.1 Cronobacter dublinensis subsp. lausannensis LMG 23824 cdlau515_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48907 29 100.0 32 ............................. CGTCCAATATTACACACGGAATTATCCGAACT 48846 29 100.0 32 ............................. AATTGACAGCCCGCCCACCTCAATTTACTGTA 48785 29 100.0 32 ............................. CGCGCAACGTTAGTCTGTCCTGTTAGGTCGTT 48724 29 100.0 32 ............................. CCGGTATTAGACGGCATCAAACCAACTTCTTC 48663 29 100.0 32 ............................. GTTTTGTTGTATTGCTCTTGGCTAATCTTTTT 48602 29 100.0 32 ............................. TTGAGACTGCTGCTTTAGCGCCTCAAGTTTCT 48541 29 100.0 32 ............................. CTCTACAGCGTTGTTGGTGATATCGCTGATGA 48480 29 100.0 32 ............................. TCAGGGGATCTGTTTGCGGACCAGCGTCATCA 48419 29 100.0 32 ............................. AGCAATAAATTTCATAACCTGCTTATTAACAA 48358 29 100.0 32 ............................. CGCTGTTGAACGTGCTGTTTGCGTGCCGCGAA 48297 29 100.0 32 ............................. ATATCCCTCGTCGCATTTATACTCGTAGCTTT 48236 29 100.0 32 ............................. CGCCTGCACGTCATGCAGTGACAGATCGCTGA 48175 29 100.0 32 ............................. ACATCATCAATCCCTTTGTGGCGTCTGTAATT 48114 29 100.0 32 ............................. TTATTTAGATCAGCTGTTGGTGCATTCAGTTG 48053 29 100.0 32 ............................. CTCGGGCTGCGAATTAACGGCGCGGCGCCAGG 47992 29 100.0 32 ............................. TAACGATTACAGAGAACGGCCTTTCTGTTCCA 47931 29 100.0 32 ............................. TAATAGAACGCGCGAACGACCTCAACCAGATA 47870 29 100.0 32 ............................. TTTTAAACAACGTGGTTACGGTGAGGTAGAGA 47809 29 96.6 32 ......T...................... CCATCGCTACTAATCAGGTAGCGCCATGAACG 47748 29 100.0 32 ............................. CTTTCTGGCGGGAGTTGATGGTTTTCTTCGGG 47687 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 47626 29 100.0 32 ............................. ATATTTTTCTATCTCCACTTTGCCAGCGGCGA 47565 29 100.0 32 ............................. CATTGCCATCGCCGCTTGCCCAGAGGTTCTTT 47504 29 100.0 32 ............................. GTACTTCATCCACATCACCAATCGCTGCTGAT 47443 29 100.0 32 ............................. AGACGCGCCATTGCGCCATTTGCTGGCCGGCG 47382 29 100.0 32 ............................. GGCTCACGGCACGCGTATCGACGCGCTACGCG 47321 29 100.0 32 ............................. TGCGTTCTACCTGATCCAGTGATTTAAAAATT 47260 29 96.6 32 ............................T CCCGGATACCTGCCACGCCAGCGGGCGCGTTC 47199 29 100.0 32 ............................. AAAATAAATTGCAGCGAACCCTATCTGACAAA 47138 29 100.0 32 ............................. GTTGGCGTCACTGGTGCTGGAGGTGCTGGAGG 47077 29 100.0 32 ............................. CCCCGCATTAGCGGGGCTCCTCCCGTCTTATT 47016 29 96.6 32 ..............T.............. CCGCCAGAACTACAGGCGGCGGCAATGCAGAG 46955 29 100.0 32 ............................. GACGGGCACCGGTTAATGCAGTGCCGTTTAAA 46894 29 100.0 32 ............................. GTTTGTGGTCGTTGTAAAGGCACAGGCCTGCG 46833 29 100.0 32 ............................. CGCATCTGGGACGACGACTGGATCACGCCGCC 46772 29 100.0 32 ............................. CAGACCGAGAATATCTTGTTACCGAGATAGGC 46711 29 100.0 32 ............................. TTGCTTCAGCTCGCGTGCGCGCTTGATTGAAT 46650 29 96.6 32 .A........................... TTCTTAAACAGATACGGCCAGACCAGCACGCG 46589 29 96.6 32 ...........................A. GTCGCGGAAACCTACCTCAACGGGCGCGGCAC 46528 29 100.0 32 ............................. ACCCCCGGCTATCACTGGGTGGTTGTTGTGGA 46467 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTAGCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCATGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAACCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTCAACCACCCGACAAGGCAAACATTCGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCATATTGTGCTGACGCATCTGGATTTCGATCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82702-82435 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKY01000083.1 Cronobacter dublinensis subsp. lausannensis LMG 23824 cdlau515_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82701 28 92.9 32 ...........GG............... GTTCCGACGTGTCGGATGTGTTCATCCTGTTT 82641 28 100.0 32 ............................ AGAATAGAACTCACTGATTCCAGTGTGCGGGT 82581 28 96.4 32 ............G............... TCGTAGTTAACGACATAGGCGTCGCCACTAGC 82521 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 82461 27 85.7 0 ...T.......T..........-.C... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCTGGGTTACAGGATTACTGCCAGAGCAGCGCAATATTACTCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAGGCCGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGGCCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACAATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTCTTGATTTTTATCATACGCTGGCGAGGCGCTAAAAAAGGGGATACGGCATCAAAATGCATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGCCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACTACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 93605-91173 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJKY01000083.1 Cronobacter dublinensis subsp. lausannensis LMG 23824 cdlau515_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93604 28 100.0 32 ............................ ACCGCCATAAGTCGCTACGCAGCGCAAAACGG 93544 28 100.0 32 ............................ GAAAAACGCTTCCTTATATATACGACGTTGCG 93484 28 100.0 32 ............................ AGCTCCCCTCCGATTTTGCCGAGCACGTCCTC 93424 28 100.0 32 ............................ TTGCGCGGGCGTCCGGGGCGGGGCTGCTGTCG 93364 28 100.0 32 ............................ TGCGGAAGTGGTGATATATTTCCGCGCCATAC 93304 28 100.0 32 ............................ TCCTGCTTTGTCGCCACCGCGTGGCCGCTAAT 93244 28 100.0 32 ............................ CGCTAGCACTATGGCCACAAAGAACAATCCAC 93184 28 100.0 32 ............................ ATAGGCAATCTGACTAAACCAGTAACGCAAAA 93124 28 100.0 33 ............................ ACTTCAACGGCAATCGATGTGGTCGCAGTGCGG 93063 28 100.0 32 ............................ TCCAGATATTCTTTCAGCTCGGGAGTGCCGAA 93003 28 100.0 32 ............................ AGTAACCGCCGGTAATTTTGCTCACTGCGTCA 92943 28 100.0 32 ............................ TCTTCAACCGCGGGCGTGGTCGATCTGACGCG 92883 28 100.0 32 ............................ TGGAAGCGTCCGGGCTCGGGAATAACCCCGCG 92823 28 100.0 32 ............................ TGGCGGCAATATAGCGGCTAACGCTAAAGACC 92763 28 100.0 33 ............................ TGGTCGACGGGCAGCGCAGTTACGCGCCACCAT 92702 28 100.0 32 ............................ AGTTGCGCGACGACACCGAGCCCGCCGTGGGC 92642 28 100.0 32 ............................ ACCAGCGATTTATTTAATGGCTCGCCTTTTTC 92582 28 100.0 33 ............................ TCAACAGCCCGATGTACTACCCGCCGGTGACAA 92521 28 100.0 32 ............................ CCCCAGGAGCGACAAAAAGACCGCTGAAAGAA 92461 28 100.0 32 ............................ GCAAAGATGCCGGGCAGGTCAAGCTGTCTGCC 92401 28 100.0 32 ............................ TGATATCCCAGCACGCGCTGGACCGCTTCGTT 92341 28 100.0 33 ............................ CGGCTGCGTGGGCGCCGAGCAGTCGATCAGGTC 92280 28 100.0 32 ............................ TGCGTCGACATTTCGCCATTCTGCATATTGCC 92220 28 100.0 32 ............................ TGGGCAAAACTGTTAACCACAGCAACACTGCC 92160 28 100.0 32 ............................ GTACAGCAGCGGAGGAGTGTTCAAAAACGCAC 92100 28 100.0 32 ............................ ACCGACTGAACTGATTTGAAGTTGAAGGCGCG 92040 28 100.0 32 ............................ AGGAAGGAGCATGTGAAGAAATGCGACGCTGG 91980 28 100.0 32 ............................ TTACAGAATCAAATCAATTCGCGCGGCGAACA 91920 28 100.0 32 ............................ AGGACGGCTTTATCACCCCGGCCAATCAGGGC 91860 28 100.0 33 ............................ AGGGATTCCGGCTGGCTGGCGTAGCGGAGGTAA 91799 28 100.0 32 ............................ TGCTCGGTGGGGGTATCGCTGGCTGATACAAA 91739 28 100.0 32 ............................ TGATTCGCGTAGCGCGTCGATACGCGTGCCGT 91679 28 100.0 32 ............................ TCCTTAAAAAAGTTTTTCGTGCTTACCGGTCT 91619 28 100.0 32 ............................ ACTCTTGCCGCTCACCCGCCAGGCGTTCCACC 91559 28 100.0 32 ............................ AGCGGCGCGGAAATCTCTGACGGCACGCTCAA 91499 28 100.0 32 ............................ TGGCGGATCAGCATCGCGATGTATTCGTTGAG 91439 28 100.0 32 ............................ GAAGGGGAACTGTCTTTATCTGACCCTTAAAT 91379 28 100.0 32 ............................ CTCACCTGCATCTGGCGGCTTTCATGCCCTCC 91319 28 100.0 32 ............................ GTGCGCAGCCAGAAAACATTCAGGAATGGTGT 91259 28 100.0 32 ............................ GTTAGTCGTGGTTTCGACCACGCGCGCTCCGG 91199 27 92.9 0 ....................-...A... | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGCAGGTTGATATCCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACTACCGCTGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACTTTCACGTTTAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : ATGCCATTTTTAATGCCATCATCGAAGGCAAAAGCCCATACCTAAAGATTAATGAATAAACTTCTTTATTTATTCGTGCCCTTTGACGTGGCGGAGTGCATGACGGCCGTGCGCCTGGGCTGATATATTTTAAAAATTAAAGGGATGTCACGATATAGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACTCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //